Prupe.3G006900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014512
Physical Location & Seq
Forward (+)
418090 .. 419720
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G006900.1

Sequence Viewer

Length: 780 bp
ATGCAAGCCCTAATTGTTACGGGCTCCTCCTGCGTTCTTCACAATTTCCCTAACAATAACAATGCCAAGTGCAAACATGTTTTACCTGCTACTATCAGGCCTTCCTGCAATTTGAGAAATCAAAACACAACCAGAAGAAGCAGCCTTGGAACCGCTTGGCCTTCCATCTCATTTGCACTTTTCGGGTCAGGTTTTTTCTTGGGTCCTTTGATCGATGGACTCCATTCAAGGGTAGAGCTTGTGGCATACCAAAACGGGTCTATCAATATTGGTCCTCTTCACACAAACATCTGGGTTCCTGTTTTGCTGGGTCTGTTCTACTGCACTGTTGGGTTGCTTCAACTCTTCTTGGATGAGAATGAGAGGGCCCCTTTAAACAGTCCAGAGGCCAACCAACAGAAAACGATTGCTTCTTTTCTAGCACTTGTGCTATTTATAGAGTTGAGCGCTGAACTCTACAAAGCCGGAACCGCAGATAATATTGAAGCTTACCTACTATTTGCAGCGGCAGAGTTCATATGGTTTTCCGTGGACAGGACATGGTTCGGCTTCCTTCTCGCAAGCATCATCGGAATTGCCTGCCCGCTGGCTGAGATTCCATTAATGAAGTTTTTCCACCTTTGGCATTATCCACAAGCAAATGTTGAAATATTTGGGCAGGGACTAGTTAGTTGGACACTCACTTGCTACTTTGTTTACACTCTGTTTTTGATCAATTTTTCACGTTGGCTGAAGTCGGTGATCACTGCTGTCGCAGATACGGAGGACAAGTCGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INSIG

Protein Analysis

260

Amino Acids

28.86

Weight (kDa)

6.29

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01935
fragaria_vesca FvH4_1g26780
malus_domestica MD09G1286700.v1.1
prunus_persica Prupe.3G006900_v2.0.a1
pyrus_communis pycom09g19380
rosa_chinensis RchiOBHm_Chr3g0487001
rosa_laevigata RLG00000023040
rosa_multiflora Rmu_sc0005856.1_g000001 Rmu_sc0009825.1_g000004 Rmu_sc0027023.1_g000002
rosa_roxburghii Rroxscaffold_6G00395260
rosa_rugosa Rorug03G0229100
rosa_samantha Rh3AG278600 Rh3BG314400 Rh3CG312800 Rh3DG309300
rosa_wichuraiana Rw0G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 773
AciI CCGC 4 cut(s) 153, 471, 506, 584
AcuI CTGAAG 1 cut(s) 752
AfeI AGCGCT 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 229, 534
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 228, 341, 485, 647
AhlI ACTAGT 1 cut(s) 664
AluBI AGCT 2 cut(s) 238, 488
AluI AGCT 2 cut(s) 238, 488
Aor51HI AGCGCT 1 cut(s) 448
AoxI GGCC 4 cut(s) 98, 158, 366, 387
ApaI GGGCCC 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 141, 503
AseI ATTAAT 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 4 cut(s) 203, 272, 366, 367
AsuHPI GGTGA 1 cut(s) 751
AvaII GGWCC 2 cut(s) 203, 272
BaeGI GKGCMC 1 cut(s) 370
BanII GRGCYC 2 cut(s) 26, 370
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbvI GCAGC 2 cut(s) 153, 515
BccI CCATC 2 cut(s) 173, 209
BclI TGATCA 2 cut(s) 711, 741
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 2 cut(s) 419, 665
BfoI RGCGCY 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 3 cut(s) 142, 504, 507
BlsI GCNGC 3 cut(s) 143, 505, 508
Bme18I GGWCC 2 cut(s) 203, 272
BmgT120I GGNCC 4 cut(s) 203, 272, 366, 367
BmiI GGNNCC 7 cut(s) 25, 151, 204, 297, 368, 369, 469
BmsI GCATC 1 cut(s) 573
Bsa29I ATCGAT 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 145, 528
BsaXI ACNNNNNCTCC 1 cut(s) 755
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 534
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 145, 528
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 229, 534
BseMII CTCAG 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 2 cut(s) 153, 515
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 4 cut(s) 100, 160, 368, 389
BshVI ATCGAT 1 cut(s) 213
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 2 cut(s) 229, 534
BsmFI GGGAC 1 cut(s) 675
BsnI GGCC 4 cut(s) 100, 160, 368, 389
Bsp120I GGGCCC 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 26, 370
Bsp143I GATC 3 cut(s) 210, 711, 741
BspACI CCGC 4 cut(s) 153, 471, 506, 584
BspANI GGCC 4 cut(s) 100, 160, 368, 389
BspCNI CTCAG 1 cut(s) 583
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 7 cut(s) 25, 151, 204, 297, 368, 369, 469
BspMI ACCTGC 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 145, 528
BssMI GATC 3 cut(s) 210, 711, 741
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 328, 380
Bst6I CTCTTC 2 cut(s) 282, 350
BstC8I GCNNGC 5 cut(s) 6, 562, 580, 584, 588
BstDEI CTNAG 2 cut(s) 591, 777
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 3 cut(s) 213, 714, 744
BstMBI GATC 3 cut(s) 210, 711, 741
BstMWI GCNNNNNNNGC 2 cut(s) 30, 470
BstNSI RCATGY 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 153, 515
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 4 cut(s) 100, 160, 368, 389
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 2 cut(s) 324, 744
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 5 cut(s) 6, 562, 580, 584, 588
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 4 cut(s) 203, 272, 366, 367
ClaI ATCGAT 1 cut(s) 213
CviAII CATG 2 cut(s) 77, 540
DdeI CTNAG 2 cut(s) 591, 777
DpnI GATC 3 cut(s) 212, 713, 743
DpnII GATC 3 cut(s) 210, 711, 741
DraI TTTAAA 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 282, 350
EarI CTCTTC 2 cut(s) 282, 350
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 26, 370
Eco47I GGWCC 2 cut(s) 203, 272
Eco47III AGCGCT 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 752
EcoO109I RGGNCCY 3 cut(s) 203, 366, 367
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 2 cut(s) 26, 370
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 80, 543
FaiI YATR 6 cut(s) 78, 247, 437, 518, 520, 541
FaqI GGGAC 1 cut(s) 675
FatI CATG 2 cut(s) 76, 539
FauI CCCGC 1 cut(s) 591
FauNDI CATATG 1 cut(s) 518
FbaI TGATCA 2 cut(s) 711, 741
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 3 cut(s) 142, 504, 507
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 2 cut(s) 26, 370
Fsp4HI GCNGC 3 cut(s) 142, 504, 507
FspBI CTAG 2 cut(s) 419, 665
GlaI GCGC 1 cut(s) 448
GluI GCNGC 3 cut(s) 142, 504, 507
GsaI CCCAGC 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 4 cut(s) 100, 160, 368, 389
HapII CCGG 1 cut(s) 465
HhaI GCGC 1 cut(s) 449
Hin1II CATG 2 cut(s) 80, 543
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HincII GTYRAC 1 cut(s) 774
HindII GTYRAC 1 cut(s) 774
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 2 cut(s) 219, 595
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 532, 697, 774
Hpy188I TCNGA 1 cut(s) 572
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 3 cut(s) 532, 697, 774
HpyAV CCTTC 3 cut(s) 111, 171, 563
HpyCH4III ACNGT 2 cut(s) 328, 380
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 6 cut(s) 4, 72, 108, 176, 324, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 470
HpyF3I CTNAG 2 cut(s) 591, 777
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 2 cut(s) 80, 543
HspAI GCGC 1 cut(s) 447
Ksp22I TGATCA 2 cut(s) 711, 741
Kzo9I GATC 3 cut(s) 210, 711, 741
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 2 cut(s) 153, 515
LweI GCATC 1 cut(s) 573
MaeI CTAG 2 cut(s) 419, 665
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 212, 713, 743
MboI GATC 3 cut(s) 210, 711, 741
MboII GAAGA 4 cut(s) 29, 147, 269, 337
MhlI GDGCHC 2 cut(s) 26, 370
MluCI AATT 5 cut(s) 12, 43, 109, 573, 715
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 653
MnlI CCTC 5 cut(s) 37, 285, 357, 379, 757
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 2 cut(s) 374, 602
MspA1I CMGCKG 2 cut(s) 506, 586
MspI CCGG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 30, 470
NdeI CATATG 1 cut(s) 518
NdeII GATC 3 cut(s) 210, 711, 741
NlaIII CATG 2 cut(s) 80, 543
NlaIV GGNNCC 7 cut(s) 25, 151, 204, 297, 368, 369, 469
NspI RCATGY 1 cut(s) 80
PceI AGGCCT 1 cut(s) 100
PciI ACATGT 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 1 cut(s) 595
PkrI GCNGC 3 cut(s) 143, 505, 508
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 203
PscI ACATGT 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 7 cut(s) 25, 151, 204, 297, 368, 369, 469
PspOMI GGGCCC 1 cut(s) 366
PspPI GGNCC 4 cut(s) 203, 272, 366, 367
PspPPI RGGWCCY 1 cut(s) 203
SalI GTCGAC 1 cut(s) 772
SaqAI TTAA 2 cut(s) 374, 602
SatI GCNGC 3 cut(s) 142, 504, 507
Sau3AI GATC 3 cut(s) 210, 711, 741
Sau96I GGNCC 4 cut(s) 203, 272, 366, 367
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 2 cut(s) 26, 370
SetI ASST 7 cut(s) 88, 193, 240, 490, 495, 621, 727
SfaNI GCATC 1 cut(s) 573
SinI GGWCC 2 cut(s) 203, 272
SpeI ACTAGT 1 cut(s) 664
Sse9I AATT 5 cut(s) 12, 43, 109, 573, 715
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 4 cut(s) 153, 471, 506, 584
SspI AATATT 3 cut(s) 268, 481, 651
SspMI CTAG 2 cut(s) 419, 665
StuI AGGCCT 1 cut(s) 100
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 328, 380
TaiI ACGT 1 cut(s) 727
TaqI TCGA 2 cut(s) 213, 773
TasI AATT 5 cut(s) 12, 43, 109, 573, 715
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 2 cut(s) 374, 602
Tru9I TTAA 2 cut(s) 374, 602
TscAI CASTG 2 cut(s) 331, 751
TseI GCWGC 2 cut(s) 141, 503
TspDTI ATGAA 2 cut(s) 505, 620
TspGWI ACGGA 2 cut(s) 517, 776
TspRI CASTG 2 cut(s) 331, 751
VpaK11BI GGWCC 2 cut(s) 203, 272
VspI ATTAAT 1 cut(s) 602
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 2 cut(s) 419, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.