Rh3DG309300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014512
Physical Location & Seq
Forward (+)
33154826 .. 33156152
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG309300.1

Sequence Viewer

Length: 780 bp
ATGCGAGCCCTCATTGGCACTGCTCCAGGCTCTATCTTTCTTCACAATTTCCCTAACAATGCCCAGTGCAAACAAGCTTTACTTACTAGGCGTAGGCCCTCCTGTTGCATTAGAAAGCAAAGCACACCAACAACCAGAAGCAGCAGCAGCAGCCTCAAAACCACCTGGCCATCCCTCTCATTTTCACTTTTCGGTTCCGGTTTCGTCCTCGGTCCTCTGATTGATGGAATCCATTCAAGGGTAGAACTTGTGGTTTACCAAAATGGCTCAATCAATATTGGTCCTCTTCACACAAACGTCTGGGTTCCCGTCTTACTTGGTCTGTTCTACTGCACTGTCGGGTTGTTTCAACTCTTCTTGGATGAAAGGGCCTCCTTGGAGATTCAAGAGGGCAACCAACAGAAAATGCTTGCTTCTTTATTAGCACTCGTGCTATTTATAGAGTTGAGCGCCGAGATGTATAAAGCAGGCGTCGCAGACAATATAGAAGCATACATACTATTTGCAGCGGCTGAGTTTATATGGTTTTCTGTCAATCGGACATGGTTTGGCTTCCTTCTCGCAAGCATAGTTGGTCTGGCCTGCCCGCTGGCCGAGATACCCTTAATGAAGTTCTTCAACCTCTGGTATTATCCACAAGCGAATATCGAAATCTTTGGCCAGGGCCTGGTGACTTGGACACTCACTTGCTATTTTATTTACACGCTGTTTCTGATCAATTTTTCACGCTGGCTGAAATCAGTGATCAGTTCTACTAATACGGAGAACAAGTCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INSIG

Protein Analysis

259

Amino Acids

29.02

Weight (kDa)

8.75

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01935
fragaria_vesca FvH4_1g26780
malus_domestica MD09G1286700.v1.1
prunus_persica Prupe.3G006900_v2.0.a1
pyrus_communis pycom09g19380
rosa_chinensis RchiOBHm_Chr3g0487001
rosa_laevigata RLG00000023040
rosa_multiflora Rmu_sc0005856.1_g000001 Rmu_sc0009825.1_g000004 Rmu_sc0027023.1_g000002
rosa_roxburghii Rroxscaffold_6G00395260
rosa_rugosa Rorug03G0229100
rosa_samantha Rh3AG278600 Rh3BG314400 Rh3CG312800 Rh3DG309300
rosa_wichuraiana Rw0G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 667
AciI CCGC 2 cut(s) 509, 587
AcoI YGGCCR 3 cut(s) 167, 591, 658
AcyI GRCGYC 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 238, 667
AgsI TTSAA 4 cut(s) 237, 350, 386, 619
AjnI CCWGG 4 cut(s) 25, 164, 660, 666
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AlwNI CAGNNNCTG 2 cut(s) 512, 667
AoxI GGCC 7 cut(s) 95, 167, 369, 579, 591, 658, 664
ApeKI GCWGC 5 cut(s) 141, 144, 147, 150, 506
Asp700I GAANNNNTTC 2 cut(s) 232, 614
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 5 cut(s) 96, 212, 281, 369, 664
AsuHPI GGTGA 1 cut(s) 682
AvaII GGWCC 2 cut(s) 212, 281
BalI TGGCCA 2 cut(s) 169, 660
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BauI CACGAG 1 cut(s) 428
BbvI GCAGC 5 cut(s) 153, 156, 159, 162, 518
BccI CCATC 2 cut(s) 178, 218
BciT130I CCWGG 4 cut(s) 27, 166, 662, 668
BclI TGATCA 2 cut(s) 714, 744
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 6 cut(s) 142, 145, 148, 151, 507, 510
BlsI GCNGC 6 cut(s) 143, 146, 149, 152, 508, 511
Bme1390I CCNGG 4 cut(s) 27, 166, 662, 668
Bme18I GGWCC 2 cut(s) 212, 281
BmgT120I GGNCC 5 cut(s) 96, 212, 281, 369, 664
BmiI GGNNCC 2 cut(s) 196, 306
BmrFI CCNGG 4 cut(s) 27, 166, 662, 668
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 208, 375, 661
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 1 cut(s) 755
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 667
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 4 cut(s) 27, 166, 662, 668
BseDI CCNNGG 3 cut(s) 208, 375, 661
BseGI GGATG 2 cut(s) 170, 367
BseLI CCNNNNNNNGG 2 cut(s) 238, 667
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 5 cut(s) 153, 156, 159, 162, 518
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 7 cut(s) 97, 169, 371, 581, 593, 660, 666
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 238, 667
BsnI GGCC 7 cut(s) 97, 169, 371, 581, 593, 660, 666
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 714, 744
BspACI CCGC 2 cut(s) 509, 587
BspANI GGCC 7 cut(s) 97, 169, 371, 581, 593, 660, 666
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 196, 306
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 208, 375, 661
BssMI GATC 2 cut(s) 714, 744
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 428
Bst2UI CCWGG 4 cut(s) 27, 166, 662, 668
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 291, 359
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 8 cut(s) 6, 411, 469, 565, 583, 587, 591, 731
BstDEI CTNAG 2 cut(s) 513, 777
BstF5I GGATG 2 cut(s) 170, 367
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 2 cut(s) 717, 747
BstMBI GATC 2 cut(s) 714, 744
BstMWI GCNNNNNNNGC 3 cut(s) 147, 150, 473
BstNI CCWGG 4 cut(s) 27, 166, 662, 668
BstSCI CCNGG 4 cut(s) 25, 164, 660, 666
BstV1I GCAGC 5 cut(s) 153, 156, 159, 162, 518
BsuRI GGCC 7 cut(s) 97, 169, 371, 581, 593, 660, 666
BtsCI GGATG 2 cut(s) 170, 367
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 4 cut(s) 18, 71, 333, 747
Cac8I GCNNGC 8 cut(s) 6, 411, 469, 565, 583, 587, 591, 731
CaiI CAGNNNCTG 2 cut(s) 512, 667
CfoI GCGC 1 cut(s) 452
Cfr13I GGNCC 5 cut(s) 96, 212, 281, 369, 664
CseI GACGC 1 cut(s) 460
CviAII CATG 1 cut(s) 543
DdeI CTNAG 2 cut(s) 513, 777
DpnI GATC 2 cut(s) 716, 746
DpnII GATC 2 cut(s) 714, 744
EaeI YGGCCR 3 cut(s) 167, 591, 658
Eam1104I CTCTTC 2 cut(s) 291, 359
EarI CTCTTC 2 cut(s) 291, 359
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 212, 281
EcoO109I RGGNCCY 3 cut(s) 96, 369, 664
EcoRII CCWGG 4 cut(s) 25, 164, 660, 666
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 546
FaiI YATR 9 cut(s) 440, 462, 485, 493, 497, 521, 523, 544, 569
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 1 cut(s) 542
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 2 cut(s) 714, 744
Fnu4HI GCNGC 6 cut(s) 142, 145, 148, 151, 507, 510
FokI GGATG 2 cut(s) 157, 374
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 6 cut(s) 142, 145, 148, 151, 507, 510
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 451
GluI GCNGC 6 cut(s) 142, 145, 148, 151, 507, 510
GsuI CTGGAG 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 7 cut(s) 97, 169, 371, 581, 593, 660, 666
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 460
HhaI GCGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 1 cut(s) 546
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 2 cut(s) 228, 382
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 682
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 219, 540, 714
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 4 cut(s) 69, 108, 333, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 150, 473
HpyF3I CTNAG 2 cut(s) 513, 777
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 1 cut(s) 546
HspAI GCGC 1 cut(s) 450
Ksp22I TGATCA 2 cut(s) 714, 744
Kzo9I GATC 2 cut(s) 714, 744
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 5 cut(s) 153, 156, 159, 162, 518
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 670
MalI GATC 2 cut(s) 716, 746
MboI GATC 2 cut(s) 714, 744
MboII GAAGA 4 cut(s) 32, 278, 346, 607
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 2 cut(s) 169, 660
MluCI AATT 2 cut(s) 46, 718
MluNI TGGCCA 2 cut(s) 169, 660
Mox20I TGGCCA 2 cut(s) 169, 660
MroXI GAANNNNTTC 2 cut(s) 232, 614
MscI TGGCCA 2 cut(s) 169, 660
MseI TTAA 1 cut(s) 605
Msp20I TGGCCA 2 cut(s) 169, 660
MspA1I CMGCKG 2 cut(s) 509, 589
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 4 cut(s) 27, 166, 662, 668
MvaI CCWGG 4 cut(s) 27, 166, 662, 668
MwoI GCNNNNNNNGC 3 cut(s) 147, 150, 473
NdeII GATC 2 cut(s) 714, 744
NlaIII CATG 1 cut(s) 546
NlaIV GGNNCC 2 cut(s) 196, 306
NmeAIII GCCGAG 2 cut(s) 478, 619
NmuCI GTSAC 1 cut(s) 670
PdmI GAANNNNTTC 2 cut(s) 232, 614
PfeI GAWTC 2 cut(s) 228, 382
PflMI CCANNNNNTGG 1 cut(s) 667
PkrI GCNGC 6 cut(s) 143, 146, 149, 152, 508, 511
Psp6I CCWGG 4 cut(s) 25, 164, 660, 666
PspGI CCWGG 4 cut(s) 25, 164, 660, 666
PspN4I GGNNCC 2 cut(s) 196, 306
PspPI GGNCC 5 cut(s) 96, 212, 281, 369, 664
PstNI CAGNNNCTG 2 cut(s) 512, 667
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 6 cut(s) 142, 145, 148, 151, 507, 510
Sau3AI GATC 2 cut(s) 714, 744
Sau96I GGNCC 5 cut(s) 96, 212, 281, 369, 664
ScrFI CCNGG 4 cut(s) 27, 166, 662, 668
SduI GDGCHC 1 cut(s) 10
SetI ASST 4 cut(s) 79, 167, 300, 624
SinI GGWCC 2 cut(s) 212, 281
Sse9I AATT 2 cut(s) 46, 718
SsiI CCGC 2 cut(s) 509, 587
SspI AATATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 25, 164, 660, 666
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 648
TaqII GACCGA 1 cut(s) 200
TasI AATT 2 cut(s) 46, 718
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 2 cut(s) 228, 382
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 4 cut(s) 25, 71, 340, 747
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 5 cut(s) 141, 144, 147, 150, 506
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 2 cut(s) 378, 623
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 4 cut(s) 25, 71, 340, 747
Van91I CCANNNNNTGG 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 212, 281
XmnI GAANNNNTTC 2 cut(s) 232, 614
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.