Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Reverse (-)

21953032 .. 21955963

Gene Structure 2932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATGCTGCCAACGAGGAAATTCTGAGGCAAGTGTTCGGCGACTCATCGGACGGCGAGGACTTGGAATTGGGAGATGGATCTGACCCAAGCCATTCCTGGGAACCAATCAAAGAAATCAAAGGGTTGTGGTTGTGCAGAGACTTCCTCCCTCCTCAAAGCCAGTCTTCCTTGCTCTCCACAATCCAGAACGAAGGATGGTTCACTCAAGCCTCGCACAATCAGGCTATGAGATTTGGAGACCTTCCATCATGGGCAGCTGAGCTTTCGCATTCTATTCGCAAGGTTGTACTTGCGAGTGACTTTGTTCTTGAACCTATAGTATTGGGAAGTGCTGATAATGTGAAAGAGAATGCGTGTTCATTTCCATCAGATCTTTTCTGCAGAGAGCCACTCTTCGACCAACTAATTCTAAATTCTTACCAACCAGGTGAGGGGATCTGTGCACACATTGACCTTATGCGATTTGAAGATGGAATTGCCATTCTCTCCCTGGAGTCATCATGCGTGATGCATTTCAGTCTAGTTGATGGAACAAGCAGGGGCTTTTTAATGGATGGTGAAAAGGATCCGCCCATGGCCAAGATTCCTGTTTATCTTACCCCAGGGTCCCTAATTTTTATGTCAGGAGAAGCAAGGTACCTTTGGAAGCACGAGATTAACCGCATGCCTGGATTTCAGAAGTGGGAAGGGAAGGAACTAAATCAGAAGAGGAGAATCTCCATAACCCTGAGGAAGCTTTGCCAAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

252

Amino Acids

28.22

Weight (kDa)

4.85

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	639
AciI	CCGC	2 cut(s)	572, 664
AclWI	GGATC	4 cut(s)	88, 446, 563, 576
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	21, 415
AfaI	GTAC	2 cut(s)	291, 641
AfiI	CCNNNNNNNGG	2 cut(s)	100, 434
AgsI	TTSAA	2 cut(s)	314, 470
AjnI	CCWGG	5 cut(s)	98, 427, 492, 604, 670
AluBI	AGCT	3 cut(s)	260, 265, 739
AluI	AGCT	3 cut(s)	260, 265, 739
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	135, 234
Alw44I	GTGCAC	1 cut(s)	444
AlwI	GGATC	4 cut(s)	88, 446, 563, 576
AoxI	GGCC	1 cut(s)	579
ApaLI	GTGCAC	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	8, 257
ApoI	RAATTY	2 cut(s)	21, 415
Asp718I	GGTACC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	443, 572
AvaII	GGWCC	1 cut(s)	609
AxyI	CCTNAGG	1 cut(s)	731
BaeGI	GKGCMC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	639
BauI	CACGAG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	7 cut(s)	71, 192, 256, 376, 467, 524, 551
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	5 cut(s)	100, 429, 494, 606, 672
BcoDI	GTCTC	2 cut(s)	135, 234
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	2 cut(s)	318, 382
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	9, 258
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	10, 259
Bme1390I	CCNGG	5 cut(s)	100, 429, 494, 606, 672
Bme18I	GGWCC	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	5 cut(s)	105, 570, 610, 611, 641
BmrFI	CCNGG	5 cut(s)	100, 429, 494, 606, 672
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	4 cut(s)	132, 164, 378, 410
BpmI	CTGGAG	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	5 cut(s)	99, 492, 576, 604, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 434
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	731
BseBI	CCWGG	5 cut(s)	100, 429, 494, 606, 672
BseDI	CCNNGG	5 cut(s)	99, 492, 576, 604, 605
BseGI	GGATG	3 cut(s)	10, 203, 562
BseLI	CCNNNNNNNGG	2 cut(s)	100, 434
BseMII	CTCAG	3 cut(s)	17, 252, 722
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	144, 727
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	100, 434
BsmAI	GTCTC	2 cut(s)	135, 234
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	2 cut(s)	271, 358
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	80, 373, 438, 568
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	2 cut(s)	572, 664
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	3 cut(s)	18, 253, 723
BspLI	GGNNCC	5 cut(s)	105, 570, 610, 611, 641
BspMAI	CTGCAG	1 cut(s)	386
BspPI	GGATC	4 cut(s)	88, 446, 563, 576
BspT107I	GGYRCC	1 cut(s)	639
BspTNI	GGTCTC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	5 cut(s)	99, 492, 576, 604, 605
BssMI	GATC	4 cut(s)	80, 373, 438, 568
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	5 cut(s)	100, 429, 494, 606, 672
Bst6I	CTCTTC	2 cut(s)	401, 704
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	3 cut(s)	26, 261, 731
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	10, 203, 562
BstKTI	GATC	4 cut(s)	83, 376, 441, 571
BstMAI	GTCTC	2 cut(s)	135, 234
BstMBI	GATC	4 cut(s)	80, 373, 438, 568
BstNI	CCWGG	5 cut(s)	100, 429, 494, 606, 672
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	5 cut(s)	98, 427, 492, 604, 670
BstSFI	CTRYAG	2 cut(s)	318, 382
BstSLI	GKGCMC	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	4 cut(s)	80, 373, 438, 568
BstYI	RGATCY	4 cut(s)	80, 373, 438, 568
Bsu36I	CCTNAGG	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	10, 203, 562
Cac8I	GCNNGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	609
CsiI	ACCWGGT	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	290, 640
CviAII	CATG	4 cut(s)	252, 504, 577, 667
CviQI	GTAC	2 cut(s)	290, 640
DdeI	CTNAG	3 cut(s)	26, 261, 731
DpnI	GATC	4 cut(s)	82, 375, 440, 570
DpnII	GATC	4 cut(s)	80, 373, 438, 568
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	2 cut(s)	401, 704
EarI	CTCTTC	2 cut(s)	401, 704
EciI	GGCGGA	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	731
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRII	CCWGG	5 cut(s)	98, 427, 492, 604, 670
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	4 cut(s)	255, 507, 580, 670
FaiI	YATR	9 cut(s)	230, 253, 320, 461, 505, 578, 623, 668, 725
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	4 cut(s)	251, 503, 576, 666
Fnu4HI	GCNGC	2 cut(s)	9, 258
FokI	GGATG	3 cut(s)	17, 210, 569
Fsp4HI	GCNGC	2 cut(s)	9, 258
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	2 cut(s)	9, 258
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	581
Hin1II	CATG	4 cut(s)	255, 507, 580, 670
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	4 cut(s)	44, 497, 586, 717
HphI	GGTGA	2 cut(s)	443, 572
Hpy166II	GTNNAC	2 cut(s)	204, 446
Hpy188I	TCNGA	6 cut(s)	27, 52, 85, 373, 681, 708
Hpy188III	TCNNGA	3 cut(s)	187, 311, 627
Hpy8I	GTNNAC	2 cut(s)	204, 446
HpyAV	CCTTC	4 cut(s)	188, 254, 683, 688
HpyCH4V	TGCA	4 cut(s)	138, 384, 446, 514
HpyF3I	CTNAG	3 cut(s)	26, 261, 731
Hsp92II	CATG	4 cut(s)	255, 507, 580, 670
KflI	GGGWCCC	1 cut(s)	609
KpnI	GGTACC	1 cut(s)	643
Kzo9I	GATC	4 cut(s)	80, 373, 438, 568
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	501
MabI	ACCWGGT	1 cut(s)	427
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	4 cut(s)	82, 375, 440, 570
MboI	GATC	4 cut(s)	80, 373, 438, 568
MboII	GAAGA	4 cut(s)	159, 388, 482, 721
MflI	RGATCY	4 cut(s)	80, 373, 438, 568
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	6 cut(s)	21, 68, 408, 415, 477, 615
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	2 cut(s)	38, 506
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	2 cut(s)	551, 660
Msp20I	TGGCCA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	5 cut(s)	100, 429, 494, 606, 672
Mva1269I	GAATGC	2 cut(s)	271, 358
MvaI	CCWGG	5 cut(s)	100, 429, 494, 606, 672
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	80, 373, 438, 568
NlaIII	CATG	4 cut(s)	255, 507, 580, 670
NlaIV	GGNNCC	5 cut(s)	105, 570, 610, 611, 641
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	670
PaeI	GCATGC	1 cut(s)	670
PasI	CCCWGGG	1 cut(s)	605
PctI	GAATGC	2 cut(s)	271, 358
PfeI	GAWTC	2 cut(s)	586, 717
PkrI	GCNGC	2 cut(s)	10, 259
PleI	GAGTC	2 cut(s)	38, 505
PpsI	GAGTC	2 cut(s)	38, 505
PpuMI	RGGWCCY	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	5 cut(s)	98, 427, 492, 604, 670
PspGI	CCWGG	5 cut(s)	98, 427, 492, 604, 670
PspN4I	GGNNCC	5 cut(s)	105, 570, 610, 611, 641
PspPI	GGNCC	1 cut(s)	609
PspPPI	RGGWCCY	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	386
PsuI	RGATCY	4 cut(s)	80, 373, 438, 568
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	291, 641
RsaNI	GTAC	2 cut(s)	290, 640
SaqAI	TTAA	2 cut(s)	551, 660
SatI	GCNGC	2 cut(s)	9, 258
Sau3AI	GATC	4 cut(s)	80, 373, 438, 568
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	2 cut(s)	38, 506
ScrFI	CCNGG	5 cut(s)	100, 429, 494, 606, 672
SduI	GDGCHC	1 cut(s)	448
SexAI	ACCWGGT	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	2 cut(s)	318, 382
SinI	GGWCC	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	6 cut(s)	21, 68, 408, 415, 477, 615
SsiI	CCGC	2 cut(s)	572, 664
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	5 cut(s)	98, 427, 492, 604, 670
StyI	CCWWGG	1 cut(s)	576
TaqI	TCGA	1 cut(s)	399
TasI	AATT	6 cut(s)	21, 68, 408, 415, 477, 615
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	586, 717
Tru1I	TTAA	2 cut(s)	551, 660
Tru9I	TTAA	2 cut(s)	551, 660
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	8, 257
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	351
VneI	GTGCAC	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	2 cut(s)	21, 415
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	2 cut(s)	96, 490
XspI	CTAG	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.