Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Reverse (-)

55122364 .. 55124790

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG351100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATGTTAGAAAGGAAATTCTCAGGCAGGTGTTCGGCGATTCATCGGATAGTGAAGACTTGGAATTGGGCGATGGATCGGAGTCCGACCCGAATCAGAGATGGGTACCAATAGAACAAATCAAAGGGCTGTGGCTGTGCAGAGACTTCCTCTCTCCTCAGAACCAGTCTGCCTTGCTCTCCACAATCCAAAACGAAGGATGGTTCACTGAAGCCTCTCACAATCAGGCTATGAGGTTCGGAGACCTTCCGGATTGGGCAGCTGAGCTTTCGGATTCTATTCACAAGGTTGTGCTTTCATGTGATAGTGATTCTCATCCTATCGAGTTGGGAAGTGCTTGTGATGGGAAGCAGAATGGCAGTCCGTTTCCGTCGGAACTTTTATCCAGAGTGCCACTCTTTGATCAACTTATCCTAAACTCTTACCAACCAGGTGAGGGGATCTGCGCCCACGTTGACCTATTGCGCTTTGAAGATGGAATTGCTATCCTCTCCCTAGAGTCATCATGTGTGATGCATTTTAGTCCAGTTGAAGGAACAAGTGGGGGCTTTCTAGAGGATCAGGGAAAGGATCCAGTGACGACCAAGATTCCTGTTTATCTTACACCAGGATCCCTGATTCTAATGTCAGGAGAAGCACGCTACCAATGGAAGCACGAGATCAACCGCAAACCTGGATTTCAGAAGTGGCAAGGAGAGGAGCTAAATCAGAAGAAGAGAATCTCCGTTACTCTGAGGAAGCTTTGCCAGGTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

252

Amino Acids

28.16

Weight (kDa)

4.78

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	44 - 246	3.6e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	1 cut(s)	667
AclWI	GGATC	7 cut(s)	85, 449, 566, 567, 579, 606, 619
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	437, 533
AgsI	TTSAA	2 cut(s)	473, 533
AjnI	CCWGG	4 cut(s)	430, 607, 673, 747
AluBI	AGCT	4 cut(s)	263, 268, 703, 742
AluI	AGCT	4 cut(s)	263, 268, 703, 742
Alw26I	GTCTC	2 cut(s)	138, 237
AlwI	GGATC	7 cut(s)	85, 449, 566, 567, 579, 606, 619
Aor13HI	TCCGGA	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	18
Asp718I	GGTACC	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	449, 468
AsuHPI	GGTGA	1 cut(s)	446
BamHI	GGATCC	2 cut(s)	571, 611
BanI	GGYRCC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	5 cut(s)	68, 96, 195, 338, 470
BciT130I	CCWGG	4 cut(s)	432, 609, 675, 749
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	138, 237
BfaI	CTAG	3 cut(s)	497, 554, 757
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	4 cut(s)	432, 609, 675, 749
BmiI	GGNNCC	3 cut(s)	108, 573, 613
BmrFI	CCNGG	4 cut(s)	432, 609, 675, 749
BmsI	GCATC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	4 cut(s)	135, 167, 381, 413
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 533
Bse1I	ACTGG	3 cut(s)	166, 527, 575
Bse8I	GATNNNNATC	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	4 cut(s)	432, 609, 675, 749
BseGI	GGATG	3 cut(s)	10, 206, 316
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	437, 533
BseMII	CTCAG	4 cut(s)	37, 173, 255, 725
BseNI	ACTGG	3 cut(s)	166, 527, 575
BseRI	GAGGAG	2 cut(s)	147, 713
BseXI	GCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	437, 533
BsmAI	GTCTC	2 cut(s)	138, 237
Bso31I	GGTCTC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	667
BspCNI	CTCAG	4 cut(s)	36, 172, 256, 726
BspEI	TCCGGA	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	108, 573, 613
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	7 cut(s)	85, 449, 566, 567, 579, 606, 619
BspT107I	GGYRCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	166, 527, 575
BssMI	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
BssSI	CACGAG	1 cut(s)	656
Bst2BI	CACGAG	1 cut(s)	656
Bst2UI	CCWGG	4 cut(s)	432, 609, 675, 749
Bst6I	CTCTTC	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	4 cut(s)	23, 159, 264, 734
BstF5I	GGATG	3 cut(s)	10, 206, 316
BstHHI	GCGC	2 cut(s)	449, 468
BstKTI	GATC	7 cut(s)	80, 406, 444, 562, 574, 614, 663
BstMAI	GTCTC	2 cut(s)	138, 237
BstMBI	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
BstNI	CCWGG	4 cut(s)	432, 609, 675, 749
BstSCI	CCNGG	4 cut(s)	430, 607, 673, 747
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	3 cut(s)	441, 571, 611
BstYI	RGATCY	3 cut(s)	441, 571, 611
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	10, 206, 316
BtsIMutI	CAGTG	2 cut(s)	207, 582
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	640
CfoI	GCGC	2 cut(s)	449, 468
CsiI	ACCWGGT	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	300, 507
CviJI	RGCY	9 cut(s)	130, 136, 215, 230, 263, 268, 549, 703, 742
CviKI_1	RGCY	9 cut(s)	130, 136, 215, 230, 263, 268, 549, 703, 742
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	4 cut(s)	23, 159, 264, 734
DpnI	GATC	7 cut(s)	79, 405, 443, 561, 573, 613, 662
DpnII	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	4 cut(s)	430, 607, 673, 747
EcoT22I	ATGCAT	1 cut(s)	519
FaeI	CATG	2 cut(s)	303, 510
FaiI	YATR	3 cut(s)	233, 301, 508
FatI	CATG	2 cut(s)	299, 506
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	3 cut(s)	17, 213, 303
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	3 cut(s)	497, 554, 757
GlaI	GCGC	2 cut(s)	448, 467
GluI	GCNGC	1 cut(s)	261
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	2 cut(s)	449, 468
Hin1II	CATG	2 cut(s)	303, 510
Hin6I	GCGC	2 cut(s)	447, 466
HinP1I	GCGC	2 cut(s)	447, 466
HincII	GTYRAC	2 cut(s)	457, 754
HindII	GTYRAC	2 cut(s)	457, 754
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	9 cut(s)	41, 83, 94, 275, 311, 500, 589, 619, 720
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	207, 457, 754
Hpy188III	TCNNGA	4 cut(s)	251, 387, 554, 630
Hpy8I	GTNNAC	3 cut(s)	207, 457, 754
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	191, 257, 527
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	141, 517
HpyF3I	CTNAG	4 cut(s)	23, 159, 264, 734
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	303, 510
HspAI	GCGC	2 cut(s)	447, 466
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
LmnI	GCTCC	1 cut(s)	700
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	504
MabI	ACCWGGT	1 cut(s)	430
MaeI	CTAG	3 cut(s)	497, 554, 757
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	577, 727
MalI	GATC	7 cut(s)	79, 405, 443, 561, 573, 613, 662
MboI	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
MboII	GAAGA	4 cut(s)	68, 485, 724, 727
MflI	RGATCY	3 cut(s)	441, 571, 611
MluCI	AATT	3 cut(s)	18, 65, 480
MlyI	GAGTC	2 cut(s)	92, 509
MmeI	TCCRAC	2 cut(s)	111, 354
MnlI	CCTC	9 cut(s)	161, 168, 226, 228, 430, 500, 550, 691, 729
Mph1103I	ATGCAT	1 cut(s)	519
MroI	TCCGGA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	4 cut(s)	432, 609, 675, 749
MvaI	CCWGG	4 cut(s)	432, 609, 675, 749
NdeII	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
NlaIII	CATG	2 cut(s)	303, 510
NlaIV	GGNNCC	3 cut(s)	108, 573, 613
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	519
PaqCI	CACCTGC	1 cut(s)	19
PfeI	GAWTC	7 cut(s)	41, 94, 275, 311, 589, 619, 720
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	91, 508
PpsI	GAGTC	2 cut(s)	91, 508
Psp6I	CCWGG	4 cut(s)	430, 607, 673, 747
PspGI	CCWGG	4 cut(s)	430, 607, 673, 747
PspN4I	GGNNCC	3 cut(s)	108, 573, 613
PsuI	RGATCY	3 cut(s)	441, 571, 611
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	7 cut(s)	77, 403, 441, 559, 571, 611, 660
SchI	GAGTC	2 cut(s)	92, 509
ScrFI	CCNGG	4 cut(s)	432, 609, 675, 749
SexAI	ACCWGGT	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	504
Sse9I	AATT	3 cut(s)	18, 65, 480
SsiI	CCGC	1 cut(s)	667
SspMI	CTAG	3 cut(s)	497, 554, 757
StyD4I	CCNGG	4 cut(s)	430, 607, 673, 747
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	18, 65, 480
TfiI	GAWTC	7 cut(s)	41, 94, 275, 311, 589, 619, 720
TscAI	CASTG	2 cut(s)	214, 582
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	2 cut(s)	33, 288
TspGWI	ACGGA	3 cut(s)	354, 360, 715
TspRI	CASTG	2 cut(s)	214, 582
XapI	RAATTY	1 cut(s)	18
XbaI	TCTAGA	1 cut(s)	553
XspI	CTAG	3 cut(s)	497, 554, 757
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.