AT3G63220

kelch repeat-containing F-box family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010100
Physical Location & Seq
Reverse (-)
23357328 .. 23359291
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63220.1

Sequence Viewer

Length: 1038 bp
ATGTCTGGGCTGCTGGATGGAATCCCCGAAGCAGTGGCTCTGAGATGCCTGGCTCATGTGCCTTTACACCTTCATCCCAATTTAGAACTCGTCTCTCGCTCCTGGCGAGCTGCTATCCGCAGTCATGAGCTCTTCAGAGTCCGTAAAGAGCTCCGATCTTCTGAGCATCTCCTCTGCGTCTGTGCTTTCGATCCTGAGAACATCTGGCAAGTCTACAGTCCCAACTGTGATCGCTGGCTCACCCTCCCTCTCCTTCCTTCTCGTATCCGCCACCTTGCCCATTTCGGTGCTGTCACTACTGCCGGCATGCTCTTTGTCTTAGGCGGTGGCAGCGACGCTGTCAGCCCTGTTACCGGGGATCACGACGGTACCTTTGCTACTGACCAGGTCTGGTCTTACGACTTTGTACAGAGACAGTGGACTCCTCGCGCTTCAATGCTCGTGCCTCGTGCTATGTTCGCCTGCTGCGTTCTTCAAGGGAAGATTGTTGTTGCTGGCGGATTCACCACTTGCAGGAAATCCATATCTGGAGCGGAGATGTATGATCCTGAGAATGACGTCTGGACATCCATCCCAGATCTCCACCAGACTCATAACTCTGCCTGCTCGGGTCTAGTGGTAAACGGGAAAGTCCACGTCTTGCACAAAGGCTTGTCCACGGTGCAGGTTCTTGAGAGCGTTAAACTCGGGTGGGATGTCAAAGACTATGGCTGGCCGCAAGGTCCAATGGTGGTCGTTGAGGACGTGCTTTACGTGATGAGCCATGGGCTGGTGTTCAAGCAAGAAGGTGACACGTGGAAGATGGTTGCATCGGCCTCAGAGTTTAAGCGGAGGATCGGAATGGCGATGACGAGTTTGAGTGATGAGGTTTTGATCGTAGGAGGAGTGATCGGACCTGATAGGCTCAATTGGGACATCAAGCCCTTGTCAGATGTCGACGCTTTGACAGTTGGGAATGATCGTCCGGCCTGGAGGAGTGTGGCGCCGATGACAAGGTGTCGTGGGACGATCCTTGGCTGCACGCAGTTGACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

345

Amino Acids

38.07

Weight (kDa)

6.66

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 74 - 198 1e-08 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 78 - 197 1.8e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 92 - 191 9.8e-07 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 126 - 278 8.2e-17 FKB95, Kelch-repeats domain
Kelch_1 PF01344 149 - 194 4.8e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 561
Acc36I ACCTGC 1 cut(s) 655
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 2 cut(s) 368, 982
AccB7I CCANNNNNTGG 1 cut(s) 769
AccBSI CCGCTC 1 cut(s) 533
AccI GTMKAC 2 cut(s) 213, 936
AccII CGCG 1 cut(s) 429
AciI CCGC 7 cut(s) 118, 268, 324, 498, 533, 716, 829
AclWI GGATC 5 cut(s) 185, 366, 539, 842, 1003
AcoI YGGCCR 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 118
AcvI CACGTG 1 cut(s) 795
AcyI GRCGYC 2 cut(s) 558, 983
AfaI GTAC 2 cut(s) 370, 408
AfiI CCNNNNNNNGG 3 cut(s) 353, 513, 769
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 3 cut(s) 435, 476, 778
AhdI GACNNNNNGTC 1 cut(s) 996
AjiI CACGTC 2 cut(s) 637, 745
AjnI CCWGG 4 cut(s) 48, 101, 384, 968
AluBI AGCT 3 cut(s) 110, 130, 151
AluI AGCT 3 cut(s) 110, 130, 151
Alw21I GWGCWC 2 cut(s) 132, 153
Alw26I GTCTC 2 cut(s) 97, 406
AlwI GGATC 5 cut(s) 185, 366, 539, 842, 1003
Ama87I CYCGRG 2 cut(s) 607, 686
AoxI GGCC 3 cut(s) 713, 813, 966
ApeKI GCWGC 5 cut(s) 10, 110, 330, 465, 1017
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
Asp718I GGTACC 1 cut(s) 368
AspLEI GCGC 2 cut(s) 431, 985
AspS9I GGNCC 2 cut(s) 722, 893
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 232, 496, 800
AvaI CYCGRG 2 cut(s) 607, 686
AvaII GGWCC 2 cut(s) 722, 893
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BanI GGYRCC 2 cut(s) 368, 982
BanII GRGCYC 2 cut(s) 132, 153
BauI CACGAG 2 cut(s) 440, 447
BbrPI CACGTG 1 cut(s) 795
Bbv12I GWGCWC 2 cut(s) 132, 153
BbvI GCAGC 4 cut(s) 97, 342, 452, 1004
BccI CCATC 3 cut(s) 11, 578, 796
BciT130I CCWGG 4 cut(s) 50, 103, 386, 970
BciVI GTATCC 1 cut(s) 275
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 97, 406
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 986
BfuAI ACCTGC 1 cut(s) 655
BfuI GTATCC 1 cut(s) 275
BglII AGATCT 1 cut(s) 577
BisI GCNGC 6 cut(s) 11, 111, 331, 466, 716, 1018
BlsI GCNGC 6 cut(s) 12, 112, 332, 467, 717, 1019
Bme1390I CCNGG 5 cut(s) 50, 103, 355, 386, 970
Bme18I GGWCC 2 cut(s) 722, 893
BmeRI GACNNNNNGTC 1 cut(s) 996
BmeT110I CYCGRG 2 cut(s) 607, 686
BmgBI CACGTC 2 cut(s) 637, 745
BmgT120I GGNCC 2 cut(s) 722, 893
BmiI GGNNCC 2 cut(s) 370, 984
BmrFI CCNGG 5 cut(s) 50, 103, 355, 386, 970
BmsI GCATC 3 cut(s) 35, 175, 818
BpmI CTGGAG 2 cut(s) 549, 991
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 1 cut(s) 355
BsaAI YACGTR 2 cut(s) 754, 795
BsaHI GRCGYC 2 cut(s) 558, 983
BsaJI CCNNGG 4 cut(s) 354, 657, 763, 1012
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 513, 769
Bse118I RCCGGY 1 cut(s) 302
BseBI CCWGG 4 cut(s) 50, 103, 386, 970
BseDI CCNNGG 4 cut(s) 354, 657, 763, 1012
BseGI GGATG 5 cut(s) 22, 73, 566, 570, 700
BseLI CCNNNNNNNGG 3 cut(s) 353, 513, 769
BseMII CTCAG 5 cut(s) 32, 153, 186, 540, 831
BseRI GAGGAG 4 cut(s) 161, 414, 897, 988
BseXI GCAGC 4 cut(s) 97, 342, 452, 1004
BsgI GTGCAG 2 cut(s) 683, 1003
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 715, 815, 968
BshNI GGYRCC 2 cut(s) 368, 982
BsiHKAI GWGCWC 2 cut(s) 132, 153
BsiHKCI CYCGRG 2 cut(s) 607, 686
BsiSI CCGG 3 cut(s) 303, 354, 965
BslFI GGGAC 3 cut(s) 204, 926, 1018
BslI CCNNNNNNNGG 3 cut(s) 353, 513, 769
BsmAI GTCTC 2 cut(s) 97, 406
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 3 cut(s) 204, 926, 1018
BsnI GGCC 3 cut(s) 715, 815, 968
BsoBI CYCGRG 2 cut(s) 607, 686
Bsp1286I GDGCHC 2 cut(s) 132, 153
Bsp1407I TGTACA 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 7 cut(s) 118, 268, 324, 498, 533, 716, 829
BspANI GGCC 3 cut(s) 715, 815, 968
BspCNI CTCAG 5 cut(s) 33, 154, 187, 541, 830
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 370, 984
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 5 cut(s) 185, 366, 539, 842, 1003
BspQI GCTCTTC 1 cut(s) 137
BspT107I GGYRCC 2 cut(s) 368, 982
BsrBI CCGCTC 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 354, 657, 763, 1012
BssNI GRCGYC 2 cut(s) 558, 983
BssSI CACGAG 2 cut(s) 440, 447
BssT1I CCWWGG 2 cut(s) 763, 1012
Bst2BI CACGAG 2 cut(s) 440, 447
Bst2UI CCWGG 4 cut(s) 50, 103, 386, 970
Bst4CI ACNGT 6 cut(s) 218, 227, 368, 417, 661, 949
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 2 cut(s) 558, 983
BstAUI TGTACA 1 cut(s) 406
BstBAI YACGTR 2 cut(s) 754, 795
BstC8I GCNNGC 9 cut(s) 108, 236, 304, 308, 463, 496, 604, 713, 1022
BstDEI CTNAG 6 cut(s) 41, 162, 195, 319, 549, 817
BstDSI CCRYGG 2 cut(s) 657, 763
BstF5I GGATG 5 cut(s) 22, 73, 566, 570, 700
BstFNI CGCG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 986
BstHHI GCGC 2 cut(s) 431, 985
BstMAI GTCTC 2 cut(s) 97, 406
BstMWI GCNNNNNNNGC 2 cut(s) 330, 458
BstNI CCWGG 4 cut(s) 50, 103, 386, 970
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 5 cut(s) 48, 101, 353, 384, 968
BstSFI CTRYAG 1 cut(s) 214
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 4 cut(s) 97, 342, 452, 1004
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 3 cut(s) 715, 815, 968
BtgI CCRYGG 2 cut(s) 657, 763
BtgZI GCGATG 1 cut(s) 860
BtrI CACGTC 2 cut(s) 637, 745
BtsCI GGATG 5 cut(s) 22, 73, 566, 570, 700
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 422
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 9 cut(s) 108, 236, 304, 308, 463, 496, 604, 713, 1022
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 431, 985
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 722, 893
CseI GACGC 3 cut(s) 166, 344, 947
CsiI ACCWGGT 1 cut(s) 384
Csp6I GTAC 2 cut(s) 369, 407
CviAII CATG 4 cut(s) 56, 125, 307, 764
CviQI GTAC 2 cut(s) 369, 407
DdeI CTNAG 6 cut(s) 41, 162, 195, 319, 549, 817
DinI GGCGCC 1 cut(s) 984
DriI GACNNNNNGTC 1 cut(s) 996
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 137
Eam1105I GACNNNNNGTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 2 cut(s) 257, 513
Ecl136II GAGCTC 2 cut(s) 130, 151
Eco130I CCWWGG 2 cut(s) 763, 1012
Eco24I GRGCYC 2 cut(s) 132, 153
Eco47I GGWCC 2 cut(s) 722, 893
Eco53kI GAGCTC 2 cut(s) 130, 151
Eco57I CTGAAG 1 cut(s) 118
Eco72I CACGTG 1 cut(s) 795
Eco88I CYCGRG 2 cut(s) 607, 686
EcoICRI GAGCTC 2 cut(s) 130, 151
EcoRII CCWGG 4 cut(s) 48, 101, 384, 968
EcoT14I CCWWGG 2 cut(s) 763, 1012
EcoT38I GRGCYC 2 cut(s) 132, 153
EgeI GGCGCC 1 cut(s) 984
EheI GGCGCC 1 cut(s) 984
ErhI CCWWGG 2 cut(s) 763, 1012
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 4 cut(s) 59, 128, 310, 767
FaiI YATR 9 cut(s) 57, 126, 308, 455, 524, 543, 594, 708, 765
FaqI GGGAC 3 cut(s) 204, 926, 1018
FatI CATG 4 cut(s) 55, 124, 306, 763
FblI GTMKAC 2 cut(s) 213, 936
Fnu4HI GCNGC 6 cut(s) 11, 111, 331, 466, 716, 1018
FokI GGATG 5 cut(s) 29, 60, 553, 557, 707
FriOI GRGCYC 2 cut(s) 132, 153
Fsp4HI GCNGC 6 cut(s) 11, 111, 331, 466, 716, 1018
FspBI CTAG 1 cut(s) 614
GlaI GCGC 2 cut(s) 430, 984
GluI GCNGC 6 cut(s) 11, 111, 331, 466, 716, 1018
GsuI CTGGAG 2 cut(s) 549, 991
HaeII RGCGCY 1 cut(s) 986
HaeIII GGCC 3 cut(s) 715, 815, 968
HapII CCGG 3 cut(s) 303, 354, 965
HgaI GACGC 3 cut(s) 166, 344, 947
HhaI GCGC 2 cut(s) 431, 985
Hin1I GRCGYC 2 cut(s) 558, 983
Hin1II CATG 4 cut(s) 59, 128, 310, 767
Hin6I GCGC 2 cut(s) 429, 983
HinP1I GCGC 2 cut(s) 429, 983
HincII GTYRAC 2 cut(s) 937, 1029
HindII GTYRAC 2 cut(s) 937, 1029
HinfI GANTC 5 cut(s) 21, 138, 421, 501, 589
HpaII CCGG 3 cut(s) 303, 354, 965
HphI GGTGA 3 cut(s) 232, 496, 800
Hpy166II GTNNAC 7 cut(s) 214, 420, 622, 634, 657, 937, 1029
Hpy188I TCNGA 9 cut(s) 42, 137, 155, 163, 820, 839, 893, 931, 1037
Hpy188III TCNNGA 7 cut(s) 125, 194, 362, 528, 548, 562, 671
Hpy8I GTNNAC 7 cut(s) 214, 420, 622, 634, 657, 937, 1029
Hpy99I CGWCG 3 cut(s) 338, 368, 941
HpyAV CCTTC 4 cut(s) 80, 263, 267, 779
HpyCH4III ACNGT 6 cut(s) 218, 227, 368, 417, 661, 949
HpyCH4IV ACGT 5 cut(s) 558, 636, 744, 753, 794
HpyCH4V TGCA 5 cut(s) 513, 643, 664, 809, 1020
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 458
HpyF3I CTNAG 6 cut(s) 41, 162, 195, 319, 549, 817
HpySE526I ACGT 5 cut(s) 558, 636, 744, 753, 794
Hsp92I GRCGYC 2 cut(s) 558, 983
Hsp92II CATG 4 cut(s) 59, 128, 310, 767
HspAI GCGC 2 cut(s) 429, 983
KasI GGCGCC 1 cut(s) 982
KpnI GGTACC 1 cut(s) 372
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 3 cut(s) 104, 156, 530
Lsp1109I GCAGC 4 cut(s) 97, 342, 452, 1004
LweI GCATC 3 cut(s) 35, 175, 818
MabI ACCWGGT 1 cut(s) 384
MaeI CTAG 1 cut(s) 614
MaeII ACGT 5 cut(s) 558, 636, 744, 753, 794
MaeIII GTNAC 3 cut(s) 292, 349, 788
MbiI CCGCTC 1 cut(s) 533
MboII GAAGA 5 cut(s) 124, 150, 464, 493, 811
MfeI CAATTG 1 cut(s) 907
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 132, 153
MluCI AATT 2 cut(s) 79, 907
Mly113I GGCGCC 1 cut(s) 983
MlyI GAGTC 3 cut(s) 147, 415, 583
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 2 cut(s) 681, 825
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 3 cut(s) 303, 354, 965
MspR9I CCNGG 5 cut(s) 50, 103, 355, 386, 970
MunI CAATTG 1 cut(s) 907
MvaI CCWGG 4 cut(s) 50, 103, 386, 970
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 330, 458
NaeI GCCGGC 1 cut(s) 304
NarI GGCGCC 1 cut(s) 983
NciI CCSGG 1 cut(s) 355
NcoI CCATGG 1 cut(s) 763
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 4 cut(s) 59, 128, 310, 767
NlaIV GGNNCC 2 cut(s) 370, 984
NmuCI GTSAC 2 cut(s) 292, 788
NspI RCATGY 1 cut(s) 310
PaeI GCATGC 1 cut(s) 310
PagI TCATGA 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 4 cut(s) 103, 465, 741, 750
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 21, 501
PflFI GACNNNGTC 2 cut(s) 338, 386
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 6 cut(s) 12, 112, 332, 467, 717, 1019
PleI GAGTC 3 cut(s) 146, 415, 583
PluTI GGCGCC 1 cut(s) 986
PmaCI CACGTG 1 cut(s) 795
PmlI CACGTG 1 cut(s) 795
PpsI GAGTC 3 cut(s) 146, 415, 583
Ppu21I YACGTR 2 cut(s) 754, 795
Psp124BI GAGCTC 2 cut(s) 132, 153
Psp6I CCWGG 4 cut(s) 48, 101, 384, 968
PspCI CACGTG 1 cut(s) 795
PspGI CCWGG 4 cut(s) 48, 101, 384, 968
PspN4I GGNNCC 2 cut(s) 370, 984
PspPI GGNCC 2 cut(s) 722, 893
PsuI RGATCY 1 cut(s) 577
PsyI GACNNNGTC 2 cut(s) 338, 386
RsaI GTAC 2 cut(s) 370, 408
RsaNI GTAC 2 cut(s) 369, 407
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 2 cut(s) 132, 153
SalI GTCGAC 1 cut(s) 935
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 681, 825
SatI GCNGC 6 cut(s) 11, 111, 331, 466, 716, 1018
Sau96I GGNCC 2 cut(s) 722, 893
SchI GAGTC 3 cut(s) 147, 415, 583
ScrFI CCNGG 5 cut(s) 50, 103, 355, 386, 970
SduI GDGCHC 2 cut(s) 132, 153
SexAI ACCWGGT 1 cut(s) 384
SfaNI GCATC 3 cut(s) 35, 175, 818
SfcI CTRYAG 1 cut(s) 214
SfoI GGCGCC 1 cut(s) 984
SinI GGWCC 2 cut(s) 722, 893
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SphI GCATGC 1 cut(s) 310
Sse9I AATT 2 cut(s) 79, 907
SsiI CCGC 7 cut(s) 118, 268, 324, 498, 533, 716, 829
SspDI GGCGCC 1 cut(s) 982
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 2 cut(s) 132, 153
StyD4I CCNGG 5 cut(s) 48, 101, 353, 384, 968
StyI CCWWGG 2 cut(s) 763, 1012
TaaI ACNGT 6 cut(s) 218, 227, 368, 417, 661, 949
TaiI ACGT 5 cut(s) 561, 639, 747, 756, 797
TaqI TCGA 2 cut(s) 189, 936
TasI AATT 2 cut(s) 79, 907
TatI WGTACW 1 cut(s) 406
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 2 cut(s) 21, 501
Tru1I TTAA 2 cut(s) 681, 825
Tru9I TTAA 2 cut(s) 681, 825
TscAI CASTG 2 cut(s) 39, 422
TseFI GTSAC 2 cut(s) 292, 788
TseI GCWGC 5 cut(s) 10, 110, 330, 465, 1017
Tsp45I GTSAC 2 cut(s) 292, 788
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 39, 422
Tth111I GACNNNGTC 2 cut(s) 338, 386
Van91I CCANNNNNTGG 1 cut(s) 769
VpaK11BI GGWCC 2 cut(s) 722, 893
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 213, 936
XspI CTAG 1 cut(s) 614
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.