RLG00000012206

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010100
Physical Location & Seq
Reverse (-)
16284380 .. 16288010
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012206

Sequence Viewer

Length: 1179 bp
ATGCCATGGACTGAAGGAGATGAGAAGGAACAAGATGGTAGTAGGGAATTAGGAATATCCCCAAATGTTGTTTATTGGGAATTTGAGCACAAAGCCCAAATCTTTGTGTTCTTCACCCGTTGCTGTCTTTTCAGATTGCTCGTGCCAGTGCTGTACCCAAGTCTTCCTGACGCCGTTGCCCTTAGGTGCCTTGCTTGGGTTCCCTTCCATCTCCATCCTAAGTTGGAGCTTGTTTCCCGTTCCTGGAAAGCTGCAATTCATAGCCCTGAACTGTTTAGAGCTCGACAGGAGCTTGGCTCATGTGAAGATTTATTATGTGTGTCTGCTTTTGATCCAGAGAATTTATGGCAGCTGTATGACCCTCTTCGAGACCTTTGGATTACACTCCCTGTTCTCCCTTCTAGAATTAAAATCCTTTCTAATTTCGGTGCTGTCTCCACTGCTGGAAAGCTGTTTGTGCTTGGAGGTGGCAGTGGTGCTGTTGACCCACAGACCGGTGACCAAGATGGGAGTTTTGCAACCAATGAGGTGTGGTCATATGACCCTGTAACTAGGCAATGGAACTCACGTGCATCTATGCTTGTGCCTCGTGCAATGTTTGCATGCTGTGTTTTAGATGGAAAAATTGTTGTTGCTGGCGGTTTTACCAGCTGTCGAAAGTCAATTTCTCAAGCAGAAATGTATGACCCTGACAAGGATGTGTGGATTCCAATACCTGATCTCCATCGTACTCATAATTCAGCATGCTCAGGAATAGTGATCAGAGGAAAGGTGCACGTCTTGCACAAGGGTTTATCAACGGTGCAAGTCTTAGACACTGTGGTGAATGGGTGGACTGTAGAGGATTATGGTTGGCAACAAGGTCCAATGACGGCTGTTAAGGGTGCACTTTATGTGATGAGCAACGGACTCATCTGCAAGCAAGACAGGGAAGTGAGGAAGGTTTTGGTTTCAGCATCTGAGATTGGACGCAGAATTGGGTTTGCAATGACTGGACTCGGGGATGAAATTTATGTGATTGGTGGGGTGATTATCCCTGATCAGTGGAACTTGGAGATCAAGCCAATGTCTGATGTTGATGTTCTGACAATTGGGGGTGAAAGACCTACTTGGCGCCAGGCAGCTCCAATGACACGGTGCCGTGGAACTATTCTTGGTTGTACACAGTTGAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

393

Amino Acids

43.62

Weight (kDa)

6.26

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 124 - 240 5.5e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 124 - 244 1.4e-09 Calicin, beta-propeller domain
Kelch_1 PF01344 140 - 193 2.1e-07 Kelch motif
Beta-prop_FBX42 PF13415 144 - 237 2.1e-06 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 173 - 301 1e-13 FKB95, Kelch-repeats domain
Kelch_1 PF01344 196 - 241 3.4e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 186, 1113, 1137
AciI CCGC 1 cut(s) 639
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 4 cut(s) 80, 340, 1008, 1173
AcuI CTGAAG 1 cut(s) 33
AcvI CACGTG 1 cut(s) 569
AcyI GRCGYC 2 cut(s) 171, 1114
AfaI GTAC 3 cut(s) 155, 730, 1162
AfiI CCNNNNNNNGG 4 cut(s) 196, 243, 494, 694
AgeI ACCGGT 1 cut(s) 494
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 2 cut(s) 242, 1116
AleI CACNNNNGTG 1 cut(s) 821
AluBI AGCT 8 cut(s) 229, 251, 281, 292, 352, 451, 651, 1124
AluI AGCT 8 cut(s) 229, 251, 281, 292, 352, 451, 651, 1124
Alw21I GWGCWC 4 cut(s) 90, 283, 777, 889
Alw26I GTCTC 2 cut(s) 363, 439
Alw44I GTGCAC 2 cut(s) 773, 885
AlwI GGATC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 998
ApaLI GTGCAC 2 cut(s) 773, 885
ApeKI GCWGC 3 cut(s) 251, 349, 1121
ApoI RAATTY 4 cut(s) 80, 340, 1008, 1173
AsiGI ACCGGT 1 cut(s) 494
AspLEI GCGC 1 cut(s) 1116
AspS9I GGNCC 1 cut(s) 863
AsuHPI GGTGA 5 cut(s) 106, 509, 835, 1039, 1109
AvaI CYCGRG 1 cut(s) 998
AvaII GGWCC 1 cut(s) 863
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 2 cut(s) 777, 889
BanI GGYRCC 3 cut(s) 186, 1113, 1137
BanII GRGCYC 1 cut(s) 283
BauI CACGAG 2 cut(s) 140, 588
BbrPI CACGTG 1 cut(s) 569
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 4 cut(s) 90, 283, 777, 889
BbvI GCAGC 3 cut(s) 238, 361, 1133
BccI CCATC 6 cut(s) 29, 216, 222, 500, 611, 732
BceAI ACGGC 3 cut(s) 158, 888, 1125
BciT130I CCWGG 2 cut(s) 244, 1118
BclI TGATCA 2 cut(s) 759, 1039
BcoDI GTCTC 2 cut(s) 363, 439
BfaI CTAG 2 cut(s) 402, 552
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 1 cut(s) 1117
BisI GCNGC 3 cut(s) 252, 350, 1122
BlsI GCNGC 3 cut(s) 253, 351, 1123
Bme1390I CCNGG 2 cut(s) 244, 1118
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 998
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 863
BmiI GGNNCC 4 cut(s) 188, 201, 1115, 1139
BmrFI CCNGG 2 cut(s) 244, 1118
BmsI GCATC 2 cut(s) 581, 965
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu10I CCTNAGC 1 cut(s) 748
BpuEI CTTGAG 1 cut(s) 654
BsaAI YACGTR 1 cut(s) 569
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 2 cut(s) 171, 1114
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 5, 1141
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 243, 494, 694
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 146, 997
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 3 cut(s) 563, 600, 993
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 2 cut(s) 244, 1118
BseDI CCNNGG 2 cut(s) 5, 1141
BseGI GGATG 3 cut(s) 214, 703, 1009
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 4 cut(s) 196, 243, 494, 694
BseMI GCAATG 3 cut(s) 563, 600, 993
BseMII CTCAG 2 cut(s) 762, 951
BseNI ACTGG 2 cut(s) 146, 997
BseSI GKGCMC 2 cut(s) 777, 889
BseXI GCAGC 3 cut(s) 238, 361, 1133
BshNI GGYRCC 3 cut(s) 186, 1113, 1137
BshTI ACCGGT 1 cut(s) 494
BsiHKAI GWGCWC 4 cut(s) 90, 283, 777, 889
BsiHKCI CYCGRG 1 cut(s) 998
BsiSI CCGG 1 cut(s) 495
BslI CCNNNNNNNGG 4 cut(s) 196, 243, 494, 694
BsmAI GTCTC 2 cut(s) 363, 439
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 998
Bsp1286I GDGCHC 4 cut(s) 90, 283, 777, 889
Bsp1407I TGTACA 1 cut(s) 1160
Bsp143I GATC 5 cut(s) 331, 718, 759, 1039, 1056
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 1 cut(s) 639
BspCNI CTCAG 2 cut(s) 761, 952
BspLI GGNNCC 4 cut(s) 188, 201, 1115, 1139
BspPI GGATC 1 cut(s) 326
BspT107I GGYRCC 3 cut(s) 186, 1113, 1137
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 3 cut(s) 563, 600, 993
BsrFI RCCGGY 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 1160
BsrI ACTGG 2 cut(s) 146, 997
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 5, 1141
BssMI GATC 5 cut(s) 331, 718, 759, 1039, 1056
BssNI GRCGYC 2 cut(s) 171, 1114
BssSI CACGAG 2 cut(s) 140, 588
BssT1I CCWWGG 1 cut(s) 5
Bst2BI CACGAG 2 cut(s) 140, 588
Bst2UI CCWGG 2 cut(s) 244, 1118
Bst4CI ACNGT 6 cut(s) 273, 802, 820, 838, 1137, 1167
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 2 cut(s) 171, 1114
BstAPI GCANNNNNTGC 2 cut(s) 599, 781
BstAUI TGTACA 1 cut(s) 1160
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 4 cut(s) 604, 637, 745, 920
BstDEI CTNAG 5 cut(s) 182, 219, 748, 811, 960
BstDSI CCRYGG 2 cut(s) 5, 1141
BstEII GGTNACC 1 cut(s) 497
BstF5I GGATG 3 cut(s) 214, 703, 1009
BstH2I RGCGCY 1 cut(s) 1117
BstHHI GCGC 1 cut(s) 1116
BstKTI GATC 5 cut(s) 334, 721, 762, 1042, 1059
BstMAI GTCTC 2 cut(s) 363, 439
BstMBI GATC 5 cut(s) 331, 718, 759, 1039, 1056
BstMWI GCNNNNNNNGC 3 cut(s) 457, 599, 781
BstNI CCWGG 2 cut(s) 244, 1118
BstNSI RCATGY 2 cut(s) 606, 747
BstPI GGTNACC 1 cut(s) 497
BstSCI CCNGG 2 cut(s) 242, 1116
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 2 cut(s) 777, 889
BstV1I GCAGC 3 cut(s) 238, 361, 1133
BstV2I GAAGAC 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 182
BtgI CCRYGG 2 cut(s) 5, 1141
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 3 cut(s) 214, 703, 1009
BtsI GCAGTG 2 cut(s) 438, 478
BtsIMutI CAGTG 5 cut(s) 153, 438, 478, 816, 1049
Cac8I GCNNGC 4 cut(s) 604, 637, 745, 920
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 1 cut(s) 1116
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 863
CseI GACGC 2 cut(s) 179, 978
Csp6I GTAC 3 cut(s) 154, 729, 1161
CspAI ACCGGT 1 cut(s) 494
CviAII CATG 4 cut(s) 6, 300, 603, 744
CviQI GTAC 3 cut(s) 154, 729, 1161
DdeI CTNAG 5 cut(s) 182, 219, 748, 811, 960
DinI GGCGCC 1 cut(s) 1115
DpnI GATC 5 cut(s) 333, 720, 761, 1041, 1058
DpnII GATC 5 cut(s) 331, 718, 759, 1039, 1056
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 863
Eco53kI GAGCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 33
Eco72I CACGTG 1 cut(s) 569
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 998
Eco91I GGTNACC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 242, 1116
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 1115
EheI GGCGCC 1 cut(s) 1115
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 4 cut(s) 9, 303, 606, 747
FalI AAGNNNNNCTT 2 cut(s) 1093, 1125
FatI CATG 4 cut(s) 5, 299, 602, 743
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 2 cut(s) 759, 1039
Fnu4HI GCNGC 3 cut(s) 252, 350, 1122
FokI GGATG 3 cut(s) 201, 710, 1016
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 252, 350, 1122
FspBI CTAG 2 cut(s) 402, 552
GlaI GCGC 1 cut(s) 1115
GluI GCNGC 3 cut(s) 252, 350, 1122
HaeII RGCGCY 1 cut(s) 1117
HapII CCGG 1 cut(s) 495
HgaI GACGC 2 cut(s) 179, 978
HhaI GCGC 1 cut(s) 1116
Hin1I GRCGYC 2 cut(s) 171, 1114
Hin1II CATG 4 cut(s) 9, 303, 606, 747
Hin6I GCGC 1 cut(s) 1114
HinP1I GCGC 1 cut(s) 1114
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 706, 909, 996
HpaII CCGG 1 cut(s) 495
HphI GGTGA 5 cut(s) 106, 509, 835, 1039, 1109
Hpy166II GTNNAC 5 cut(s) 484, 775, 834, 887, 1163
Hpy188I TCNGA 5 cut(s) 134, 764, 961, 1072, 1086
Hpy188III TCNNGA 5 cut(s) 167, 335, 368, 402, 750
Hpy8I GTNNAC 5 cut(s) 484, 775, 834, 887, 1163
HpyAV CCTTC 5 cut(s) 8, 19, 214, 408, 934
HpyCH4III ACNGT 6 cut(s) 273, 802, 820, 838, 1137, 1167
HpyCH4IV ACGT 2 cut(s) 568, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 599, 781
HpyF3I CTNAG 5 cut(s) 182, 219, 748, 811, 960
HpySE526I ACGT 2 cut(s) 568, 777
Hsp92I GRCGYC 2 cut(s) 171, 1114
Hsp92II CATG 4 cut(s) 9, 303, 606, 747
HspAI GCGC 1 cut(s) 1114
KasI GGCGCC 1 cut(s) 1113
Ksp22I TGATCA 2 cut(s) 759, 1039
Kzo9I GATC 5 cut(s) 331, 718, 759, 1039, 1056
LmnI GCTCC 3 cut(s) 226, 289, 1129
Lsp1109I GCAGC 3 cut(s) 238, 361, 1133
LweI GCATC 2 cut(s) 581, 965
MaeI CTAG 2 cut(s) 402, 552
MaeII ACGT 2 cut(s) 568, 777
MaeIII GTNAC 2 cut(s) 497, 547
MalI GATC 5 cut(s) 333, 720, 761, 1041, 1058
MboI GATC 5 cut(s) 331, 718, 759, 1039, 1056
MboII GAAGA 4 cut(s) 103, 155, 317, 356
MfeI CAATTG 1 cut(s) 1089
MhlI GDGCHC 4 cut(s) 90, 283, 777, 889
Mly113I GGCGCC 1 cut(s) 1114
MlyI GAGTC 2 cut(s) 903, 990
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 7 cut(s) 372, 458, 520, 597, 758, 835, 930
MseI TTAA 2 cut(s) 408, 879
MslI CAYNNNNRTG 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 352, 651
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 2 cut(s) 244, 1118
MunI CAATTG 1 cut(s) 1089
MvaI CCWGG 2 cut(s) 244, 1118
MwoI GCNNNNNNNGC 3 cut(s) 457, 599, 781
NarI GGCGCC 1 cut(s) 1114
NcoI CCATGG 1 cut(s) 5
NdeI CATATG 1 cut(s) 538
NdeII GATC 5 cut(s) 331, 718, 759, 1039, 1056
NlaIII CATG 4 cut(s) 9, 303, 606, 747
NlaIV GGNNCC 4 cut(s) 188, 201, 1115, 1139
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 2 cut(s) 606, 747
OliI CACNNNNGTG 1 cut(s) 821
PaeI GCATGC 2 cut(s) 606, 747
PfeI GAWTC 1 cut(s) 706
PfoI TCCNGGA 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 494
PkrI GCNGC 3 cut(s) 253, 351, 1123
PleI GAGTC 2 cut(s) 903, 990
PluTI GGCGCC 1 cut(s) 1117
PmaCI CACGTG 1 cut(s) 569
PmlI CACGTG 1 cut(s) 569
PpsI GAGTC 2 cut(s) 903, 990
Ppu21I YACGTR 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 242, 1116
PspCI CACGTG 1 cut(s) 569
PspEI GGTNACC 1 cut(s) 497
PspGI CCWGG 2 cut(s) 242, 1116
PspN4I GGNNCC 4 cut(s) 188, 201, 1115, 1139
PspPI GGNCC 1 cut(s) 863
PstNI CAGNNNCTG 1 cut(s) 959
PvuII CAGCTG 2 cut(s) 352, 651
RsaI GTAC 3 cut(s) 155, 730, 1162
RsaNI GTAC 3 cut(s) 154, 729, 1161
RseI CAYNNNNRTG 1 cut(s) 821
SacI GAGCTC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 408, 879
SatI GCNGC 3 cut(s) 252, 350, 1122
Sau3AI GATC 5 cut(s) 331, 718, 759, 1039, 1056
Sau96I GGNCC 1 cut(s) 863
SchI GAGTC 2 cut(s) 903, 990
ScrFI CCNGG 2 cut(s) 244, 1118
SduI GDGCHC 4 cut(s) 90, 283, 777, 889
SfaNI GCATC 2 cut(s) 581, 965
SfcI CTRYAG 1 cut(s) 837
SfoI GGCGCC 1 cut(s) 1115
SinI GGWCC 1 cut(s) 863
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
SphI GCATGC 2 cut(s) 606, 747
SsiI CCGC 1 cut(s) 639
SspDI GGCGCC 1 cut(s) 1113
SspMI CTAG 2 cut(s) 402, 552
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 242, 1116
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 6 cut(s) 273, 802, 820, 838, 1137, 1167
TaiI ACGT 2 cut(s) 571, 780
TaqI TCGA 3 cut(s) 283, 367, 655
TatI WGTACW 1 cut(s) 1160
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 2 cut(s) 408, 879
Tru9I TTAA 2 cut(s) 408, 879
TscAI CASTG 5 cut(s) 153, 445, 478, 823, 1049
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 3 cut(s) 251, 349, 1121
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 248, 1020
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 5 cut(s) 153, 445, 478, 823, 1049
VneI GTGCAC 2 cut(s) 773, 885
VpaK11BI GGWCC 1 cut(s) 863
XapI RAATTY 4 cut(s) 80, 340, 1008, 1173
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 2 cut(s) 606, 747
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XspI CTAG 2 cut(s) 402, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.