Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00118

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Forward (+)

30688 .. 34115

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCGGTCTGTGTCGGGGTTGGATCGAATTCTGGATTGGGCAGATAAGCTTTCGGATTCTATTCACAAGGTTGTGCTTTCATGTGATAGTGATTCTCATCCTATCGAGTTGGGAAGTGCTCGTGGTGGGAAGCTGAATGGTAGTCCGTTTCCGTTGGAAATTTTATCCAGAGTGCCACTCTTTGATCAACTTATCTTAAACTATTACCAACCAGGTGAGGGGATCTGCGCCCACGTTGACCTATTGCGCTTTGAAGATGGAATTGCTATCCTCTCCCTAGAGTCATCATGTGTGATGCATTTTAGTCTAGTTGAAGGAACAAGTGGGGGCTTTCTAGAGGATCGGGGAAAGGATCCAGTGACAACCAAGATTCCTGTTTATCTTACACCAGGATCCCTGATTCTAATGTCAGGAGAAGCACGCTACCAATGGAAGCACGAGATCAACTGCAAACATGGATTTCAGAAAATCTCCATTACTCTGAGGAAGCTTTGCCAGGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

168

Amino Acids

18.61

Weight (kDa)

5.85

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	61 - 151	1.8e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	7 cut(s)	30, 230, 347, 348, 360, 387, 400
AcsI	RAATTY	2 cut(s)	27, 159
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	254, 314
AjnI	CCWGG	3 cut(s)	211, 388, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	3 cut(s)	49, 133, 490
AluI	AGCT	3 cut(s)	49, 133, 490
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	7 cut(s)	30, 230, 347, 348, 360, 387, 400
ApoI	RAATTY	2 cut(s)	27, 159
AspLEI	GCGC	2 cut(s)	230, 249
AsuHPI	GGTGA	1 cut(s)	227
BamHI	GGATCC	2 cut(s)	352, 392
BauI	CACGAG	2 cut(s)	120, 437
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	3 cut(s)	213, 390, 497
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	3 cut(s)	278, 308, 335
Bme1390I	CCNGG	3 cut(s)	213, 390, 497
BmiI	GGNNCC	2 cut(s)	354, 394
BmrFI	CCNGG	3 cut(s)	213, 390, 497
BmsI	GCATC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BsaBI	GATNNNNATC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	213, 390, 497
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	354, 394
BspPI	GGATC	7 cut(s)	30, 230, 347, 348, 360, 387, 400
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
BssSI	CACGAG	2 cut(s)	120, 437
Bst2BI	CACGAG	2 cut(s)	120, 437
Bst2UI	CCWGG	3 cut(s)	213, 390, 497
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	230, 249
BstKTI	GATC	7 cut(s)	25, 187, 225, 343, 355, 395, 444
BstMBI	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
BstNI	CCWGG	3 cut(s)	213, 390, 497
BstSCI	CCNGG	3 cut(s)	211, 388, 495
BstX2I	RGATCY	3 cut(s)	222, 352, 392
BstYI	RGATCY	3 cut(s)	222, 352, 392
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	2 cut(s)	230, 249
CsiI	ACCWGGT	1 cut(s)	211
CviAII	CATG	3 cut(s)	81, 288, 455
CviJI	RGCY	4 cut(s)	49, 133, 330, 490
CviKI_1	RGCY	4 cut(s)	49, 133, 330, 490
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	7 cut(s)	24, 186, 224, 342, 354, 394, 443
DpnII	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	211, 388, 495
EcoT22I	ATGCAT	1 cut(s)	300
FaeI	CATG	3 cut(s)	84, 291, 458
FaiI	YATR	3 cut(s)	82, 289, 456
FatI	CATG	3 cut(s)	80, 287, 454
FbaI	TGATCA	1 cut(s)	184
FokI	GGATG	1 cut(s)	84
FspBI	CTAG	3 cut(s)	278, 308, 335
GlaI	GCGC	2 cut(s)	229, 248
HhaI	GCGC	2 cut(s)	230, 249
Hin1II	CATG	3 cut(s)	84, 291, 458
Hin6I	GCGC	2 cut(s)	228, 247
HinP1I	GCGC	2 cut(s)	228, 247
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	2 cut(s)	47, 488
HinfI	GANTC	5 cut(s)	56, 92, 281, 370, 400
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	55, 465, 483
Hpy188III	TCNNGA	4 cut(s)	32, 168, 335, 411
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	298, 450
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	84, 291, 458
HspAI	GCGC	2 cut(s)	228, 247
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
LweI	GCATC	1 cut(s)	285
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	3 cut(s)	278, 308, 335
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	7 cut(s)	24, 186, 224, 342, 354, 394, 443
MboI	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	3 cut(s)	222, 352, 392
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	3 cut(s)	27, 159, 261
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	211, 281, 331, 477
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	213, 390, 497
MvaI	CCWGG	3 cut(s)	213, 390, 497
NdeII	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
NlaIII	CATG	3 cut(s)	84, 291, 458
NlaIV	GGNNCC	2 cut(s)	354, 394
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	300
PfeI	GAWTC	4 cut(s)	56, 92, 370, 400
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	211, 388, 495
PspGI	CCWGG	3 cut(s)	211, 388, 495
PspN4I	GGNNCC	2 cut(s)	354, 394
PsuI	RGATCY	3 cut(s)	222, 352, 392
SaqAI	TTAA	1 cut(s)	197
Sau3AI	GATC	7 cut(s)	22, 184, 222, 340, 352, 392, 441
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	213, 390, 497
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	8 cut(s)	51, 72, 135, 217, 237, 243, 492, 501
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	27, 159, 261
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	278, 308, 335
StyD4I	CCNGG	3 cut(s)	211, 388, 495
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	25, 105
TasI	AATT	3 cut(s)	27, 159, 261
TfiI	GAWTC	4 cut(s)	56, 92, 370, 400
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	135, 141
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	27, 159
XbaI	TCTAGA	1 cut(s)	334
XspI	CTAG	3 cut(s)	278, 308, 335
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.