FvH4_1g26780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014512
Physical Location & Seq
Forward (+)
18641758 .. 18643272
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26780.t1

Sequence Viewer

Length: 768 bp
ATGCGAGCCCTCATTGGCATTGCTCCATTCTCTCTTCACAATTTTCCTAACAATGCCCAGAGCAAGCAAGGTTTGCTCATTAGGCGTAGGCCTTCCTGCTGTATCAGAAAGCAAAGCACACCATCAACCAGAAGCAGCAGCAGCCTCAAAACCACTTGGCCGTCCCTCTCATTTTCACTTTTCGGTTCCGGTTTTGTCCTTGGTCCTCTAATTGATGGAATCCATTCAAGGGTAGAACTTGTGGTGTATCAGAATGGCTCAACCAATATTGGTCCTCTTCACACTAACGTTTGGGTTCCCGTCTTACTTGGATTGTTCTACTGCACTGTCGGTTTGCTTCAACTCTTCTTGGATGAAAGGGCCTCCAAACAGATTCCAGAGGGAAACCAACAGAAAATGCTTGCCTCTTTGTTCGCACTGGTGCTATTTATAGAGTTGAGCGCCGAGATGTACAAAGCAGGAGTTGCAGACAATATTGAAGCATACGTGCTATTTGTAGCGGCTGAGTTTATATGGTTTTCTGTGAACCGGACATGGTTCGGCTTCCTCCTTGCAAGCATAGTTGGTCTGGCCTGCCCACTGGCTGAGACACCCTTAATGAAGTTCTTCCACCTTTGGTATTATCCACAAGCAAATGTTGAAATCTTTGGCCAGGGCCTGGTGACTTGGACGCTCACTTGCTATTTTGTGTACACGCTGTTTCTGATCAATTATTCACGCTGGCTGAAATCAGTGATCACTTCTACTAATACAACAGAGGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INSIG

Protein Analysis

256

Amino Acids

28.67

Weight (kDa)

8.98

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INSIG PF07281 58 - 201 7e-06 Insulin-induced protein (INSIG)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01935
fragaria_vesca FvH4_1g26780
malus_domestica MD09G1286700.v1.1
prunus_persica Prupe.3G006900_v2.0.a1
pyrus_communis pycom09g19380
rosa_chinensis RchiOBHm_Chr3g0487001
rosa_laevigata RLG00000023040
rosa_multiflora Rmu_sc0005856.1_g000001 Rmu_sc0009825.1_g000004 Rmu_sc0027023.1_g000002
rosa_roxburghii Rroxscaffold_6G00395260
rosa_rugosa Rorug03G0229100
rosa_samantha Rh3AG278600 Rh3BG314400 Rh3CG312800 Rh3DG309300
rosa_wichuraiana Rw0G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 658
AciI CCGC 1 cut(s) 500
AclI AACGTT 1 cut(s) 288
AcoI YGGCCR 2 cut(s) 158, 649
AfaI GTAC 2 cut(s) 452, 692
AfiI CCNNNNNNNGG 2 cut(s) 229, 658
AgsI TTSAA 4 cut(s) 228, 341, 479, 641
AjnI CCWGG 2 cut(s) 651, 657
Alw26I GTCTC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 658
AoxI GGCC 6 cut(s) 89, 158, 360, 570, 649, 655
ApeKI GCWGC 3 cut(s) 135, 138, 141
Asp700I GAANNNNTTC 2 cut(s) 223, 605
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 4 cut(s) 203, 272, 360, 655
AsuHPI GGTGA 1 cut(s) 673
AvaII GGWCC 2 cut(s) 203, 272
BalI TGGCCA 1 cut(s) 651
BanII GRGCYC 1 cut(s) 10
BbvI GCAGC 3 cut(s) 147, 150, 153
BccI CCATC 2 cut(s) 130, 209
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 653, 659
BclI TGATCA 2 cut(s) 705, 735
BcoDI GTCTC 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 4 cut(s) 136, 139, 142, 501
BlsI GCNGC 4 cut(s) 137, 140, 143, 502
Bme1390I CCNGG 2 cut(s) 653, 659
Bme18I GGWCC 2 cut(s) 203, 272
BmgT120I GGNCC 4 cut(s) 203, 272, 360, 655
BmiI GGNNCC 2 cut(s) 187, 297
BmrFI CCNGG 2 cut(s) 653, 659
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 199, 652
BsaWI WCCGGW 2 cut(s) 188, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 658
Bse1I ACTGG 2 cut(s) 423, 585
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 653, 659
BseDI CCNNGG 2 cut(s) 199, 652
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 229, 658
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 495, 576
BseNI ACTGG 2 cut(s) 423, 585
BseXI GCAGC 3 cut(s) 147, 150, 153
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 6 cut(s) 91, 160, 362, 572, 651, 657
BsiSI CCGG 2 cut(s) 189, 529
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 229, 658
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 6 cut(s) 91, 160, 362, 572, 651, 657
Bsp1286I GDGCHC 1 cut(s) 10
Bsp1407I TGTACA 2 cut(s) 450, 690
Bsp143I GATC 2 cut(s) 705, 735
BspACI CCGC 1 cut(s) 500
BspANI GGCC 6 cut(s) 91, 160, 362, 572, 651, 657
BspCNI CTCAG 2 cut(s) 496, 577
BspLI GGNNCC 2 cut(s) 187, 297
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 2 cut(s) 450, 690
BsrI ACTGG 2 cut(s) 423, 585
BssECI CCNNGG 2 cut(s) 199, 652
BssMI GATC 2 cut(s) 705, 735
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 653, 659
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 3 cut(s) 39, 282, 350
BstAPI GCANNNNNTGC 2 cut(s) 73, 464
BstAUI TGTACA 2 cut(s) 450, 690
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 6 cut(s) 6, 65, 402, 556, 574, 722
BstDEI CTNAG 2 cut(s) 504, 585
BstF5I GGATG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 2 cut(s) 708, 738
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 2 cut(s) 705, 735
BstMWI GCNNNNNNNGC 4 cut(s) 73, 82, 141, 464
BstNI CCWGG 2 cut(s) 653, 659
BstSCI CCNGG 2 cut(s) 651, 657
BstV1I GCAGC 3 cut(s) 147, 150, 153
BsuRI GGCC 6 cut(s) 91, 160, 362, 572, 651, 657
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 4 cut(s) 324, 416, 578, 738
Cac8I GCNNGC 6 cut(s) 6, 65, 402, 556, 574, 722
CaiI CAGNNNCTG 1 cut(s) 658
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 4 cut(s) 203, 272, 360, 655
CseI GACGC 1 cut(s) 679
Csp6I GTAC 2 cut(s) 451, 691
CviAII CATG 1 cut(s) 534
CviQI GTAC 2 cut(s) 451, 691
DdeI CTNAG 2 cut(s) 504, 585
DpnI GATC 2 cut(s) 707, 737
DpnII GATC 2 cut(s) 705, 735
EaeI YGGCCR 2 cut(s) 158, 649
Eam1104I CTCTTC 3 cut(s) 39, 282, 350
EarI CTCTTC 3 cut(s) 39, 282, 350
Eco130I CCWWGG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 203, 272
EcoO109I RGGNCCY 2 cut(s) 360, 655
EcoRII CCWGG 2 cut(s) 651, 657
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 537
FaiI YATR 6 cut(s) 431, 484, 512, 514, 535, 560
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 533
FbaI TGATCA 2 cut(s) 705, 735
Fnu4HI GCNGC 4 cut(s) 136, 139, 142, 501
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 4 cut(s) 136, 139, 142, 501
GlaI GCGC 1 cut(s) 442
GluI GCNGC 4 cut(s) 136, 139, 142, 501
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 6 cut(s) 91, 160, 362, 572, 651, 657
HapII CCGG 2 cut(s) 189, 529
HgaI GACGC 1 cut(s) 679
HhaI GCGC 1 cut(s) 443
Hin1II CATG 1 cut(s) 537
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 2 cut(s) 219, 373
HpaII CCGG 2 cut(s) 189, 529
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 3 cut(s) 526, 691, 693
Hpy188I TCNGA 3 cut(s) 107, 252, 705
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 3 cut(s) 526, 691, 693
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 288, 486
HpyCH4V TGCA 3 cut(s) 324, 467, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 82, 141, 464
HpyF3I CTNAG 2 cut(s) 504, 585
HpySE526I ACGT 2 cut(s) 288, 486
Hsp92II CATG 1 cut(s) 537
HspAI GCGC 1 cut(s) 441
Ksp22I TGATCA 2 cut(s) 705, 735
Kzo9I GATC 2 cut(s) 705, 735
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 147, 150, 153
MaeII ACGT 2 cut(s) 288, 486
MaeIII GTNAC 1 cut(s) 661
MalI GATC 2 cut(s) 707, 737
MboI GATC 2 cut(s) 705, 735
MboII GAAGA 4 cut(s) 26, 269, 337, 598
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 3 cut(s) 40, 210, 709
MluNI TGGCCA 1 cut(s) 651
Mox20I TGGCCA 1 cut(s) 651
MroXI GAANNNNTTC 2 cut(s) 223, 605
MscI TGGCCA 1 cut(s) 651
MseI TTAA 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 651
MspI CCGG 2 cut(s) 189, 529
MspR9I CCNGG 2 cut(s) 653, 659
MvaI CCWGG 2 cut(s) 653, 659
MwoI GCNNNNNNNGC 4 cut(s) 73, 82, 141, 464
NdeII GATC 2 cut(s) 705, 735
NlaIII CATG 1 cut(s) 537
NlaIV GGNNCC 2 cut(s) 187, 297
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 661
PceI AGGCCT 1 cut(s) 91
PdmI GAANNNNTTC 2 cut(s) 223, 605
PfeI GAWTC 2 cut(s) 219, 373
PflMI CCANNNNNTGG 1 cut(s) 658
PkrI GCNGC 4 cut(s) 137, 140, 143, 502
Ppu21I YACGTR 1 cut(s) 487
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 651, 657
PspGI CCWGG 2 cut(s) 651, 657
PspN4I GGNNCC 2 cut(s) 187, 297
PspPI GGNCC 4 cut(s) 203, 272, 360, 655
PstNI CAGNNNCTG 1 cut(s) 658
RsaI GTAC 2 cut(s) 452, 692
RsaNI GTAC 2 cut(s) 451, 691
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 4 cut(s) 136, 139, 142, 501
Sau3AI GATC 2 cut(s) 705, 735
Sau96I GGNCC 4 cut(s) 203, 272, 360, 655
ScrFI CCNGG 2 cut(s) 653, 659
SduI GDGCHC 1 cut(s) 10
SetI ASST 4 cut(s) 73, 291, 489, 615
SinI GGWCC 2 cut(s) 203, 272
Sse9I AATT 3 cut(s) 40, 210, 709
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 1 cut(s) 500
SspI AATATT 2 cut(s) 268, 475
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 651, 657
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 291, 489
TasI AATT 3 cut(s) 40, 210, 709
TatI WGTACW 2 cut(s) 450, 690
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 2 cut(s) 219, 373
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 4 cut(s) 331, 423, 585, 738
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 3 cut(s) 135, 138, 141
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 2 cut(s) 369, 614
TspRI CASTG 4 cut(s) 331, 423, 585, 738
Van91I CCANNNNNTGG 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 203, 272
XmnI GAANNNNTTC 2 cut(s) 223, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.