Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Forward (+)

1092522 .. 1094600

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02485.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACGAAGAAGCAGAGAATTTGAGAGCAGCTTTTGGCGATTCATCGGATGATGAAGATATCGCAGATCGGCCGGGAAAAGAAACCATAGGGATCGGAGATTCGGCGGTATGGGAGAGAGTGGAGGAGATAAATGGTTTATGGCTCTATAGAAACTTTCTCTCTATTGCTCATCAGTCTCATTTACTCTCCGCCATTCTAAACGAAGGTTGGTTCGTTGAAGAATCTATTAACCAGGCGATGAGATTTGGTGATCTCCCTTCATGGGCAACAGAACTATCTGATCTCATACGCGAGACACTGGAATCTGTTGATCTTCCGGTCTTGTCTGCTGATTTACTCTGGAGAGAACCTCTGTTCGACCAGCTCATTGTCAATTTGTACCAACCAGGTGAGGGAATTTGTGCACATGTTGATCTGCTGCGTTTTGAAGATGGGATTGCCATCGTCTCTCTGGAGTCACCTTGCGTGATGCGGTTCAGTCCCGCAGAAAAGAACGAATATGAAGCTGTGGATGTTTTGCTGAACCCGGGATCTCTCATTCTCATGTCTGGAGAAGCTCGGTATCGATGGAAACACGAGATTAATCGAAAGCAGAATGGGTTTCAGCTATGGGAAGGAGAAGAAATTGATCAGAAACGAAGAATCTCCATTACCTTGAGAAAGCTATGTCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

226

Amino Acids

25.79

Weight (kDa)

4.47

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	105 - 221	5.8e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AciI	CCGC	4 cut(s)	107, 192, 475, 486
AclWI	GGATC	2 cut(s)	101, 541
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	19, 399
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	265, 395
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	221, 431
AjnI	CCWGG	2 cut(s)	234, 388
AluBI	AGCT	6 cut(s)	32, 367, 509, 560, 610, 667
AluI	AGCT	6 cut(s)	32, 367, 509, 560, 610, 667
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	3 cut(s)	183, 290, 454
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	101, 541
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	29, 421
ApoI	RAATTY	2 cut(s)	19, 399
AseI	ATTAAT	1 cut(s)	585
AsuC2I	CCSGG	3 cut(s)	75, 530, 531
AsuHPI	GGTGA	3 cut(s)	263, 404, 453
AvaI	CYCGRG	1 cut(s)	529
BaeGI	GKGCMC	1 cut(s)	409
BauI	CACGAG	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	41, 408
BccI	CCATC	3 cut(s)	428, 452, 564
BciT130I	CCWGG	2 cut(s)	236, 390
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	3 cut(s)	75, 530, 531
BcoDI	GTCTC	3 cut(s)	183, 290, 454
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	2 cut(s)	30, 422
BlsI	GCNGC	2 cut(s)	31, 423
Bme1390I	CCNGG	5 cut(s)	75, 236, 390, 530, 531
BmeT110I	CYCGRG	1 cut(s)	529
BmrFI	CCNGG	5 cut(s)	75, 236, 390, 530, 531
BmsI	GCATC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	3 cut(s)	364, 476, 573
BpuEI	CTTGAG	1 cut(s)	679
BpuMI	CCSGG	3 cut(s)	75, 530, 531
Bsa29I	ATCGAT	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	529
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 395
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	236, 390
BseCI	ATCGAT	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	55, 520
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	265, 395
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	409
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	41, 408
Bsh1236I	CGCG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	3 cut(s)	74, 320, 530
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	265, 395
BsmAI	GTCTC	3 cut(s)	183, 290, 454
BsmBI	CGTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
BspACI	CCGC	4 cut(s)	107, 192, 475, 486
BspANI	GGCC	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	294
BspPI	GGATC	2 cut(s)	101, 541
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
BssSI	CACGAG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	236, 390
BstF5I	GGATG	2 cut(s)	55, 520
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	8 cut(s)	70, 96, 256, 286, 316, 418, 536, 634
BstMAI	GTCTC	3 cut(s)	183, 290, 454
BstMBI	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
BstMCI	CGRYCG	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	236, 390
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	5 cut(s)	73, 234, 388, 528, 529
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	41, 408
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BstZI	CGGCCG	1 cut(s)	71
Bsu15I	ATCGAT	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	55, 520
BtsIMutI	CAGTG	1 cut(s)	299
Cfr9I	CCCGGG	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	568
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	3 cut(s)	264, 410, 547
CviJI	RGCY	9 cut(s)	32, 73, 145, 367, 509, 560, 610, 667, 677
CviKI_1	RGCY	9 cut(s)	32, 73, 145, 367, 509, 560, 610, 667, 677
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	8 cut(s)	69, 95, 255, 285, 315, 417, 535, 633
DpnII	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	234, 388
EcoRV	GATATC	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	3 cut(s)	267, 413, 550
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	3 cut(s)	263, 409, 546
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	30, 422
FokI	GGATG	2 cut(s)	62, 527
Fsp4HI	GCNGC	2 cut(s)	30, 422
GluI	GCNGC	2 cut(s)	30, 422
GsuI	CTGGAG	3 cut(s)	364, 476, 573
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	74, 320, 530
Hin1II	CATG	3 cut(s)	267, 413, 550
HinfI	GANTC	6 cut(s)	41, 101, 224, 305, 458, 645
HpaII	CCGG	3 cut(s)	74, 320, 530
HphI	GGTGA	3 cut(s)	263, 404, 453
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	49, 98, 283, 636
Hpy188III	TCNNGA	3 cut(s)	343, 455, 552
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	3 cut(s)	200, 270, 611
HpyCH4V	TGCA	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	267, 413, 550
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
Lsp1109I	GCAGC	2 cut(s)	41, 408
LweI	GCATC	1 cut(s)	462
MabI	ACCWGGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	8 cut(s)	69, 95, 255, 285, 315, 417, 535, 633
MboI	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
MboII	GAAGA	7 cut(s)	20, 68, 233, 308, 443, 635, 654
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	4 cut(s)	19, 376, 399, 627
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	3 cut(s)	118, 363, 388
MseI	TTAA	2 cut(s)	231, 585
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	3 cut(s)	74, 320, 530
MspR9I	CCNGG	5 cut(s)	75, 236, 390, 530, 531
MvaI	CCWGG	2 cut(s)	236, 390
MvnI	CGCG	1 cut(s)	294
NciI	CCSGG	3 cut(s)	75, 530, 531
NdeII	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
NlaIII	CATG	3 cut(s)	267, 413, 550
NmuCI	GTSAC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	413
PciI	ACATGT	1 cut(s)	409
PfeI	GAWTC	5 cut(s)	41, 101, 224, 305, 645
PkrI	GCNGC	2 cut(s)	31, 423
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PscI	ACATGT	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	234, 388
PspGI	CCWGG	2 cut(s)	234, 388
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	231, 585
SatI	GCNGC	2 cut(s)	30, 422
Sau3AI	GATC	8 cut(s)	67, 93, 253, 283, 313, 415, 533, 631
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	5 cut(s)	75, 236, 390, 530, 531
SduI	GDGCHC	1 cut(s)	409
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	148
SmaI	CCCGGG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	4 cut(s)	19, 376, 399, 627
SsiI	CCGC	4 cut(s)	107, 192, 475, 486
StyD4I	CCNGG	5 cut(s)	73, 234, 388, 528, 529
TaqI	TCGA	3 cut(s)	360, 568, 589
TasI	AATT	4 cut(s)	19, 376, 399, 627
TfiI	GAWTC	5 cut(s)	41, 101, 224, 305, 645
Tru1I	TTAA	2 cut(s)	231, 585
Tru9I	TTAA	2 cut(s)	231, 585
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	2 cut(s)	29, 421
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	4 cut(s)	33, 69, 252, 519
TspMI	CCCGGG	1 cut(s)	529
TspRI	CASTG	1 cut(s)	306
VneI	GTGCAC	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	2 cut(s)	19, 399
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmaI	CCCGGG	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.