Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006303

Physical Location & Seq

Genomic Coordinates Forward (+)

412107 .. 413810

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00955.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTGATGATTTCTTATAAGTTAAATTTGGTTTTGATCATAATCTTGATCGGAGGATCTTTTAACGACCTACGAGTTTCTTCTGCCGCGGCTAATTTGACCGAAACTTGTAACGGAATATGTGGTGGATTGACTCTGTCTTATCCCTTTGGGTTTTCTCTTGGTTGTCCGATCCAATTCAATTGCTCTGCTGCGGGCCAAGGGGCGAAGATCGGAGAGTTTCCCGTCCAAAACGTGACGGAAAACAGTATATTGGTCGGCGTTCCAACCAATTGTACTCGGAAGATTGAAGACATGACTCCGCTTTTCGGCAAGCAGTTCACACCATCGTCGGAGAACAGTTTCTTAATGGAGAATTGTGTGAATCCAACCAATGGCTGCTCCATAAACCAAAGATTCCTTGATAAACAGCTGAAAAGTTGTGAATCCACGGGAAATATAAGCTGTTTTCCGTCAGATACGAGTTCAAAAAGTTCAGAATTTCTCAGTATGAAGGAATTGACGAATAGCTCGTGCCGTTTGTTGTACACGTCGATAGCTCTCGAGTCTGTAGGTGTGAATGTGGGGATAGCGGTAGAGTTTGAACGAGTTCGGTTAGGTTGGTGGCTAATGGGAGGTTGCGAAAACGGAACTTGCGTAGTAAACGCAAATTGTACAGATGTTTACACTCCCGATGGATATGCAGGACACCGGTGCTCATGTCTTGAGGGTTACCACGGAGACGGATACATCAATCCTTGCTTGAAACTGAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

252

Amino Acids

27.12

Weight (kDa)

5.25

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23450 AT2G23450 AT4G00955 AT4G00955
fragaria_vesca	FvH4_1g14540 FvH4_1g14540 FvH4_1g14540 FvH4_1g14540
malus_domestica	MD02G1159100.v1.1 MD15G1273700.v1.1
prunus_persica	Prupe.5G021600_v2.0.a1 Prupe.7G145100_v2.0.a1 Prupe.7G145100_v2.0.a1 Prupe.7G145100_v2.0.a1
pyrus_communis	pycom02g12520 pycom15g23660
rosa_chinensis	RchiOBHm_Chr2g0103291
rosa_laevigata	RLG00000017220
rosa_multiflora	Rmu_sc0006743.1_g000008
rosa_roxburghii	Rroxscaffold_2G00139770
rosa_rugosa	Rorug02G0113100
rosa_samantha	Rh2AG161900 Rh2BG168800 Rh2CG168800 Rh2DG167700
rosa_wichuraiana	Rw0G019380 Rw2G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccII	CGCG	1 cut(s)	89
AciI	CCGC	5 cut(s)	87, 89, 194, 302, 572
AclWI	GGATC	2 cut(s)	64, 166
AcsI	RAATTY	2 cut(s)	25, 479
AfaI	GTAC	3 cut(s)	277, 527, 655
AfiI	CCNNNNNNNGG	2 cut(s)	308, 374
AflIII	ACRYGT	1 cut(s)	528
AgeI	ACCGGT	1 cut(s)	690
AgsI	TTSAA	5 cut(s)	181, 290, 468, 584, 745
AjiI	CACGTC	1 cut(s)	531
AluBI	AGCT	4 cut(s)	412, 444, 510, 539
AluI	AGCT	4 cut(s)	412, 444, 510, 539
Alw21I	GWGCWC	1 cut(s)	698
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	64, 166
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	191, 378
ApoI	RAATTY	2 cut(s)	25, 479
AsiGI	ACCGGT	1 cut(s)	690
Asp700I	GAANNNNTTC	2 cut(s)	341, 588
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	542
BauI	CACGAG	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	698
BbvI	GCAGC	2 cut(s)	178, 365
BccI	CCATC	2 cut(s)	334, 668
BceAI	ACGGC	1 cut(s)	501
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciVI	GTATCC	1 cut(s)	719
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	719
BisI	GCNGC	4 cut(s)	87, 90, 192, 379
BlsI	GCNGC	4 cut(s)	88, 91, 193, 380
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	87, 199, 429, 715
BsaWI	WCCGGW	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 374
Bse118I	RCCGGY	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	4 cut(s)	87, 199, 429, 715
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	308, 374
BseMII	CTCAG	2 cut(s)	499, 740
BseXI	GCAGC	2 cut(s)	178, 365
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	698
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	691
BslI	CCNNNNNNNGG	2 cut(s)	308, 374
BsmAI	GTCTC	1 cut(s)	714
BsmBI	CGTCTC	1 cut(s)	714
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	2 cut(s)	525, 653
Bsp143I	GATC	5 cut(s)	36, 48, 56, 171, 210
BspACI	CCGC	5 cut(s)	87, 89, 194, 302, 572
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	498, 741
BspFNI	CGCG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	64, 166
BsrFI	RCCGGY	1 cut(s)	690
BsrGI	TGTACA	2 cut(s)	525, 653
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	4 cut(s)	87, 199, 429, 715
BssMI	GATC	5 cut(s)	36, 48, 56, 171, 210
BssSI	CACGAG	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	248, 341
BstAUI	TGTACA	2 cut(s)	525, 653
BstC8I	GCNNGC	2 cut(s)	196, 314
BstDEI	CTNAG	2 cut(s)	485, 749
BstDSI	CCRYGG	3 cut(s)	87, 429, 715
BstEII	GGTNACC	1 cut(s)	710
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	5 cut(s)	39, 51, 59, 174, 213
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	5 cut(s)	36, 48, 56, 171, 210
BstPI	GGTNACC	1 cut(s)	710
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	178, 365
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	198
BtgI	CCRYGG	3 cut(s)	87, 429, 715
BtrI	CACGTC	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	196, 314
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	196
Cfr42I	CCGCGG	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	276, 526, 654
CspAI	ACCGGT	1 cut(s)	690
CviAII	CATG	2 cut(s)	295, 699
CviJI	RGCY	8 cut(s)	92, 198, 378, 412, 444, 510, 539, 607
CviKI_1	RGCY	8 cut(s)	92, 198, 378, 412, 444, 510, 539, 607
CviQI	GTAC	3 cut(s)	276, 526, 654
DdeI	CTNAG	2 cut(s)	485, 749
DpnI	GATC	5 cut(s)	38, 50, 58, 173, 212
DpnII	GATC	5 cut(s)	36, 48, 56, 171, 210
Eco130I	CCWWGG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	714
FaeI	CATG	2 cut(s)	298, 702
FatI	CATG	2 cut(s)	294, 698
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	87, 90, 192, 379
Fsp4HI	GCNGC	4 cut(s)	87, 90, 192, 379
GluI	GCNGC	4 cut(s)	87, 90, 192, 379
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	691
Hin1II	CATG	2 cut(s)	298, 702
HinfI	GANTC	6 cut(s)	133, 298, 364, 396, 425, 545
HpaII	CCGG	1 cut(s)	691
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	321, 528, 643, 664
Hpy188I	TCNGA	7 cut(s)	53, 171, 215, 282, 334, 457, 478
Hpy188III	TCNNGA	4 cut(s)	46, 542, 671, 704
Hpy8I	GTNNAC	4 cut(s)	321, 528, 643, 664
Hpy99I	CGWCG	2 cut(s)	334, 535
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	2 cut(s)	248, 341
HpyCH4IV	ACGT	2 cut(s)	234, 530
HpyCH4V	TGCA	1 cut(s)	683
HpyF3I	CTNAG	2 cut(s)	485, 749
HpySE526I	ACGT	2 cut(s)	234, 530
Hsp92II	CATG	2 cut(s)	298, 702
Ksp22I	TGATCA	1 cut(s)	36
KspI	CCGCGG	1 cut(s)	90
Kzo9I	GATC	5 cut(s)	36, 48, 56, 171, 210
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	2 cut(s)	669, 704
Lsp1109I	GCAGC	2 cut(s)	178, 365
MaeII	ACGT	2 cut(s)	234, 530
MaeIII	GTNAC	3 cut(s)	110, 235, 710
MalI	GATC	5 cut(s)	38, 50, 58, 173, 212
MboI	GATC	5 cut(s)	36, 48, 56, 171, 210
MboII	GAAGA	4 cut(s)	72, 220, 295, 302
MfeI	CAATTG	2 cut(s)	181, 271
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	9 cut(s)	25, 94, 176, 181, 271, 355, 479, 497, 649
MlyI	GAGTC	3 cut(s)	127, 292, 554
MmeI	TCCRAC	3 cut(s)	290, 312, 392
MnlI	CCTC	4 cut(s)	47, 608, 700, 746
MroXI	GAANNNNTTC	2 cut(s)	341, 588
MseI	TTAA	3 cut(s)	23, 63, 347
MspA1I	CMGCKG	2 cut(s)	89, 412
MspI	CCGG	1 cut(s)	691
MunI	CAATTG	2 cut(s)	181, 271
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	5 cut(s)	36, 48, 56, 171, 210
NlaIII	CATG	2 cut(s)	298, 702
NmuCI	GTSAC	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	2 cut(s)	509, 633
PdmI	GAANNNNTTC	2 cut(s)	341, 588
PfeI	GAWTC	3 cut(s)	364, 396, 425
PflFI	GACNNNGTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	690
PkrI	GCNGC	4 cut(s)	88, 91, 193, 380
PleI	GAGTC	3 cut(s)	127, 292, 553
PpsI	GAGTC	3 cut(s)	127, 292, 553
PsiI	TTATAA	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	710
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	3 cut(s)	277, 527, 655
RsaNI	GTAC	3 cut(s)	276, 526, 654
SacII	CCGCGG	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	23, 63, 347
SatI	GCNGC	4 cut(s)	87, 90, 192, 379
Sau3AI	GATC	5 cut(s)	36, 48, 56, 171, 210
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	3 cut(s)	127, 292, 554
SduI	GDGCHC	1 cut(s)	698
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	542
Sfr303I	CCGCGG	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	690
SgrBI	CCGCGG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	542, 704
SmoI	CTYRAG	2 cut(s)	542, 704
Sse9I	AATT	9 cut(s)	25, 94, 176, 181, 271, 355, 479, 497, 649
SsiI	CCGC	5 cut(s)	87, 89, 194, 302, 572
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	248, 341
TaiI	ACGT	2 cut(s)	237, 533
TaqI	TCGA	2 cut(s)	533, 543
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	9 cut(s)	25, 94, 176, 181, 271, 355, 479, 497, 649
TatI	WGTACW	3 cut(s)	275, 525, 653
TauI	GCSGC	2 cut(s)	89, 92
TfiI	GAWTC	3 cut(s)	364, 396, 425
Tru1I	TTAA	3 cut(s)	23, 63, 347
Tru9I	TTAA	3 cut(s)	23, 63, 347
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	191, 378
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	6 cut(s)	129, 254, 441, 642, 732, 738
Tth111I	GACNNNGTC	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	374
XapI	RAATTY	2 cut(s)	25, 479
XhoI	CTCGAG	1 cut(s)	542
XmnI	GAANNNNTTC	2 cut(s)	341, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.