Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014575

Physical Location & Seq

Genomic Coordinates Forward (+)

28970976 .. 28974814

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTGCAATGAGTGGCCTCACTACGAACTCCACTCCTTCTCGATTACTCGCATTTCCAGCACGACGCCGTTTCCACGACCACTCGTCGTCGAGCTCCGTGTTCGTCAGTAAACCTCCTCCCAGAGCTCCTAGACTCGTTTGCATGGCGGAACCCTATTTGATTACAAAGCTGGACTCCGCCGAGAAGACGTGGAAAGATTTATCAGTCAAGCTGGCTGATCCAGATGTCGTGTCAAATCCCAGTGAATACCAGAAGCTTGCGCAGTCTGTGGCAGAGCTTGATGAGGTTGTGACAATCTATAGGGATTTCAAGGACTGCGAGAAGCAGTTAGAAGAGACTAAAGCTTTAGCAAAAGAAGCTGGCAGTGATGAGGATATGGCAGAGATGATATCTTTTGAAGTTGAATCTTTATCCAATCAAATCAAAGAACTGGAAGCGAAGCTCAAGATGCTACTCCTTCCTAGTGACCCTCTTGATGCAAGAAATATAATGCTTGAAGGGCTGGTACTGGTGGTGATGAAGCTGGAATCTGGGCAGGTTGATCGATCTTTCTCTGTTCGTATGTATGAGAAGTACTGTGAGAGGAATAATTGGAGGTTCAGCACAGTCTCAAGCTCAGAGGCTGAAAGAGGAGGATACAAGGCCTATGTGATGGAAGTCAAAGGAAAACGTGTATACAGCAAATTAAAATATGAATCTGGTGTTCATCGGGTTCAACGTGTTCCTCATACAGAAACACAGGGTCGCGTGCATACTTCCACTGCGACTGTTGCAATCATGCCAGAGGCGGATGAAGTTGAGGTGGTTATCGACCCAAAAGATATTGAACTGACAACAGCAAGGTCTGGGGGAGCTGGAGGGCAAAATGTCAACAAGGTGGAGACAGCTGTTGATCTTGTCCATAAACCAACGAGCATCCGCATCTTTTGTAGTGAAAAAAGGTCTCAACTTCAGAACAAGCATCGTGCATTTCAGTTGCTGCGGGCGAAATTGTATAAGATAAAATTGAGAGAGCAGCAGGAGTTGATTAGGAATCAGCGGAAATCGCAGGTTGGTACTGGTTCTCGTGCAGAAAAGATTCGGACATACAACTTTAAGGACAATAGAGTGACCGACCATCGGTTAAAGACAAACTATGAGCTCACCTCTTTTCTTGGTGGCGATATAGATAACGCAATTCAGGCTTGTGTTTCCTTAGAACAGCAAGAACTGCTGGAAGAACTCGCTGAATCTGTAGGAGCGCCCGCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

419

Amino Acids

47.04

Weight (kDa)

7.63

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62910
fragaria_vesca	FvH4_2g25000
malus_domestica	MD03G1280500.v1.1 MD11G1301500.v1.1
prunus_persica	Prupe.8G255000_v2.0.a1
pyrus_communis	pycom03g22220 pycom11g26410
rosa_chinensis	RchiOBHm_Chr6g0292981
rosa_laevigata	RLG00000011977
rosa_multiflora	Rmu_sc0001788.1_g000007
rosa_roxburghii	Rroxscaffold_7G00174500
rosa_rugosa	Rorug06G0231600
rosa_samantha	Rh6AG344400 Rh6BG351700 Rh6CG358900 Rh6DG344500
rosa_wichuraiana	Rw6G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
Acc36I	ACCTGC	2 cut(s)	529, 1042
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	750
AciI	CCGC	7 cut(s)	149, 180, 791, 922, 985, 1042, 1248
AclWI	GGATC	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	938
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	3 cut(s)	510, 578, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	1122
AflIII	ACRYGT	2 cut(s)	673, 721
AgsI	TTSAA	6 cut(s)	313, 401, 407, 500, 719, 830
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	192
Alw21I	GWGCWC	3 cut(s)	98, 130, 1146
Alw26I	GTCTC	4 cut(s)	332, 616, 878, 951
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	2 cut(s)	626, 982
AoxI	GGCC	2 cut(s)	16, 645
ApeKI	GCWGC	3 cut(s)	5, 982, 1018
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspLEI	GCGC	2 cut(s)	265, 1246
AsuHPI	GGTGA	2 cut(s)	529, 1138
BanII	GRGCYC	3 cut(s)	98, 130, 1146
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BauI	CACGAG	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	3 cut(s)	98, 130, 1146
BbvI	GCAGC	2 cut(s)	969, 1030
BccI	CCATC	2 cut(s)	649, 1128
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	4 cut(s)	332, 616, 878, 951
BfaI	CTAG	2 cut(s)	132, 465
BfmI	CTRYAG	2 cut(s)	301, 1236
BfoI	RGCGCY	1 cut(s)	1247
BfuAI	ACCTGC	2 cut(s)	529, 1042
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	3 cut(s)	6, 983, 1019
BlsI	GCNGC	3 cut(s)	7, 984, 1020
BmcAI	AGTACT	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	5 cut(s)	441, 469, 927, 933, 973
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	1133, 1165
BpmI	CTGGAG	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	431, 598
Bsa29I	ATCGAT	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	951
Bsc4I	CCNNNNNNNGG	1 cut(s)	1122
Bse1I	ACTGG	4 cut(s)	243, 438, 516, 1066
Bse3DI	GCAATG	1 cut(s)	15
BseCI	ATCGAT	1 cut(s)	547
BseGI	GGATG	2 cut(s)	799, 918
BseLI	CCNNNNNNNGG	1 cut(s)	1122
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	4 cut(s)	243, 438, 516, 1066
BseRI	GAGGAG	2 cut(s)	108, 648
BseXI	GCAGC	2 cut(s)	969, 1030
BsgI	GTGCAG	1 cut(s)	1092
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	18, 647
BshVI	ATCGAT	1 cut(s)	547
BsiHKAI	GWGCWC	3 cut(s)	98, 130, 1146
BslI	CCNNNNNNNGG	1 cut(s)	1122
BsmAI	GTCTC	4 cut(s)	332, 616, 878, 951
BsnI	GGCC	2 cut(s)	18, 647
Bso31I	GGTCTC	1 cut(s)	951
Bsp1286I	GDGCHC	3 cut(s)	98, 130, 1146
Bsp143I	GATC	4 cut(s)	220, 544, 548, 895
BspACI	CCGC	7 cut(s)	149, 180, 791, 922, 985, 1042, 1248
BspANI	GGCC	2 cut(s)	18, 647
BspCNI	CTCAG	1 cut(s)	632
BspDI	ATCGAT	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	2 cut(s)	529, 1042
BspPI	GGATC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	951
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	243, 438, 516, 1066
BssMI	GATC	4 cut(s)	220, 544, 548, 895
BssNAI	GTATAC	1 cut(s)	679
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	1068
Bst1107I	GTATAC	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	1068
Bst4CI	ACNGT	3 cut(s)	581, 610, 772
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	1213
BstC8I	GCNNGC	7 cut(s)	216, 261, 364, 752, 987, 1248, 1252
BstDEI	CTNAG	2 cut(s)	619, 1198
BstF5I	GGATG	2 cut(s)	799, 918
BstFNI	CGCG	1 cut(s)	750
BstH2I	RGCGCY	1 cut(s)	1247
BstHHI	GCGC	2 cut(s)	265, 1246
BstKTI	GATC	4 cut(s)	223, 547, 551, 898
BstMAI	GTCTC	4 cut(s)	332, 616, 878, 951
BstMBI	GATC	4 cut(s)	220, 544, 548, 895
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 359, 451, 502, 773, 1048, 1184, 1213
BstSFI	CTRYAG	2 cut(s)	301, 1236
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	969, 1030
BstV2I	GAAGAC	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	679
Bsu15I	ATCGAT	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	18, 647
BsuTUI	ATCGAT	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	799, 918
BtsI	GCAGTG	2 cut(s)	373, 762
BtsIMutI	CAGTG	3 cut(s)	250, 373, 762
BveI	ACCTGC	2 cut(s)	529, 1042
Cac8I	GCNNGC	7 cut(s)	216, 261, 364, 752, 987, 1248, 1252
CaiI	CAGNNNCTG	2 cut(s)	626, 982
CfoI	GCGC	2 cut(s)	265, 1246
ClaI	ATCGAT	1 cut(s)	547
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	509, 577, 1059
CviAII	CATG	2 cut(s)	145, 781
CviQI	GTAC	3 cut(s)	509, 577, 1059
DdeI	CTNAG	2 cut(s)	619, 1198
DpnI	GATC	4 cut(s)	222, 546, 550, 897
DpnII	GATC	4 cut(s)	220, 544, 548, 895
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	3 cut(s)	164, 169, 806
Ecl136II	GAGCTC	3 cut(s)	96, 128, 1144
Eco147I	AGGCCT	1 cut(s)	647
Eco24I	GRGCYC	3 cut(s)	98, 130, 1146
Eco31I	GGTCTC	1 cut(s)	951
Eco32I	GATATC	1 cut(s)	393
Eco53kI	GAGCTC	3 cut(s)	96, 128, 1144
Eco57I	CTGAAG	1 cut(s)	938
EcoICRI	GAGCTC	3 cut(s)	96, 128, 1144
EcoRV	GATATC	1 cut(s)	393
EcoT38I	GRGCYC	3 cut(s)	98, 130, 1146
FaeI	CATG	2 cut(s)	148, 784
FatI	CATG	2 cut(s)	144, 780
FauI	CCCGC	2 cut(s)	978, 1255
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	6, 983, 1019
FokI	GGATG	2 cut(s)	806, 905
FriOI	GRGCYC	3 cut(s)	98, 130, 1146
Fsp4HI	GCNGC	3 cut(s)	6, 983, 1019
FspBI	CTAG	2 cut(s)	132, 465
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	2 cut(s)	264, 1245
GluI	GCNGC	3 cut(s)	6, 983, 1019
GsuI	CTGGAG	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	1247
HaeIII	GGCC	2 cut(s)	18, 647
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	265, 1246
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	148, 784
Hin6I	GCGC	2 cut(s)	263, 1244
HinP1I	GCGC	2 cut(s)	263, 1244
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	2 cut(s)	257, 345
HinfI	GANTC	8 cut(s)	135, 176, 407, 530, 698, 1036, 1081, 1232
HphI	GGTGA	2 cut(s)	529, 1138
Hpy166II	GTNNAC	3 cut(s)	113, 679, 874
Hpy188I	TCNGA	3 cut(s)	622, 957, 1086
Hpy188III	TCNNGA	4 cut(s)	42, 224, 448, 476
Hpy8I	GTNNAC	3 cut(s)	113, 679, 874
Hpy99I	CGWCG	3 cut(s)	69, 91, 94
HpyAV	CCTTC	3 cut(s)	48, 470, 494
HpyCH4III	ACNGT	3 cut(s)	581, 610, 772
HpyCH4IV	ACGT	3 cut(s)	191, 673, 721
HpyCH4V	TGCA	7 cut(s)	8, 144, 482, 754, 776, 971, 1073
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 359, 451, 502, 773, 1048, 1184, 1213
HpyF3I	CTNAG	2 cut(s)	619, 1198
HpySE526I	ACGT	3 cut(s)	191, 673, 721
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	148, 784
HspAI	GCGC	2 cut(s)	263, 1244
Kzo9I	GATC	4 cut(s)	220, 544, 548, 895
LmnI	GCTCC	4 cut(s)	101, 133, 854, 1241
Lsp1109I	GCAGC	2 cut(s)	969, 1030
LweI	GCATC	5 cut(s)	441, 469, 927, 933, 973
MaeI	CTAG	2 cut(s)	132, 465
MaeII	ACGT	3 cut(s)	191, 673, 721
MaeIII	GTNAC	3 cut(s)	292, 467, 1111
MalI	GATC	4 cut(s)	222, 546, 550, 897
MboI	GATC	4 cut(s)	220, 544, 548, 895
MboII	GAAGA	3 cut(s)	199, 347, 1232
MhlI	GDGCHC	3 cut(s)	98, 130, 1146
MluCI	AATT	5 cut(s)	592, 686, 992, 1007, 1179
MlyI	GAGTC	2 cut(s)	129, 170
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	3 cut(s)	689, 1098, 1127
MspA1I	CMGCKG	3 cut(s)	890, 1042, 1250
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	8 cut(s)	59, 359, 451, 502, 773, 1048, 1184, 1213
NdeII	GATC	4 cut(s)	220, 544, 548, 895
NlaIII	CATG	2 cut(s)	148, 784
NlaIV	GGNNCC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	3 cut(s)	292, 467, 1111
NsbI	TGCGCA	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	647
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	6 cut(s)	407, 530, 698, 1036, 1081, 1232
PkrI	GCNGC	3 cut(s)	7, 984, 1020
PleI	GAGTC	2 cut(s)	129, 170
PpsI	GAGTC	2 cut(s)	129, 170
Psp124BI	GAGCTC	3 cut(s)	98, 130, 1146
PspN4I	GGNNCC	1 cut(s)	153
PstNI	CAGNNNCTG	2 cut(s)	626, 982
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	3 cut(s)	510, 578, 1060
RsaNI	GTAC	3 cut(s)	509, 577, 1059
SacI	GAGCTC	3 cut(s)	98, 130, 1146
SaqAI	TTAA	3 cut(s)	689, 1098, 1127
SatI	GCNGC	3 cut(s)	6, 983, 1019
Sau3AI	GATC	4 cut(s)	220, 544, 548, 895
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	2 cut(s)	129, 170
SduI	GDGCHC	3 cut(s)	98, 130, 1146
SfaNI	GCATC	5 cut(s)	441, 469, 927, 933, 973
SfcI	CTRYAG	2 cut(s)	301, 1236
SmlI	CTYRAG	2 cut(s)	446, 613
SmoI	CTYRAG	2 cut(s)	446, 613
Sse9I	AATT	5 cut(s)	592, 686, 992, 1007, 1179
SseBI	AGGCCT	1 cut(s)	647
SsiI	CCGC	7 cut(s)	149, 180, 791, 922, 985, 1042, 1248
SspMI	CTAG	2 cut(s)	132, 465
SstI	GAGCTC	3 cut(s)	98, 130, 1146
StuI	AGGCCT	1 cut(s)	647
TaaI	ACNGT	3 cut(s)	581, 610, 772
TaiI	ACGT	3 cut(s)	194, 676, 724
TaqI	TCGA	4 cut(s)	43, 92, 547, 813
TaqII	GACCGA	1 cut(s)	1130
TasI	AATT	5 cut(s)	592, 686, 992, 1007, 1179
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	6 cut(s)	407, 530, 698, 1036, 1081, 1232
Tru1I	TTAA	3 cut(s)	689, 1098, 1127
Tru9I	TTAA	3 cut(s)	689, 1098, 1127
TscAI	CASTG	3 cut(s)	250, 373, 769
TseFI	GTSAC	3 cut(s)	292, 467, 1111
TseI	GCWGC	3 cut(s)	5, 982, 1018
Tsp45I	GTSAC	3 cut(s)	292, 467, 1111
TspDTI	ATGAA	4 cut(s)	536, 698, 711, 810
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	250, 373, 769
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	2 cut(s)	132, 465
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.