Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014575

Physical Location & Seq

Genomic Coordinates Reverse (-)

14276510 .. 14283064

Gene Structure 6555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAACGATTTCTCCCTCTTCCATCAAAGAAAGGCGCCGTATTTGATTACGAAGCTGGAATCTGCAGAGAAGACATGGAAGGAATTATCGGTCAAGCTGGCTGATCCAGATGTCGTGTCGAATCCCAGTGAGTACCAGAGGCTGGCACAATCCGTGGCGGAGCTCGATGAGGTTGTGTCAATCTATAGGGAATATAAGGACTGTGAGAAGCAGTTAGAAGAGAGTAAAGTAAGGGCTGGTACTGGTGGCGATGAAGCTGGAATCTGGGCAGGTGATCTTGTTCGTATGTATGAGAAGTACAGTGAGAGGAACAATTGGAGGTTCAACCCAGTTTCCAGCACAGAGGCTGAAAGAGGAGGATACAAGACCTATGTGATGGAGATCAAAGGAAAGCGCGTATACAGCAAATTAAAATATGAATCTGGTGTTCACCGGGTTCAACGTGTTCCTCATACGGAAACACAGGGTCGTGTGCATACTTCCACTGCAACTGTTGCAATCATGCCTGAGGCAGATGAAGTTGAGGTGGTTATTGACCCAAAAGATGTTGAACTAACAACAGCAAGGTCTGGGGGAGCTGGAGGACAGAATGTCAACAAGGTGGAGACAGCTGTTGATCTTGTCCATAAGCCAACTGGCATCCGCATCTTCTGTAGTGAAGAGAGGTCTCAACTTCAGAACAAGCATCGTGCTTTTCAGTTGTTGAGAGCGAAATTGTATAAAATAAAATTGAGAGAGCAGCAGGAACTGATTAGGAATCAACGGAAATCACAGGTTGGCACTGGTTCCCGTGCAGAAAAGATTCGAACATATAATTTCAAGGACAATAGAGTCACTGATCACCGGTTGAAGATTAACTATGAGCTCACCGGTTTTCTTGGTGGTGATATAGATAATGCAATTCAGGCTTGTACTTCCTTGGAGCAAAAGGAACTCCTGGAAGAACTTGCTGAATCTGTAGGAGCTCCAGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

326

Amino Acids

36.86

Weight (kDa)

7.69

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	23 - 75	9.8e-06	PCRF domain
PCRF	PF03462	76 - 165	2.1e-41	PCRF domain
RF-1	PF00472	172 - 282	3.5e-38	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62910
fragaria_vesca	FvH4_2g25000
malus_domestica	MD03G1280500.v1.1 MD11G1301500.v1.1
prunus_persica	Prupe.8G255000_v2.0.a1
pyrus_communis	pycom03g22220 pycom11g26410
rosa_chinensis	RchiOBHm_Chr6g0292981
rosa_laevigata	RLG00000011977
rosa_multiflora	Rmu_sc0001788.1_g000007
rosa_roxburghii	Rroxscaffold_7G00174500
rosa_rugosa	Rorug06G0231600
rosa_samantha	Rh6AG344400 Rh6BG351700 Rh6CG358900 Rh6DG344500
rosa_wichuraiana	Rw6G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
AasI	GACNNNNNNGTC	1 cut(s)	830
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	396
AciI	CCGC	2 cut(s)	158, 643
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	4 cut(s)	134, 241, 299, 913
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	442
AgeI	ACCGGT	2 cut(s)	843, 869
AgsI	TTSAA	5 cut(s)	325, 440, 551, 820, 850
AhdI	GACNNNNNGTC	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	936
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	55, 97, 163, 257, 578, 611, 865, 965
AluI	AGCT	8 cut(s)	55, 97, 163, 257, 578, 611, 865, 965
Alw21I	GWGCWC	3 cut(s)	165, 867, 967
Alw26I	GTCTC	2 cut(s)	599, 672
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	3 cut(s)	142, 347, 748
ApeKI	GCWGC	1 cut(s)	739
AsiGI	ACCGGT	2 cut(s)	843, 869
Asp700I	GAANNNNTTC	2 cut(s)	8, 801
AspLEI	GCGC	2 cut(s)	37, 396
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	5 cut(s)	284, 422, 833, 859, 896
AsuII	TTCGAA	1 cut(s)	805
AxyI	CCTNAGG	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	3 cut(s)	165, 867, 967
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	3 cut(s)	165, 867, 967
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	2 cut(s)	30, 370
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	938
BciVI	GTATCC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	599, 672
BfmI	CTRYAG	4 cut(s)	63, 184, 652, 957
BfoI	RGCGCY	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	2 cut(s)	434, 938
BmeRI	GACNNNNNGTC	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	36, 787
BmrFI	CCNGG	2 cut(s)	434, 938
BmrI	ACTGGG	2 cut(s)	120, 323
BmsI	GCATC	3 cut(s)	648, 654, 694
BmuI	ACTGGG	2 cut(s)	120, 323
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	2 cut(s)	600, 951
Bpu14I	TTCGAA	1 cut(s)	805
BpuMI	CCSGG	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	153, 918
BsaWI	WCCGGW	2 cut(s)	843, 869
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	2 cut(s)	843, 869
Bse1I	ACTGG	5 cut(s)	126, 247, 329, 640, 787
Bse21I	CCTNAGG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	2 cut(s)	153, 918
BseGI	GGATG	1 cut(s)	639
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	5 cut(s)	126, 247, 329, 640, 787
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	34
BshTI	ACCGGT	2 cut(s)	843, 869
BsiHKAI	GWGCWC	3 cut(s)	165, 867, 967
BsiSI	CCGG	3 cut(s)	433, 844, 870
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	599, 672
Bso31I	GGTCTC	1 cut(s)	672
Bsp119I	TTCGAA	1 cut(s)	805
Bsp1286I	GDGCHC	3 cut(s)	165, 867, 967
Bsp143I	GATC	5 cut(s)	103, 274, 381, 616, 838
BspACI	CCGC	2 cut(s)	158, 643
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	36, 787
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	805
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	672
BsrFI	RCCGGY	2 cut(s)	843, 869
BsrI	ACTGG	5 cut(s)	126, 247, 329, 640, 787
BssAI	RCCGGY	2 cut(s)	843, 869
BssECI	CCNNGG	2 cut(s)	153, 918
BssMI	GATC	5 cut(s)	103, 274, 381, 616, 838
BssNAI	GTATAC	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	918
Bst1107I	GTATAC	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	3 cut(s)	203, 302, 493
Bst6I	CTCTTC	3 cut(s)	23, 213, 654
BstACI	GRCGYC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	99, 144
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 396
BstKTI	GATC	5 cut(s)	106, 277, 384, 619, 841
BstMAI	GTCTC	2 cut(s)	599, 672
BstMBI	GATC	5 cut(s)	103, 274, 381, 616, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	402, 494, 905
BstNI	CCWGG	1 cut(s)	938
BstSCI	CCNGG	2 cut(s)	432, 936
BstSFI	CTRYAG	4 cut(s)	63, 184, 652, 957
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	77
BstZ17I	GTATAC	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	5 cut(s)	133, 307, 483, 780, 834
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	99, 144
CaiI	CAGNNNCTG	3 cut(s)	142, 347, 748
CfoI	GCGC	2 cut(s)	37, 396
Cfr10I	RCCGGY	2 cut(s)	843, 869
Csp6I	GTAC	4 cut(s)	133, 240, 298, 912
CspAI	ACCGGT	2 cut(s)	843, 869
CviAII	CATG	2 cut(s)	75, 502
CviQI	GTAC	4 cut(s)	133, 240, 298, 912
DdeI	CTNAG	1 cut(s)	507
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	5 cut(s)	105, 276, 383, 618, 840
DpnII	GATC	5 cut(s)	103, 274, 381, 616, 838
DrdI	GACNNNNNNGTC	1 cut(s)	830
DriI	GACNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	830
Eam1104I	CTCTTC	3 cut(s)	23, 213, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	590
EarI	CTCTTC	3 cut(s)	23, 213, 654
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	3 cut(s)	163, 865, 965
Eco130I	CCWWGG	1 cut(s)	918
Eco24I	GRGCYC	3 cut(s)	165, 867, 967
Eco31I	GGTCTC	1 cut(s)	672
Eco53kI	GAGCTC	3 cut(s)	163, 865, 965
Eco57I	CTGAAG	1 cut(s)	659
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	3 cut(s)	163, 865, 965
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	918
EcoT38I	GRGCYC	3 cut(s)	165, 867, 967
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	2 cut(s)	78, 505
FatI	CATG	2 cut(s)	74, 501
FbaI	TGATCA	1 cut(s)	838
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	3 cut(s)	165, 867, 967
Fsp4HI	GCNGC	1 cut(s)	740
GlaI	GCGC	2 cut(s)	36, 395
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	2 cut(s)	600, 951
HaeII	RGCGCY	1 cut(s)	38
HapII	CCGG	3 cut(s)	433, 844, 870
HhaI	GCGC	2 cut(s)	37, 396
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	78, 505
Hin6I	GCGC	2 cut(s)	35, 394
HinP1I	GCGC	2 cut(s)	35, 394
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	8 cut(s)	59, 121, 261, 419, 757, 802, 831, 953
HpaII	CCGG	3 cut(s)	433, 844, 870
HphI	GGTGA	5 cut(s)	284, 422, 833, 859, 896
Hpy166II	GTNNAC	3 cut(s)	400, 430, 595
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	400, 430, 595
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	203, 302, 493
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	6 cut(s)	65, 475, 488, 497, 794, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	402, 494, 905
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	442
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	78, 505
HspAI	GCGC	2 cut(s)	35, 394
KasI	GGCGCC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	103, 274, 381, 616, 838
LmnI	GCTCC	5 cut(s)	160, 575, 922, 962, 970
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	3 cut(s)	648, 654, 694
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	5 cut(s)	105, 276, 383, 618, 840
MboI	GATC	5 cut(s)	103, 274, 381, 616, 838
MboII	GAAGA	7 cut(s)	10, 82, 230, 640, 671, 862, 953
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	3 cut(s)	165, 867, 967
MluCI	AATT	7 cut(s)	83, 313, 407, 713, 728, 814, 900
Mly113I	GGCGCC	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	840
MroXI	GAANNNNTTC	2 cut(s)	8, 801
MseI	TTAA	2 cut(s)	410, 855
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	433, 844, 870
MspR9I	CCNGG	2 cut(s)	434, 938
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	938
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	402, 494, 905
NarI	GGCGCC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	5 cut(s)	103, 274, 381, 616, 838
NlaIII	CATG	2 cut(s)	78, 505
NlaIV	GGNNCC	2 cut(s)	36, 787
NmuCI	GTSAC	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	805
PaqCI	CACCTGC	1 cut(s)	260
PdmI	GAANNNNTTC	2 cut(s)	8, 801
PfeI	GAWTC	7 cut(s)	59, 121, 261, 419, 757, 802, 953
PflMI	CCANNNNNTGG	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	936
PinAI	ACCGGT	2 cut(s)	843, 869
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	1 cut(s)	839
PluTI	GGCGCC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	839
Psp124BI	GAGCTC	3 cut(s)	165, 867, 967
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	2 cut(s)	36, 787
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	3 cut(s)	142, 347, 748
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	4 cut(s)	134, 241, 299, 913
RsaNI	GTAC	4 cut(s)	133, 240, 298, 912
SacI	GAGCTC	3 cut(s)	165, 867, 967
SaqAI	TTAA	2 cut(s)	410, 855
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	5 cut(s)	103, 274, 381, 616, 838
SchI	GAGTC	1 cut(s)	840
ScrFI	CCNGG	2 cut(s)	434, 938
SduI	GDGCHC	3 cut(s)	165, 867, 967
SfaNI	GCATC	3 cut(s)	648, 654, 694
SfcI	CTRYAG	4 cut(s)	63, 184, 652, 957
SfoI	GGCGCC	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	805
Sse9I	AATT	7 cut(s)	83, 313, 407, 713, 728, 814, 900
SsiI	CCGC	2 cut(s)	158, 643
SspDI	GGCGCC	1 cut(s)	34
SstI	GAGCTC	3 cut(s)	165, 867, 967
StyD4I	CCNGG	2 cut(s)	432, 936
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	3 cut(s)	203, 302, 493
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	119, 165, 805
TaqII	GACCGA	1 cut(s)	79
TasI	AATT	7 cut(s)	83, 313, 407, 713, 728, 814, 900
TatI	WGTACW	2 cut(s)	297, 911
TfiI	GAWTC	7 cut(s)	59, 121, 261, 419, 757, 802, 953
Tru1I	TTAA	2 cut(s)	410, 855
Tru9I	TTAA	2 cut(s)	410, 855
TscAI	CASTG	5 cut(s)	133, 307, 490, 787, 841
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 267, 432, 531
TspGWI	ACGGA	3 cut(s)	142, 470, 778
TspRI	CASTG	5 cut(s)	133, 307, 490, 787, 841
Van91I	CCANNNNNTGG	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	2 cut(s)	8, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.