FvH4_2g25000

Peptide chain release factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
20310125 .. 20314837
4713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25000.t1

Sequence Viewer

Length: 1239 bp
ATGAGCGGCCTCACCACCACCTCCGCACCGCCGCGATTACTCGCATTCCCTCCACGACGCCGTTTCACCCACCACTCATGGACTTCCCTTTCCATCCCCAAACCTCATCCCAGAGCTCCACGAATCACTTGCATGGCGGCACCGTATTTGATTACGAAGCTGGAATCTGCGGAGAAGACATGGAAGGAATTATCGGTCAAGCTAGCTGATCCAGACATCGTGTCGAATCCCAGTGAGTACCAGAGGCTGGCGCAATCCGTGGCGGAGCTCGATGAGGTTGTGTCAATTTATAAGGAGTATAAGGACTGTGAGAAGCAGTTAGAGGAGAGTAAAGCTTTGGCGGATGAGGATGGAAATGATGAAGAAATGGCGGCTATGATTTCGTACGAAATTGAATCTTTGTCCAATCAAATCAAAGAACTTGAGGAGAAGCTTAAGACGAAACTCCTTCCTACAGACCCTCTTGATGCCAGAAATATAATGCTTGAAGTAAGGGCTGGTACTGGTGGTGATGAAGCTGGAATCTGGGCAGGTGATCTTGTTCGTATGTATGAGAAGTACTGTGAGAGGAACAATTGGAAGTTCAACCCAGTTTCAAGCACAGAGGCTGAAAGAGGAGGATACAAGACCTATGTGATGGAGATAAAAGGAAAGCGTGTATACAGCAAATTAAAATATGAGTCTGGTGTTCACCGGGTTCAACGTGTTCCTCATACGGAAACACAGGGTCGTGTGCATACTTCCACTGCAACTGTTGCCATCATGCCTGAGGCGGATGAAGTTGAGGTGGTTATTGACCCAAAAGATATTGAACTGACAACAGCAAGGTCTGGGGGAGCTGGAGGGCAGAATGTCAACAAGGTGGAGACAGCTGTTGATCTTGTCCATAAGCCAACTGGCATCCGCATCTTTTGTAGTGAAGAGAGGTCTCAACTTCAGAACAAGCATCGTGCTTTTCAGTTGCTGAGAGCAAAATTGTATAAAATAAAACTGAGGGAGCAGCAGGAACTGATTAGGAATCAACGGAAATCACAGGTTGGGACCGGTTCTCGTGCAGAAAAGATTCGAACATATAATTTCAAGGACAATAGAGTCACTGACCACCGGTTGAAGATAAACTATGAGCTCACCGGTTTTCTTGGTGGTGATATAGATAACGCAATTCAGGCCTGTACTTCTTTGGAGCAAAAGGAGCTTCTGGAAGAACTTGCTGAATCTGTAGGAGCTCCAGCTGGGTAA

Protein Analysis

413

Amino Acids

46.46

Weight (kDa)

6.55

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCRF PF03462 58 - 252 2e-71 PCRF domain
RF-1 PF00472 259 - 369 3.3e-38 RF-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014575)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62910
fragaria_vesca FvH4_2g25000
malus_domestica MD03G1280500.v1.1 MD11G1301500.v1.1
prunus_persica Prupe.8G255000_v2.0.a1
pyrus_communis pycom03g22220 pycom11g26410
rosa_chinensis RchiOBHm_Chr6g0292981
rosa_laevigata RLG00000011977
rosa_multiflora Rmu_sc0001788.1_g000007
rosa_roxburghii Rroxscaffold_7G00174500
rosa_rugosa Rorug06G0231600
rosa_samantha Rh6AG344400 Rh6BG351700 Rh6CG358900 Rh6DG344500
rosa_wichuraiana Rw6G030060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AarI CACCTGC 1 cut(s) 521
AasI GACNNNNNNGTC 1 cut(s) 1091
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 247
AccBSI CCGCTC 1 cut(s) 6
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 34
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 920
AcyI GRCGYC 1 cut(s) 58
AfaI GTAC 5 cut(s) 239, 386, 502, 560, 1174
AfiI CCNNNNNNNGG 1 cut(s) 247
AflII CTTAAG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 703
AgeI ACCGGT 3 cut(s) 1043, 1104, 1130
AgsI TTSAA 8 cut(s) 395, 488, 586, 597, 701, 812, 1081, 1111
AhdI GACNNNNNGTC 1 cut(s) 220
Alw21I GWGCWC 4 cut(s) 118, 270, 1128, 1228
Alw26I GTCTC 2 cut(s) 860, 933
AlwI GGATC 1 cut(s) 203
AlwNI CAGNNNCTG 4 cut(s) 247, 608, 964, 1009
AoxI GGCC 2 cut(s) 7, 1167
ApeKI GCWGC 1 cut(s) 1000
AsiGI ACCGGT 3 cut(s) 1043, 1104, 1130
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 1041
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 7 cut(s) 4, 58, 521, 545, 683, 1120, 1157
AsuII TTCGAA 1 cut(s) 1066
AsuNHI GCTAGC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 1041
AxyI CCTNAGG 1 cut(s) 768
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 4 cut(s) 118, 270, 1128, 1228
BauI CACGAG 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 4 cut(s) 118, 270, 1128, 1228
BbvI GCAGC 1 cut(s) 1012
BccI CCATC 4 cut(s) 101, 344, 631, 767
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciVI GTATCC 1 cut(s) 614
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 2 cut(s) 860, 933
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 453, 1218
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 521
BfuI GTATCC 1 cut(s) 614
BisI GCNGC 5 cut(s) 7, 32, 138, 372, 1001
BlsI GCNGC 5 cut(s) 8, 33, 139, 373, 1002
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 1041
BmeRI GACNNNNNGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 1041
BmiI GGNNCC 2 cut(s) 141, 1042
BmrFI CCNGG 1 cut(s) 695
BmrI ACTGGG 2 cut(s) 225, 584
BmsI GCATC 4 cut(s) 457, 909, 915, 955
BmtI GCTAGC 1 cut(s) 206
BmuI ACTGGG 2 cut(s) 225, 584
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 2 cut(s) 861, 1212
Bpu14I TTCGAA 1 cut(s) 1066
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 3 cut(s) 1043, 1104, 1130
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 3 cut(s) 1043, 1104, 1130
Bse1I ACTGG 4 cut(s) 231, 508, 590, 901
Bse21I CCTNAGG 1 cut(s) 768
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 6 cut(s) 93, 106, 349, 355, 781, 900
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 759, 956, 983
BseNI ACTGG 4 cut(s) 231, 508, 590, 901
BseRI GAGGAG 3 cut(s) 338, 440, 630
BseXI GCAGC 1 cut(s) 1012
BseYI CCCAGC 1 cut(s) 1232
BsgI GTGCAG 1 cut(s) 1074
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 9, 1169
BshNI GGYRCC 1 cut(s) 139
BshTI ACCGGT 3 cut(s) 1043, 1104, 1130
BsiHKAI GWGCWC 4 cut(s) 118, 270, 1128, 1228
BsiSI CCGG 4 cut(s) 694, 1044, 1105, 1131
BsiWI CGTACG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 1054
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 860, 933
BsmFI GGGAC 1 cut(s) 1054
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 2 cut(s) 9, 1169
Bso31I GGTCTC 1 cut(s) 933
Bsp119I TTCGAA 1 cut(s) 1066
Bsp1286I GDGCHC 4 cut(s) 118, 270, 1128, 1228
Bsp143I GATC 3 cut(s) 208, 535, 877
BspANI GGCC 2 cut(s) 9, 1169
BspCNI CTCAG 3 cut(s) 760, 957, 984
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 141, 1042
BspMI ACCTGC 1 cut(s) 521
BspOI GCTAGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 203
BspT104I TTCGAA 1 cut(s) 1066
BspT107I GGYRCC 1 cut(s) 139
BspTI CTTAAG 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 933
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 3 cut(s) 1043, 1104, 1130
BsrI ACTGG 4 cut(s) 231, 508, 590, 901
BssAI RCCGGY 3 cut(s) 1043, 1104, 1130
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 3 cut(s) 208, 535, 877
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 1050
Bst1107I GTATAC 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 1050
Bst4CI ACNGT 4 cut(s) 144, 308, 563, 754
Bst6I CTCTTC 1 cut(s) 915
BstACI GRCGYC 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 755
BstBI TTCGAA 1 cut(s) 1066
BstC8I GCNNGC 2 cut(s) 204, 249
BstDEI CTNAG 3 cut(s) 768, 965, 992
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 6 cut(s) 93, 106, 349, 355, 781, 900
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 211, 538, 880
BstMAI GTCTC 2 cut(s) 860, 933
BstMBI GATC 3 cut(s) 208, 535, 877
BstMWI GCNNNNNNNGC 3 cut(s) 755, 1166, 1192
BstSCI CCNGG 1 cut(s) 693
BstSFI CTRYAG 2 cut(s) 453, 1218
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 1012
BstV2I GAAGAC 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 661
Bsu36I CCTNAGG 1 cut(s) 768
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 9, 1169
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 6 cut(s) 93, 106, 349, 355, 781, 900
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 3 cut(s) 238, 744, 1095
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 204, 249
CaiI CAGNNNCTG 4 cut(s) 247, 608, 964, 1009
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 3 cut(s) 1043, 1104, 1130
Cfr13I GGNCC 1 cut(s) 1041
CseI GACGC 1 cut(s) 66
Csp6I GTAC 5 cut(s) 238, 385, 501, 559, 1173
CspAI ACCGGT 3 cut(s) 1043, 1104, 1130
CviAII CATG 4 cut(s) 78, 133, 180, 763
CviQI GTAC 5 cut(s) 238, 385, 501, 559, 1173
DdeI CTNAG 3 cut(s) 768, 965, 992
DpnI GATC 3 cut(s) 210, 537, 879
DpnII GATC 3 cut(s) 208, 535, 877
DrdI GACNNNNNNGTC 1 cut(s) 1091
DriI GACNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 1091
Eam1104I CTCTTC 1 cut(s) 915
Eam1105I GACNNNNNGTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 915
EciI GGCGGA 3 cut(s) 278, 356, 788
Ecl136II GAGCTC 4 cut(s) 116, 268, 1126, 1226
Eco147I AGGCCT 1 cut(s) 1169
Eco24I GRGCYC 4 cut(s) 118, 270, 1128, 1228
Eco31I GGTCTC 1 cut(s) 933
Eco47I GGWCC 1 cut(s) 1041
Eco53kI GAGCTC 4 cut(s) 116, 268, 1126, 1226
Eco57I CTGAAG 1 cut(s) 920
Eco81I CCTNAGG 1 cut(s) 768
EcoICRI GAGCTC 4 cut(s) 116, 268, 1126, 1226
EcoT38I GRGCYC 4 cut(s) 118, 270, 1128, 1228
FaeI CATG 4 cut(s) 81, 136, 183, 766
FaqI GGGAC 1 cut(s) 1054
FatI CATG 4 cut(s) 77, 132, 179, 762
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 5 cut(s) 7, 32, 138, 372, 1001
FokI GGATG 6 cut(s) 80, 93, 356, 362, 788, 887
FriOI GRGCYC 4 cut(s) 118, 270, 1128, 1228
Fsp4HI GCNGC 5 cut(s) 7, 32, 138, 372, 1001
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 252
GluI GCNGC 5 cut(s) 7, 32, 138, 372, 1001
GsaI CCCAGC 1 cut(s) 1236
GsuI CTGGAG 2 cut(s) 861, 1212
HaeIII GGCC 2 cut(s) 9, 1169
HapII CCGG 4 cut(s) 694, 1044, 1105, 1131
HgaI GACGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 4 cut(s) 81, 136, 183, 766
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 2 cut(s) 333, 431
HpaII CCGG 4 cut(s) 694, 1044, 1105, 1131
HphI GGTGA 7 cut(s) 4, 58, 521, 545, 683, 1120, 1157
Hpy166II GTNNAC 3 cut(s) 661, 691, 856
Hpy188I TCNGA 1 cut(s) 939
Hpy188III TCNNGA 3 cut(s) 212, 464, 1199
Hpy8I GTNNAC 3 cut(s) 661, 691, 856
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 178, 458
HpyCH4III ACNGT 4 cut(s) 144, 308, 563, 754
HpyCH4IV ACGT 1 cut(s) 703
HpyCH4V TGCA 4 cut(s) 132, 736, 749, 1055
HpyF10VI GCNNNNNNNGC 3 cut(s) 755, 1166, 1192
HpyF3I CTNAG 3 cut(s) 768, 965, 992
HpySE526I ACGT 1 cut(s) 703
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 4 cut(s) 81, 136, 183, 766
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 208, 535, 877
LmnI GCTCC 8 cut(s) 121, 265, 836, 997, 1183, 1192, 1223, 1231
Lsp1109I GCAGC 1 cut(s) 1012
LweI GCATC 4 cut(s) 457, 909, 915, 955
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 703
MaeIII GTNAC 1 cut(s) 1093
MalI GATC 3 cut(s) 210, 537, 879
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 208, 535, 877
MboII GAAGA 5 cut(s) 187, 374, 932, 1123, 1214
MfeI CAATTG 1 cut(s) 574
MhlI GDGCHC 4 cut(s) 118, 270, 1128, 1228
MluCI AATT 8 cut(s) 188, 285, 390, 574, 668, 974, 1075, 1161
MlyI GAGTC 2 cut(s) 689, 1101
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 2 cut(s) 435, 671
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 2 cut(s) 872, 1232
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 4 cut(s) 694, 1044, 1105, 1131
MspR9I CCNGG 1 cut(s) 695
MunI CAATTG 1 cut(s) 574
Mva1269I GAATGC 1 cut(s) 44
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 755, 1166, 1192
NciI CCSGG 1 cut(s) 695
NdeII GATC 3 cut(s) 208, 535, 877
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 4 cut(s) 81, 136, 183, 766
NlaIV GGNNCC 2 cut(s) 141, 1042
NmuCI GTSAC 1 cut(s) 1093
NspV TTCGAA 1 cut(s) 1066
PaqCI CACCTGC 1 cut(s) 521
PceI AGGCCT 1 cut(s) 1169
PctI GAATGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 8 cut(s) 123, 164, 226, 395, 522, 1018, 1063, 1214
Pfl23II CGTACG 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 247
PinAI ACCGGT 3 cut(s) 1043, 1104, 1130
PkrI GCNGC 5 cut(s) 8, 33, 139, 373, 1002
PleI GAGTC 2 cut(s) 688, 1100
PpsI GAGTC 2 cut(s) 688, 1100
PsiI TTATAA 1 cut(s) 291
Psp124BI GAGCTC 4 cut(s) 118, 270, 1128, 1228
PspFI CCCAGC 1 cut(s) 1232
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 141, 1042
PspPI GGNCC 1 cut(s) 1041
PstNI CAGNNNCTG 4 cut(s) 247, 608, 964, 1009
PvuII CAGCTG 2 cut(s) 872, 1232
RsaI GTAC 5 cut(s) 239, 386, 502, 560, 1174
RsaNI GTAC 5 cut(s) 238, 385, 501, 559, 1173
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 4 cut(s) 118, 270, 1128, 1228
SaqAI TTAA 2 cut(s) 435, 671
SatI GCNGC 5 cut(s) 7, 32, 138, 372, 1001
Sau3AI GATC 3 cut(s) 208, 535, 877
Sau96I GGNCC 1 cut(s) 1041
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 2 cut(s) 689, 1101
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 4 cut(s) 118, 270, 1128, 1228
SfaNI GCATC 4 cut(s) 457, 909, 915, 955
SfcI CTRYAG 2 cut(s) 453, 1218
SfuI TTCGAA 1 cut(s) 1066
SinI GGWCC 1 cut(s) 1041
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 422, 434
SmoI CTYRAG 2 cut(s) 422, 434
Sse9I AATT 8 cut(s) 188, 285, 390, 574, 668, 974, 1075, 1161
SseBI AGGCCT 1 cut(s) 1169
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 4 cut(s) 118, 270, 1128, 1228
StuI AGGCCT 1 cut(s) 1169
StyD4I CCNGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 144, 308, 563, 754
TaiI ACGT 1 cut(s) 706
TaqI TCGA 3 cut(s) 224, 270, 1066
TaqII GACCGA 1 cut(s) 184
TasI AATT 8 cut(s) 188, 285, 390, 574, 668, 974, 1075, 1161
TatI WGTACW 2 cut(s) 558, 1172
TauI GCSGC 4 cut(s) 9, 34, 140, 374
TfiI GAWTC 8 cut(s) 123, 164, 226, 395, 522, 1018, 1063, 1214
Tru1I TTAA 2 cut(s) 435, 671
Tru9I TTAA 2 cut(s) 435, 671
TscAI CASTG 3 cut(s) 238, 751, 1102
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 1 cut(s) 1000
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 3 cut(s) 375, 528, 792
TspGWI ACGGA 3 cut(s) 247, 731, 1039
TspRI CASTG 3 cut(s) 238, 751, 1102
Van91I CCANNNNNTGG 1 cut(s) 247
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.