Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006303

Physical Location & Seq

Genomic Coordinates Forward (+)

9661146 .. 9661526

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCTTTCTCTAAGGCCAATGGAGCTCGTCATAGCCTTTTCCGCTTTCGTAAAATGTGGTTGGAACATAAAGATTTTCGAAGTTTTGTAGCGCAATGTTGGTCTTCAGTTAATTTCCAAGGGTGCCCATTATCATTGTTGCAGCATAAATTACGTGTTTTGCGTAAAGCTCTTAGGGCCTGGAATTGGGAGGTCTTTGGAGATATTCATCATAGAGTTCGTGATGATCTTGCAGCCTTAACTGATCTTCAGCAGAACATTGCTGCTTCAGGGGGCTCTGATGCAGATTTTGCTAAAGAGAATGAACTTCAGGCCAATTTGAATGAGTCTATTCGGTTGCAAGAGCTCTTTTGGAAAGAGAAGTCGCGGTTAAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.75

Weight (kDa)

9.75

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23450 AT2G23450 AT4G00955 AT4G00955
fragaria_vesca	FvH4_1g14540 FvH4_1g14540 FvH4_1g14540 FvH4_1g14540
malus_domestica	MD02G1159100.v1.1 MD15G1273700.v1.1
prunus_persica	Prupe.5G021600_v2.0.a1 Prupe.7G145100_v2.0.a1 Prupe.7G145100_v2.0.a1 Prupe.7G145100_v2.0.a1
pyrus_communis	pycom02g12520 pycom15g23660
rosa_chinensis	RchiOBHm_Chr2g0103291
rosa_laevigata	RLG00000017220
rosa_multiflora	Rmu_sc0006743.1_g000008
rosa_roxburghii	Rroxscaffold_2G00139770
rosa_rugosa	Rorug02G0113100
rosa_samantha	Rh2AG161900 Rh2BG168800 Rh2CG168800 Rh2DG167700
rosa_wichuraiana	Rw0G019380 Rw2G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	367
AciI	CCGC	2 cut(s)	43, 367
AcuI	CTGAAG	4 cut(s)	90, 233, 252, 293
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	3 cut(s)	26, 170, 346
AluI	AGCT	3 cut(s)	26, 170, 346
Alw21I	GWGCWC	2 cut(s)	28, 348
AoxI	GGCC	3 cut(s)	15, 177, 312
ApeKI	GCWGC	3 cut(s)	142, 233, 263
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	3 cut(s)	28, 278, 348
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	28, 348
BbvI	GCAGC	3 cut(s)	154, 245, 250
BciT130I	CCWGG	1 cut(s)	181
BisI	GCNGC	3 cut(s)	143, 234, 264
BlsI	GCNGC	3 cut(s)	144, 235, 265
Bme1390I	CCNGG	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	101, 258
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	118
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	101, 258
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	154, 245, 250
Bsh1236I	CGCG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	17, 179, 314
BshNI	GGYRCC	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	28, 348
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	3 cut(s)	17, 179, 314
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	4 cut(s)	28, 128, 278, 348
Bsp143I	GATC	2 cut(s)	226, 244
BspACI	CCGC	2 cut(s)	43, 367
BspANI	GGCC	3 cut(s)	17, 179, 314
BspFNI	CGCG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	101, 258
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	226, 244
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	12, 173
BstFNI	CGCG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	229, 247
BstMBI	GATC	2 cut(s)	226, 244
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 42, 176, 290
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	154, 245, 250
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	17, 179, 314
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	177
CviJI	RGCY	9 cut(s)	17, 26, 36, 170, 179, 236, 276, 314, 346
CviKI_1	RGCY	9 cut(s)	17, 26, 36, 170, 179, 236, 276, 314, 346
DdeI	CTNAG	2 cut(s)	12, 173
DpnI	GATC	2 cut(s)	228, 246
DpnII	GATC	2 cut(s)	226, 244
Ecl136II	GAGCTC	2 cut(s)	26, 346
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	3 cut(s)	28, 278, 348
Eco53kI	GAGCTC	2 cut(s)	26, 346
Eco57I	CTGAAG	4 cut(s)	90, 233, 252, 293
EcoICRI	GAGCTC	2 cut(s)	26, 346
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	3 cut(s)	28, 278, 348
ErhI	CCWWGG	1 cut(s)	118
FaiI	YATR	4 cut(s)	33, 69, 147, 213
Fnu4HI	GCNGC	3 cut(s)	143, 234, 264
FriOI	GRGCYC	3 cut(s)	28, 278, 348
Fsp4HI	GCNGC	3 cut(s)	143, 234, 264
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	143, 234, 264
HaeIII	GGCC	3 cut(s)	17, 179, 314
HhaI	GCGC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	142, 233, 284, 340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 42, 176, 290
HpyF3I	CTNAG	2 cut(s)	12, 173
HpySE526I	ACGT	1 cut(s)	154
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	226, 244
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	4 cut(s)	166, 193, 255, 296
Lsp1109I	GCAGC	3 cut(s)	154, 245, 250
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	154
MalI	GATC	2 cut(s)	228, 246
MboI	GATC	2 cut(s)	226, 244
MboII	GAAGA	2 cut(s)	96, 239
MhlI	GDGCHC	4 cut(s)	28, 128, 278, 348
MluCI	AATT	4 cut(s)	112, 149, 184, 316
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	1 cut(s)	184
MseI	TTAA	4 cut(s)	111, 239, 371, 379
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	4 cut(s)	23, 42, 176, 290
NdeII	GATC	2 cut(s)	226, 244
NlaIV	GGNNCC	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	144, 235, 265
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	155
Psp124BI	GAGCTC	2 cut(s)	28, 348
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	177
SacI	GAGCTC	2 cut(s)	28, 348
SaqAI	TTAA	4 cut(s)	111, 239, 371, 379
SatI	GCNGC	3 cut(s)	143, 234, 264
Sau3AI	GATC	2 cut(s)	226, 244
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	4 cut(s)	28, 128, 278, 348
SetI	ASST	5 cut(s)	28, 157, 172, 195, 348
SfaNI	GCATC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	79
Sse9I	AATT	4 cut(s)	112, 149, 184, 316
SsiI	CCGC	2 cut(s)	43, 367
SstI	GAGCTC	2 cut(s)	28, 348
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	79
TasI	AATT	4 cut(s)	112, 149, 184, 316
Tru1I	TTAA	4 cut(s)	111, 239, 371, 379
Tru9I	TTAA	4 cut(s)	111, 239, 371, 379
TseI	GCWGC	3 cut(s)	142, 233, 263
TspDTI	ATGAA	2 cut(s)	197, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.