Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Reverse (-)

20639414 .. 20641511

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGAGATTCTCAGGCAAGTGTTCGGCGATTCATCGGATAGTGAAGACTGGGAATCGGAGCCCGACCCGAATCAGAGATGGGTACAAACAGAAGGAATCAAAGGGCTGTGGATGTGCAGAGACTTCCTCTCTCCTCAGAACCAGTCTGCCTTGCTCTCCACAATCCAAAACGAAGGATGGTTCACTGAGGCCTCTCACAATCAGGCTATGAGGTTCGGAGACCTGCCGGGTTGGGCAGCTGAGCTGTCGGATTCTATTAAAGAGGTTGTACTTTCTTGTGGTAGTGATTCTCATCTTATTGATTTGGGAAGTAGTGGCGGGAAGGAGAATGTCAGTCCGTTTTCGCCGGAGCTTTTAGCCAGAGAGCCACTCTTTGATCAACTGATCTTAAACTCGTACCAACCAGGTGAGGGTATCTGCGCTCATGTGGACCTAATGTGCTTCGAAGATGGAATTGCTATCCTCTCGCTAGAGTCATCATGTGTGATGCATTTTAGTCCAGTTGAAGGAACAAGTGGGGACTTTCTTGTTGATGGGGAAAAGGATCCTCGGACGACCAAGATTCCTGTTTATCTTACACCAGGATCCCTGATTCTAATGTCAGGAGAAGCACGCTACCAATGGAAGCACGAGATCAACCGCAAACCTGGATTTCAGAAGTGGCAAGGAGAGGAGCTAAATCAGAAGAAGAGAATCTCCATTACTCTGAGGAAGCTTTGCCAGGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

245

Amino Acids

27.37

Weight (kDa)

4.66

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	38 - 238	9.8e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AciI	CCGC	2 cut(s)	321, 643
AclWI	GGATC	4 cut(s)	542, 555, 582, 595
AfaI	GTAC	3 cut(s)	87, 273, 401
AfiI	CCNNNNNNNGG	2 cut(s)	413, 509
AgsI	TTSAA	1 cut(s)	509
AjnI	CCWGG	4 cut(s)	406, 583, 649, 723
AluBI	AGCT	5 cut(s)	242, 247, 355, 679, 718
AluI	AGCT	5 cut(s)	242, 247, 355, 679, 718
Alw26I	GTCTC	2 cut(s)	117, 216
AlwI	GGATC	4 cut(s)	542, 555, 582, 595
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	433
BamHI	GGATCC	2 cut(s)	547, 587
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	4 cut(s)	75, 174, 446, 530
BciT130I	CCWGG	4 cut(s)	408, 585, 651, 725
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	117, 216
BfaI	CTAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	5 cut(s)	231, 408, 585, 651, 725
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	63, 549, 589
BmrFI	CCNGG	5 cut(s)	231, 408, 585, 651, 725
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	54
BplI	GAGNNNNNCTC	4 cut(s)	114, 146, 357, 389
Bpu1102I	GCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 509
Bse1I	ACTGG	3 cut(s)	56, 145, 503
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	4 cut(s)	408, 585, 651, 725
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	120, 185
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	413, 509
BseMII	CTCAG	5 cut(s)	28, 152, 180, 234, 701
BseNI	ACTGG	3 cut(s)	56, 145, 503
BseRI	GAGGAG	3 cut(s)	20, 126, 689
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	230, 350
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	413, 509
BsmAI	GTCTC	2 cut(s)	117, 216
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	5 cut(s)	379, 387, 547, 587, 636
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	2 cut(s)	321, 643
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	5 cut(s)	27, 151, 181, 235, 702
BspLI	GGNNCC	3 cut(s)	63, 549, 589
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	4 cut(s)	542, 555, 582, 595
BspT104I	TTCGAA	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	56, 145, 503
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	5 cut(s)	379, 387, 547, 587, 636
BssSI	CACGAG	1 cut(s)	632
Bst2BI	CACGAG	1 cut(s)	632
Bst2UI	CCWGG	4 cut(s)	408, 585, 651, 725
Bst6I	CTCTTC	1 cut(s)	686
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	5 cut(s)	14, 138, 189, 243, 710
BstF5I	GGATG	2 cut(s)	120, 185
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	5 cut(s)	382, 390, 550, 590, 639
BstMAI	GTCTC	2 cut(s)	117, 216
BstMBI	GATC	5 cut(s)	379, 387, 547, 587, 636
BstNI	CCWGG	4 cut(s)	408, 585, 651, 725
BstSCI	CCNGG	5 cut(s)	229, 406, 583, 649, 723
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	547, 587
BstYI	RGATCY	2 cut(s)	547, 587
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	120, 185
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	433
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	86, 272, 400
CviAII	CATG	2 cut(s)	428, 483
CviQI	GTAC	3 cut(s)	86, 272, 400
DdeI	CTNAG	5 cut(s)	14, 138, 189, 243, 710
DpnI	GATC	5 cut(s)	381, 389, 549, 589, 638
DpnII	GATC	5 cut(s)	379, 387, 547, 587, 636
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	433
EcoRII	CCWGG	4 cut(s)	406, 583, 649, 723
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	431, 486
FaiI	YATR	3 cut(s)	212, 429, 484
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	2 cut(s)	427, 482
FauI	CCCGC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	127, 192
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	230, 350
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	431, 486
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	716
HpaII	CCGG	2 cut(s)	230, 350
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	186, 433
Hpy188III	TCNNGA	1 cut(s)	606
Hpy8I	GTNNAC	2 cut(s)	186, 433
HpyAV	CCTTC	4 cut(s)	89, 170, 319, 503
HpyCH4V	TGCA	2 cut(s)	120, 493
HpyF3I	CTNAG	5 cut(s)	14, 138, 189, 243, 710
Hsp92II	CATG	2 cut(s)	431, 486
HspAI	GCGC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	379, 387, 547, 587, 636
LmnI	GCTCC	3 cut(s)	61, 352, 676
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	480
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	1 cut(s)	473
MalI	GATC	5 cut(s)	381, 389, 549, 589, 638
MboI	GATC	5 cut(s)	379, 387, 547, 587, 636
MboII	GAAGA	4 cut(s)	59, 461, 700, 703
MflI	RGATCY	2 cut(s)	547, 587
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	2 cut(s)	261, 392
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	230, 350
MspR9I	CCNGG	5 cut(s)	231, 408, 585, 651, 725
MvaI	CCWGG	4 cut(s)	408, 585, 651, 725
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	5 cut(s)	379, 387, 547, 587, 636
NlaIII	CATG	2 cut(s)	431, 486
NlaIV	GGNNCC	3 cut(s)	63, 549, 589
NsiI	ATGCAT	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp6I	CCWGG	4 cut(s)	406, 583, 649, 723
PspGI	CCWGG	4 cut(s)	406, 583, 649, 723
PspN4I	GGNNCC	3 cut(s)	63, 549, 589
PspPI	GGNCC	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	547, 587
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	87, 273, 401
RsaNI	GTAC	3 cut(s)	86, 272, 400
SaqAI	TTAA	2 cut(s)	261, 392
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	379, 387, 547, 587, 636
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	5 cut(s)	231, 408, 585, 651, 725
SduI	GDGCHC	1 cut(s)	66
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	447
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	1 cut(s)	456
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	321, 643
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	5 cut(s)	229, 406, 583, 649, 723
TaqI	TCGA	1 cut(s)	447
TasI	AATT	1 cut(s)	456
TatI	WGTACW	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	261, 392
Tru9I	TTAA	2 cut(s)	261, 392
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	433
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.