AT4G01935

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014512
Physical Location & Seq
Forward (+)
841057 .. 842364
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01935.1

Sequence Viewer

Length: 771 bp
ATGTTTGTCTTAGCGATATCTTCTCCTTCAACGACTCTCATCAAACCATTAAAACGAAATGGGCCAAACCGGTCACCGGTTCGAAAAATCCTTTGCCTGAGCCAGAGGAAGCAGAGCAAAACCAGTACCGGCAAATCTTGGATCGTCCCAGTAAGTCTCTCTCTTTTTGGTTCAGGCTTCGTCTTGGGTCCTCTTCTCGATGGTATCCACTCACGTGTCGATCTCGTGGTTTACCAAAACGGAGCTTTTCAAATCGGTCCCCTTCATACAAACATCTGGGTACCGTTCTTGCTTGGCTTATTTTACTGTACAGTAGGTTTACTACAACTCCTATTGGATGAGACAACCTCTGCAAGTCCTCCACGTGGTAGCCTGGACAAAACCGTAATTTCACTCTTAGCATTGATGTTCTTCTTAGAGCTAAGTGCTGAAATGTACAAAGCTGGAGTTTCAGACAACATAGAAGCTTACATTCTATTTGCCTTAGCAGAATTTATTTGGTTCTCTTTGGATAGAACTTGGATTTGCTTCACCATTGCCACTCTCCTTGGTGTCGCCTGTCCTTTAGCCGAAATCCCCATCATGCAATTCTTCCATCTGTGGTACTATCCAGAAGCAAACATAGAAATCTTTGGCCAGGGACTGGTTACGTGGACAACAACTTGCTACTTTGTCTACACACCGTTCTTGATCAACCTGGCAAGATGGCTAAGGACAGTTATGGAGAGGACGACTATTGAAGTGGACATTAGCTCAAACAAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INSIG

Protein Analysis

256

Amino Acids

28.79

Weight (kDa)

7.62

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01935
fragaria_vesca FvH4_1g26780
malus_domestica MD09G1286700.v1.1
prunus_persica Prupe.3G006900_v2.0.a1
pyrus_communis pycom09g19380
rosa_chinensis RchiOBHm_Chr3g0487001
rosa_laevigata RLG00000023040
rosa_multiflora Rmu_sc0005856.1_g000001 Rmu_sc0009825.1_g000004 Rmu_sc0027023.1_g000002
rosa_roxburghii Rroxscaffold_6G00395260
rosa_rugosa Rorug03G0229100
rosa_samantha Rh3AG278600 Rh3BG314400 Rh3CG312800 Rh3DG309300
rosa_wichuraiana Rw0G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 643
AccI GTMKAC 1 cut(s) 675
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 1 cut(s) 491
AcvI CACGTG 2 cut(s) 215, 365
AfaI GTAC 5 cut(s) 127, 282, 310, 437, 605
AfiI CCNNNNNNNGG 3 cut(s) 76, 365, 643
AflIII ACRYGT 1 cut(s) 214
AgeI ACCGGT 2 cut(s) 69, 76
AgsI TTSAA 3 cut(s) 30, 251, 740
AjnI CCWGG 3 cut(s) 372, 636, 696
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 5 cut(s) 245, 421, 443, 467, 753
AluI AGCT 5 cut(s) 245, 421, 443, 467, 753
Alw26I GTCTC 2 cut(s) 161, 335
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 643
AoxI GGCC 2 cut(s) 62, 634
ApoI RAATTY 1 cut(s) 491
AsiGI ACCGGT 2 cut(s) 69, 76
Asp718I GGTACC 1 cut(s) 280
AspS9I GGNCC 3 cut(s) 62, 188, 257
AsuHPI GGTGA 2 cut(s) 66, 523
AsuII TTCGAA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 188, 257
BalI TGGCCA 1 cut(s) 636
BanI GGYRCC 1 cut(s) 280
BauI CACGAG 1 cut(s) 224
BbrPI CACGTG 2 cut(s) 215, 365
BccI CCATC 4 cut(s) 194, 587, 603, 699
BciT130I CCWGG 3 cut(s) 374, 638, 698
BciVI GTATCC 1 cut(s) 215
BclI TGATCA 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 161, 335
BfuI GTATCC 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 374, 638, 698
Bme18I GGWCC 2 cut(s) 188, 257
BmgT120I GGNCC 3 cut(s) 62, 188, 257
BmiI GGNNCC 3 cut(s) 189, 259, 282
BmrFI CCNGG 3 cut(s) 374, 638, 698
BmrI ACTGGG 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 3 cut(s) 98, 484, 710
Bpu14I TTCGAA 1 cut(s) 82
BsaAI YACGTR 3 cut(s) 215, 365, 651
BsaJI CCNNGG 2 cut(s) 547, 637
BsaWI WCCGGW 2 cut(s) 69, 76
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 365, 643
Bse118I RCCGGY 3 cut(s) 69, 76, 128
Bse1I ACTGG 3 cut(s) 123, 149, 648
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 3 cut(s) 374, 638, 698
BseDI CCNNGG 2 cut(s) 547, 637
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 3 cut(s) 76, 365, 643
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 3 cut(s) 123, 149, 648
BshFI GGCC 2 cut(s) 64, 636
BshNI GGYRCC 1 cut(s) 280
BshTI ACCGGT 2 cut(s) 69, 76
BsiSI CCGG 3 cut(s) 70, 77, 129
BslFI GGGAC 3 cut(s) 131, 243, 654
BslI CCNNNNNNNGG 3 cut(s) 76, 365, 643
BsmAI GTCTC 2 cut(s) 161, 335
BsmFI GGGAC 3 cut(s) 131, 243, 654
BsnI GGCC 2 cut(s) 64, 636
Bsp119I TTCGAA 1 cut(s) 82
Bsp1407I TGTACA 2 cut(s) 308, 435
Bsp143I GATC 3 cut(s) 141, 220, 690
BspANI GGCC 2 cut(s) 64, 636
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 189, 259, 282
BspPI GGATC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 3 cut(s) 69, 76, 128
BsrGI TGTACA 2 cut(s) 308, 435
BsrI ACTGG 3 cut(s) 123, 149, 648
BssAI RCCGGY 3 cut(s) 69, 76, 128
BssECI CCNNGG 2 cut(s) 547, 637
BssMI GATC 3 cut(s) 141, 220, 690
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 547
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 3 cut(s) 374, 638, 698
Bst4CI ACNGT 6 cut(s) 285, 308, 313, 385, 684, 718
Bst6I CTCTTC 1 cut(s) 198
BstAUI TGTACA 2 cut(s) 308, 435
BstBAI YACGTR 3 cut(s) 215, 365, 651
BstBI TTCGAA 1 cut(s) 82
BstDEI CTNAG 7 cut(s) 10, 98, 397, 415, 422, 484, 710
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 3 cut(s) 144, 223, 693
BstMAI GTCTC 2 cut(s) 161, 335
BstMBI GATC 3 cut(s) 141, 220, 690
BstNI CCWGG 3 cut(s) 374, 638, 698
BstPI GGTNACC 1 cut(s) 72
BstSCI CCNGG 3 cut(s) 372, 636, 696
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 2 cut(s) 64, 636
BtsCI GGATG 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 643
Cfr10I RCCGGY 3 cut(s) 69, 76, 128
Cfr13I GGNCC 3 cut(s) 62, 188, 257
Csp6I GTAC 5 cut(s) 126, 281, 309, 436, 604
CspAI ACCGGT 2 cut(s) 69, 76
CspCI CAANNNNNGTGG 2 cut(s) 529, 564
CviAII CATG 1 cut(s) 583
CviQI GTAC 5 cut(s) 126, 281, 309, 436, 604
DdeI CTNAG 7 cut(s) 10, 98, 397, 415, 422, 484, 710
DpnI GATC 3 cut(s) 143, 222, 692
DpnII GATC 3 cut(s) 141, 220, 690
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 547
Eco32I GATATC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 188, 257
Eco72I CACGTG 2 cut(s) 215, 365
Eco91I GGTNACC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 72
EcoRII CCWGG 3 cut(s) 372, 636, 696
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 1 cut(s) 586
FaiI YATR 5 cut(s) 267, 461, 584, 623, 722
FaqI GGGAC 3 cut(s) 131, 243, 654
FatI CATG 1 cut(s) 582
FbaI TGATCA 1 cut(s) 690
FblI GTMKAC 1 cut(s) 675
FokI GGATG 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 64, 636
HapII CCGG 3 cut(s) 70, 77, 129
Hin1II CATG 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 1 cut(s) 34
HpaII CCGG 3 cut(s) 70, 77, 129
HphI GGTGA 2 cut(s) 66, 523
Hpy166II GTNNAC 5 cut(s) 232, 320, 654, 676, 745
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 3 cut(s) 197, 611, 688
Hpy8I GTNNAC 5 cut(s) 232, 320, 654, 676, 745
HpyAV CCTTC 2 cut(s) 36, 272
HpyCH4III ACNGT 6 cut(s) 285, 308, 313, 385, 684, 718
HpyCH4IV ACGT 3 cut(s) 214, 364, 650
HpyCH4V TGCA 2 cut(s) 353, 586
HpyF3I CTNAG 7 cut(s) 10, 98, 397, 415, 422, 484, 710
HpySE526I ACGT 3 cut(s) 214, 364, 650
Hsp92II CATG 1 cut(s) 586
KpnI GGTACC 1 cut(s) 284
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 3 cut(s) 141, 220, 690
LmnI GCTCC 1 cut(s) 242
MaeII ACGT 3 cut(s) 214, 364, 650
MaeIII GTNAC 2 cut(s) 72, 646
MalI GATC 3 cut(s) 143, 222, 692
MboI GATC 3 cut(s) 141, 220, 690
MboII GAAGA 4 cut(s) 12, 185, 403, 583
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 3 cut(s) 387, 491, 587
MluNI TGGCCA 1 cut(s) 636
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 5 cut(s) 99, 201, 358, 369, 720
Mox20I TGGCCA 1 cut(s) 636
MscI TGGCCA 1 cut(s) 636
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 636
MspI CCGG 3 cut(s) 70, 77, 129
MspR9I CCNGG 3 cut(s) 374, 638, 698
MvaI CCWGG 3 cut(s) 374, 638, 698
NdeII GATC 3 cut(s) 141, 220, 690
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 3 cut(s) 189, 259, 282
NmuCI GTSAC 1 cut(s) 72
NspV TTCGAA 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 213
PflMI CCANNNNNTGG 1 cut(s) 643
PinAI ACCGGT 2 cut(s) 69, 76
PleI GAGTC 1 cut(s) 28
PmaCI CACGTG 2 cut(s) 215, 365
PmlI CACGTG 2 cut(s) 215, 365
PpsI GAGTC 1 cut(s) 28
Ppu21I YACGTR 3 cut(s) 215, 365, 651
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 3 cut(s) 372, 636, 696
PspCI CACGTG 2 cut(s) 215, 365
PspEI GGTNACC 1 cut(s) 72
PspGI CCWGG 3 cut(s) 372, 636, 696
PspN4I GGNNCC 3 cut(s) 189, 259, 282
PspPI GGNCC 3 cut(s) 62, 188, 257
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 643
RsaI GTAC 5 cut(s) 127, 282, 310, 437, 605
RsaNI GTAC 5 cut(s) 126, 281, 309, 436, 604
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 3 cut(s) 141, 220, 690
Sau96I GGNCC 3 cut(s) 62, 188, 257
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 374, 638, 698
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 2 cut(s) 188, 257
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 3 cut(s) 387, 491, 587
StyD4I CCNGG 3 cut(s) 372, 636, 696
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 6 cut(s) 285, 308, 313, 385, 684, 718
TaiI ACGT 3 cut(s) 217, 367, 653
TaqI TCGA 3 cut(s) 82, 198, 219
TaqII GACCGA 1 cut(s) 245
TasI AATT 3 cut(s) 387, 491, 587
TatI WGTACW 2 cut(s) 308, 435
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 188, 257
XapI RAATTY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.