Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010100

Physical Location & Seq

Genomic Coordinates Forward (+)

21312619 .. 21313125

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTTGCATGCTGTGTTTTAGGTGGAAAGATTGTGGTTGCAGGGGGTTTAACCAGCTGTCGGAAATCAATCTCTTTAGCAGAAATGTATGACCCTGACAACGATGTGTGGGCTCCAATTCCTGATCTACATTTATCTCATAATGCTGCATGCTCAGGGATAGTGATTGGAGAAAAGATGTACGTCTTGCACAGGGGTTTATCAACGGTGCAAGTCTTCGACAATGTGGGGCTTCAATGGACGGTAGAGGATTATGGTTGGCAACAGGGTCCAATGACAGTCATTAAGGGTGCACTTTATGTGATGAGCCATGGAGTTATCTCCAGGCAAGACAGAGAATCAGTGAAGGTATTGGTTTCGGCTTCTGAGTTTGGTGGCAGAGTTGGGTTTGCAATGGCTGGGCTAGGAGATGAAATTTATGTGATTGGTGGGGTGATCCTCTCTGAACATGGGACATCTGAAATCAAGCAAATATCAGACGTTGATGTTCTCATCGATCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

169

Amino Acids

18.13

Weight (kDa)

5.24

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_1	PF01344	2 - 43	8.8e-10	Kelch motif
Kelch_FKB95	PF25210	3 - 111	3.5e-08	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63220 AT3G63220 AT3G63220
fragaria_vesca	FvH4_2g23221
malus_domestica	MD03G1261800.v1.1 MD11G1282500.v1.1
prunus_persica	Prupe.8G238100_v2.0.a1 Prupe.8G238100_v2.0.a1 Prupe.8G238100_v2.0.a1
pyrus_communis	pycom03g20950 pycom11g25020
rosa_chinensis	RchiOBHm_Chr6g0290531
rosa_laevigata	RLG00000012206
rosa_roxburghii	Rroxscaffold_7G00176970
rosa_rugosa	Rorug06G0212900 Rorug06G0212900
rosa_samantha	Rh6AG323600 Rh6BG331000 Rh6CG337200 Rh6DG324200
rosa_wichuraiana	Rw6G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	414
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	430
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	325
BfaI	CTAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	114, 270
BmrFI	CCNGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	168, 357
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	115, 295
Bsp143I	GATC	3 cut(s)	124, 435, 496
Bsp19I	CCATGG	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	167, 358
BspDI	ATCGAT	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	114, 270
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	124, 435, 496
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	3 cut(s)	208, 244, 280
BstC8I	GCNNGC	2 cut(s)	10, 151
BstDEI	CTNAG	2 cut(s)	154, 366
BstDSI	CCRYGG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	127, 438, 499
BstMBI	GATC	3 cut(s)	124, 435, 496
BstMCI	CGRYCG	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	2 cut(s)	12, 153
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	495
BsuTUI	ATCGAT	1 cut(s)	495
BtgI	CCRYGG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	10, 151
Cfr13I	GGNCC	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	4 cut(s)	9, 150, 311, 449
CviJI	RGCY	7 cut(s)	57, 113, 232, 309, 362, 398, 403
CviKI_1	RGCY	7 cut(s)	57, 113, 232, 309, 362, 398, 403
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	154, 366
DpnI	GATC	3 cut(s)	126, 437, 498
DpnII	GATC	3 cut(s)	124, 435, 496
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	4 cut(s)	12, 153, 314, 452
FaiI	YATR	9 cut(s)	10, 90, 141, 151, 255, 300, 312, 420, 450
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	8, 149, 310, 448
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	307
Hin1II	CATG	4 cut(s)	12, 153, 314, 452
HinfI	GANTC	1 cut(s)	338
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	6 cut(s)	63, 367, 445, 460, 478, 501
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	208, 244, 280
HpyCH4IV	ACGT	2 cut(s)	183, 480
HpyCH4V	TGCA	7 cut(s)	8, 41, 149, 190, 211, 293, 392
HpyF3I	CTNAG	2 cut(s)	154, 366
HpySE526I	ACGT	2 cut(s)	183, 480
Hsp92II	CATG	4 cut(s)	12, 153, 314, 452
Kzo9I	GATC	3 cut(s)	124, 435, 496
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	183, 480
MalI	GATC	3 cut(s)	126, 437, 498
MboI	GATC	3 cut(s)	124, 435, 496
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	115, 295
MluCI	AATT	2 cut(s)	117, 414
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	241, 449, 495
MseI	TTAA	2 cut(s)	50, 285
MspA1I	CMGCKG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	3 cut(s)	124, 435, 496
NlaIII	CATG	4 cut(s)	12, 153, 314, 452
NlaIV	GGNNCC	2 cut(s)	114, 270
NspI	RCATGY	2 cut(s)	12, 153
PaeI	GCATGC	2 cut(s)	12, 153
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	148
Ple19I	CGATCG	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	114, 270
PspPI	GGNCC	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	50, 285
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	124, 435, 496
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	115, 295
SetI	ASST	6 cut(s)	25, 59, 186, 351, 483, 506
SinI	GGWCC	1 cut(s)	269
SphI	GCATGC	2 cut(s)	12, 153
Sse9I	AATT	2 cut(s)	117, 414
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	208, 244, 280
TaiI	ACGT	2 cut(s)	186, 483
TaqI	TCGA	2 cut(s)	219, 495
TasI	AATT	2 cut(s)	117, 414
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	50, 285
Tru9I	TTAA	2 cut(s)	50, 285
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	348
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	2 cut(s)	12, 153
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.