Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014575

Physical Location & Seq

Genomic Coordinates Forward (+)

21774862 .. 21779310

Gene Structure 4449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTGCAATGAGTACGAGCTCCACCACACCCGCGCGATTACTTGCATTTCCATTACGACACCGTTTCCACGACCATTCGCGGAGTTCCCTGGCCTTTAATAAACCTCTTCCAAGAGCTCCTAGACTCATTTGCATGGCGGAGCCCTATTTGATTACAAAGCTGGATTCTGCCGAGAAGACGTGGAAAGAGTTATCGGTTAAGCTGGCTGATCCAGATGTCGTGTCAAATCCTAGTGAATACCAGAAGCTGGCACAGTCCGTGGCTGAGCTCGACGAGGTTGTGACAATCTATAAGAATTACAAAGGCTGCGAGAAGCAGTTACAAGAGACAAAAGCTTTAGCAAAAGATGCTGGCAATGATGAGGATATGGCAGAGATGATATCTTATGAAATTGAATCTTTATCCAATCAAATCAAAGAACTGGAAGGGAAGCTCAAGATGCTACTCCTTCCTAGTGACCCTCTTGATTTAAGAAATATAATGCTTGAAGTAAGGGCTGGTACTGGTGGTGATGAAGCTGGAATCTGGGCAGGTGATCTTGTTCGTATGTATGAGAAGTACAGTGAGAGGAATAATTGGAGGTACAGCGCAGTTTCAAGCTCAGAGGCTGAAAAAGGAGGATTCAAGACCTATGTGATGGAGATAAAAGGAAAACGTGTATACAGCAAATTAAAATATGAATCTGGTGTTCACCGGGTTCAACGTGTTCCTCAAACAGAAACGCAGGGTCGTGTGCATACTTCCACTGCAACTGTTGCAATCATGCCAGAGGCGGATGAAGTTGAGGTGGTTATTGACCCAAAAGATATTGAACTGACAACAGCAAGGTCTGGGGGTGCTGGAGGGCAGAATGTCAATAAGGTGGAGACAGCTGTTGATCTTGTCCATAAACCAACGGGCATCCGCATCTTTTGTAGTGAAGAAAGGTCTCAACTCCAGAACAAGCATCGTGCCTTTCAGTTGCTGCGAGCAAAATTGTATAAGATAAAATTGAGAGAGCAGCAAGAGTTGATTAGGAATCAACGGAAATCACAGGTTGGTACTGGTTCTCGTGCAGAAAAGATTCGGACATACAACTTTAAGGACAATAGAGTGACTGACCACCGGTTAAAGACGAACTATGAGCTCACCTCTTTTCTTGGTGGTGATATAGAGAACGCAGTTCAGGCTTGTACTTCCCTGGAACAGCAGGAACTCCTGGAAGAACTCGCCGAATCTGTAGGAGCTCCAGCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

414

Amino Acids

46.4

Weight (kDa)

7.1

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62910
fragaria_vesca	FvH4_2g25000
malus_domestica	MD03G1280500.v1.1 MD11G1301500.v1.1
prunus_persica	Prupe.8G255000_v2.0.a1
pyrus_communis	pycom03g22220 pycom11g26410
rosa_chinensis	RchiOBHm_Chr6g0292981
rosa_laevigata	RLG00000011977
rosa_multiflora	Rmu_sc0001788.1_g000007
rosa_roxburghii	Rroxscaffold_7G00174500
rosa_rugosa	Rorug06G0231600
rosa_samantha	Rh6AG344400 Rh6BG351700 Rh6CG358900 Rh6DG344500
rosa_wichuraiana	Rw6G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	3 cut(s)	35, 37, 82
AciI	CCGC	5 cut(s)	33, 82, 140, 776, 907
AclWI	GGATC	1 cut(s)	206
AfaI	GTAC	6 cut(s)	16, 505, 563, 587, 1045, 1177
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	2 cut(s)	658, 706
AgeI	ACCGGT	1 cut(s)	1107
AgsI	TTSAA	6 cut(s)	398, 491, 600, 628, 704, 815
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	3 cut(s)	90, 1182, 1200
Alw21I	GWGCWC	5 cut(s)	23, 121, 273, 1131, 1231
Alw26I	GTCTC	3 cut(s)	323, 863, 936
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	3 cut(s)	250, 611, 967
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	4 cut(s)	5, 309, 967, 1003
AsiGI	ACCGGT	1 cut(s)	1107
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	2 cut(s)	37, 593
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	5 cut(s)	524, 548, 686, 1123, 1160
BanII	GRGCYC	6 cut(s)	23, 121, 147, 273, 1131, 1231
BauI	CACGAG	1 cut(s)	1053
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	5 cut(s)	23, 121, 273, 1131, 1231
BbvI	GCAGC	3 cut(s)	296, 954, 1015
BccI	CCATC	1 cut(s)	634
BciT130I	CCWGG	3 cut(s)	92, 1184, 1202
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	3 cut(s)	323, 863, 936
BfaI	CTAG	3 cut(s)	123, 234, 456
BfmI	CTRYAG	1 cut(s)	1221
BfuAI	ACCTGC	1 cut(s)	524
BisI	GCNGC	4 cut(s)	6, 310, 968, 1004
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	4 cut(s)	7, 311, 969, 1005
Bme1390I	CCNGG	4 cut(s)	92, 698, 1184, 1202
BmgBI	CACGTC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	4 cut(s)	92, 698, 1184, 1202
BmsI	GCATC	5 cut(s)	340, 432, 912, 918, 958
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
BpmI	CTGGAG	3 cut(s)	864, 923, 1215
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	936
BsaJI	CCNNGG	3 cut(s)	90, 261, 1182
BsaWI	WCCGGW	1 cut(s)	1107
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	1107
Bse1I	ACTGG	3 cut(s)	429, 511, 1051
Bse3DI	GCAATG	2 cut(s)	15, 364
BseBI	CCWGG	3 cut(s)	92, 1184, 1202
BseDI	CCNNGG	3 cut(s)	90, 261, 1182
BseGI	GGATG	2 cut(s)	784, 903
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	2 cut(s)	15, 364
BseMII	CTCAG	2 cut(s)	258, 618
BseNI	ACTGG	3 cut(s)	429, 511, 1051
BseXI	GCAGC	3 cut(s)	296, 954, 1015
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	3 cut(s)	35, 37, 82
BshFI	GGCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	1107
BsiHKAI	GWGCWC	5 cut(s)	23, 121, 273, 1131, 1231
BsiSI	CCGG	2 cut(s)	697, 1108
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	3 cut(s)	323, 863, 936
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	936
Bsp1286I	GDGCHC	6 cut(s)	23, 121, 147, 273, 1131, 1231
Bsp143I	GATC	3 cut(s)	211, 538, 880
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	5 cut(s)	33, 82, 140, 776, 907
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	259, 617
BspFNI	CGCG	3 cut(s)	35, 37, 82
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	936
BsrDI	GCAATG	2 cut(s)	15, 364
BsrFI	RCCGGY	1 cut(s)	1107
BsrI	ACTGG	3 cut(s)	429, 511, 1051
BssAI	RCCGGY	1 cut(s)	1107
BssECI	CCNNGG	3 cut(s)	90, 261, 1182
BssMI	GATC	3 cut(s)	211, 538, 880
BssNAI	GTATAC	1 cut(s)	664
BssSI	CACGAG	1 cut(s)	1053
Bst1107I	GTATAC	1 cut(s)	664
Bst2BI	CACGAG	1 cut(s)	1053
Bst2UI	CCWGG	3 cut(s)	92, 1184, 1202
Bst4CI	ACNGT	4 cut(s)	65, 258, 566, 757
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	2 cut(s)	350, 758
BstC8I	GCNNGC	5 cut(s)	207, 252, 355, 972, 1237
BstDEI	CTNAG	2 cut(s)	267, 604
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	784, 903
BstFNI	CGCG	3 cut(s)	35, 37, 82
BstHHI	GCGC	2 cut(s)	37, 593
BstKTI	GATC	3 cut(s)	214, 541, 883
BstMAI	GTCTC	3 cut(s)	323, 863, 936
BstMBI	GATC	3 cut(s)	211, 538, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	350, 442, 758, 1169
BstNI	CCWGG	3 cut(s)	92, 1184, 1202
BstSCI	CCNGG	4 cut(s)	90, 696, 1182, 1200
BstSFI	CTRYAG	1 cut(s)	1221
BstUI	CGCG	3 cut(s)	35, 37, 82
BstV1I	GCAGC	3 cut(s)	296, 954, 1015
BstV2I	GAAGAC	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	784, 903
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	2 cut(s)	571, 747
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	5 cut(s)	207, 252, 355, 972, 1237
CaiI	CAGNNNCTG	3 cut(s)	250, 611, 967
CfoI	GCGC	2 cut(s)	37, 593
Cfr10I	RCCGGY	1 cut(s)	1107
Csp6I	GTAC	6 cut(s)	15, 504, 562, 586, 1044, 1176
CspAI	ACCGGT	1 cut(s)	1107
CviAII	CATG	2 cut(s)	136, 766
CviQI	GTAC	6 cut(s)	15, 504, 562, 586, 1044, 1176
DdeI	CTNAG	2 cut(s)	267, 604
DpnI	GATC	3 cut(s)	213, 540, 882
DpnII	GATC	3 cut(s)	211, 538, 880
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	2 cut(s)	155, 791
Ecl136II	GAGCTC	5 cut(s)	21, 119, 271, 1129, 1229
Eco24I	GRGCYC	6 cut(s)	23, 121, 147, 273, 1131, 1231
Eco31I	GGTCTC	1 cut(s)	936
Eco32I	GATATC	1 cut(s)	384
Eco53kI	GAGCTC	5 cut(s)	21, 119, 271, 1129, 1229
EcoICRI	GAGCTC	5 cut(s)	21, 119, 271, 1129, 1229
EcoRII	CCWGG	3 cut(s)	90, 1182, 1200
EcoRV	GATATC	1 cut(s)	384
EcoT38I	GRGCYC	6 cut(s)	23, 121, 147, 273, 1131, 1231
FaeI	CATG	2 cut(s)	139, 769
FatI	CATG	2 cut(s)	135, 765
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	4 cut(s)	6, 310, 968, 1004
FokI	GGATG	2 cut(s)	791, 890
FriOI	GRGCYC	6 cut(s)	23, 121, 147, 273, 1131, 1231
Fsp4HI	GCNGC	4 cut(s)	6, 310, 968, 1004
FspBI	CTAG	3 cut(s)	123, 234, 456
GlaI	GCGC	2 cut(s)	36, 592
GluI	GCNGC	4 cut(s)	6, 310, 968, 1004
GsuI	CTGGAG	3 cut(s)	864, 923, 1215
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	697, 1108
HhaI	GCGC	2 cut(s)	37, 593
Hin1II	CATG	2 cut(s)	139, 769
Hin6I	GCGC	2 cut(s)	35, 591
HinP1I	GCGC	2 cut(s)	35, 591
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	9 cut(s)	126, 167, 398, 525, 624, 683, 1021, 1066, 1217
HpaII	CCGG	2 cut(s)	697, 1108
HphI	GGTGA	5 cut(s)	524, 548, 686, 1123, 1160
Hpy166II	GTNNAC	2 cut(s)	664, 694
Hpy188I	TCNGA	2 cut(s)	607, 1071
Hpy188III	TCNNGA	5 cut(s)	215, 439, 467, 628, 940
Hpy8I	GTNNAC	2 cut(s)	664, 694
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	422, 461
HpyCH4III	ACNGT	4 cut(s)	65, 258, 566, 757
HpyCH4IV	ACGT	3 cut(s)	182, 658, 706
HpyCH4V	TGCA	7 cut(s)	8, 47, 135, 739, 752, 761, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	350, 442, 758, 1169
HpyF3I	CTNAG	2 cut(s)	267, 604
HpySE526I	ACGT	3 cut(s)	182, 658, 706
Hsp92II	CATG	2 cut(s)	139, 769
HspAI	GCGC	2 cut(s)	35, 591
Kzo9I	GATC	3 cut(s)	211, 538, 880
LmnI	GCTCC	5 cut(s)	26, 124, 142, 1226, 1234
Lsp1109I	GCAGC	3 cut(s)	296, 954, 1015
LweI	GCATC	5 cut(s)	340, 432, 912, 918, 958
MaeI	CTAG	3 cut(s)	123, 234, 456
MaeII	ACGT	3 cut(s)	182, 658, 706
MaeIII	GTNAC	4 cut(s)	283, 321, 458, 1096
MalI	GATC	3 cut(s)	213, 540, 882
MboI	GATC	3 cut(s)	211, 538, 880
MboII	GAAGA	4 cut(s)	101, 190, 935, 1217
MhlI	GDGCHC	6 cut(s)	23, 121, 147, 273, 1131, 1231
MluCI	AATT	6 cut(s)	298, 393, 577, 671, 977, 992
MlyI	GAGTC	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	6 cut(s)	99, 201, 473, 674, 1083, 1112
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	875, 1235
MspI	CCGG	2 cut(s)	697, 1108
MspR9I	CCNGG	4 cut(s)	92, 698, 1184, 1202
MvaI	CCWGG	3 cut(s)	92, 1184, 1202
MvnI	CGCG	3 cut(s)	35, 37, 82
MwoI	GCNNNNNNNGC	4 cut(s)	350, 442, 758, 1169
NciI	CCSGG	1 cut(s)	698
NdeII	GATC	3 cut(s)	211, 538, 880
NlaIII	CATG	2 cut(s)	139, 769
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	283, 458, 1096
PaqCI	CACCTGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	8 cut(s)	167, 398, 525, 624, 683, 1021, 1066, 1217
PflMI	CCANNNNNTGG	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	1200
PinAI	ACCGGT	1 cut(s)	1107
PkrI	GCNGC	4 cut(s)	7, 311, 969, 1005
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp124BI	GAGCTC	5 cut(s)	23, 121, 273, 1131, 1231
Psp6I	CCWGG	3 cut(s)	90, 1182, 1200
PspGI	CCWGG	3 cut(s)	90, 1182, 1200
PspN4I	GGNNCC	1 cut(s)	144
PstNI	CAGNNNCTG	3 cut(s)	250, 611, 967
PvuII	CAGCTG	2 cut(s)	875, 1235
RsaI	GTAC	6 cut(s)	16, 505, 563, 587, 1045, 1177
RsaNI	GTAC	6 cut(s)	15, 504, 562, 586, 1044, 1176
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	5 cut(s)	23, 121, 273, 1131, 1231
SaqAI	TTAA	6 cut(s)	99, 201, 473, 674, 1083, 1112
SatI	GCNGC	4 cut(s)	6, 310, 968, 1004
Sau3AI	GATC	3 cut(s)	211, 538, 880
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	4 cut(s)	92, 698, 1184, 1202
SduI	GDGCHC	6 cut(s)	23, 121, 147, 273, 1131, 1231
SfaNI	GCATC	5 cut(s)	340, 432, 912, 918, 958
SfcI	CTRYAG	1 cut(s)	1221
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	6 cut(s)	298, 393, 577, 671, 977, 992
SsiI	CCGC	5 cut(s)	33, 82, 140, 776, 907
SspMI	CTAG	3 cut(s)	123, 234, 456
SstI	GAGCTC	5 cut(s)	23, 121, 273, 1131, 1231
StyD4I	CCNGG	4 cut(s)	90, 696, 1182, 1200
TaaI	ACNGT	4 cut(s)	65, 258, 566, 757
TaiI	ACGT	3 cut(s)	185, 661, 709
TaqI	TCGA	1 cut(s)	273
TasI	AATT	6 cut(s)	298, 393, 577, 671, 977, 992
TatI	WGTACW	2 cut(s)	561, 1175
TfiI	GAWTC	8 cut(s)	167, 398, 525, 624, 683, 1021, 1066, 1217
Tru1I	TTAA	6 cut(s)	99, 201, 473, 674, 1083, 1112
Tru9I	TTAA	6 cut(s)	99, 201, 473, 674, 1083, 1112
TscAI	CASTG	2 cut(s)	571, 754
TseFI	GTSAC	3 cut(s)	283, 458, 1096
TseI	GCWGC	4 cut(s)	5, 309, 967, 1003
Tsp45I	GTSAC	3 cut(s)	283, 458, 1096
TspDTI	ATGAA	4 cut(s)	405, 531, 696, 795
TspGWI	ACGGA	2 cut(s)	250, 1042
TspRI	CASTG	2 cut(s)	571, 754
Van91I	CCANNNNNTGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	3 cut(s)	123, 234, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.