Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Reverse (-)

41972056 .. 41974929

Gene Structure 2874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1304900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACTATGGATGCTGCGAGCAAAGAAATTCTCCGGCACGTATTCGGCGATTCGTCGGACAGCGAGGACTGGGAACCGGGCGATGGATCCGATTCCGACCCGACCCATTTCTGGGAACCAATCAAACAAATCAAAGGGCTGTGGTTGTGCAGAGACTTCCTCTCTCCTCAGCACCAGTCCTCTTTGCTCTCCACAATCCAAAACGAAGGATGGTTCACTCAAGCCTCTCATAATCAGGCAATGAGGTTTGGGGATCTTCCAGCATGGGCGGACGAGCTTTCGCGTTCTATTCACAAGGTTGCGCTTGCAAGTGACTATGTTTTTGATCCTATTGTTTTGGGAAGCAATGATGGTGTGAAGGAGAATGCCTCTCCATTTCCATCCGATCTTTTGTGCAGAGAGCCGCTCTTTGACCAGCTCATTCTAAATTCTTACCAACCGGGTGAGGGGATCTGTGCGCACGTTGATCTCATGCGCTTCGAAGATGGAATTGCCATTCTCTCCCTGGAGTCGTCATGTGTGATGGATTTTAGTCAAGTTGAAGGAACAAGTAGGGAAAATGATCCCCCTGTGGCCAAGATTCCAGTTTACCTTACCCCCGGATCCCTAATTTTCATGTCAGGAGAAGCGCGATACCATTGGAAGCACGAGATCAACCGCACGCCTGGAATTCAGAAGTGGGAAGGGGAGGAACTAACTCAGACGAGGAGAATCTCCATAACCCTGAGGAAGCTCTGCCAAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

250

Amino Acids

28.07

Weight (kDa)

4.78

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	47 - 243	3.5e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	2 cut(s)	283, 631
AciI	CCGC	3 cut(s)	269, 404, 658
AclWI	GGATC	8 cut(s)	81, 94, 261, 320, 458, 557, 597, 610
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	3 cut(s)	27, 427, 669
AfiI	CCNNNNNNNGG	4 cut(s)	83, 111, 112, 446
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	2 cut(s)	504, 664
AluBI	AGCT	3 cut(s)	277, 418, 733
AluI	AGCT	3 cut(s)	277, 418, 733
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	8 cut(s)	81, 94, 261, 320, 458, 557, 597, 610
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	3 cut(s)	27, 427, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	4 cut(s)	304, 460, 477, 631
AsuC2I	CCSGG	3 cut(s)	78, 441, 600
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	480
AxyI	CCTNAGG	1 cut(s)	725
BalI	TGGCCA	1 cut(s)	575
BamHI	GGATCC	2 cut(s)	86, 602
BauI	CACGAG	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	168
BccI	CCATC	6 cut(s)	77, 204, 344, 388, 479, 517
BciT130I	CCWGG	2 cut(s)	506, 666
BcnI	CCSGG	3 cut(s)	78, 441, 600
BcoDI	GTCTC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	15, 404
BlsI	GCNGC	2 cut(s)	16, 405
Bme1390I	CCNGG	5 cut(s)	78, 441, 506, 600, 666
BmiI	GGNNCC	4 cut(s)	75, 88, 117, 604
BmrFI	CCNGG	5 cut(s)	78, 441, 506, 600, 666
BmrI	ACTGGG	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	6 cut(s)	144, 176, 353, 385, 390, 422
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	3 cut(s)	78, 441, 600
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	504, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 111, 112, 446
Bse1I	ACTGG	3 cut(s)	74, 175, 584
Bse21I	CCTNAGG	1 cut(s)	725
Bse3DI	GCAATG	2 cut(s)	246, 352
BseBI	CCWGG	2 cut(s)	506, 666
BseDI	CCNNGG	2 cut(s)	504, 598
BseGI	GGATG	3 cut(s)	16, 215, 380
BseLI	CCNNNNNNNGG	4 cut(s)	83, 111, 112, 446
BseMI	GCAATG	2 cut(s)	246, 352
BseMII	CTCAG	3 cut(s)	182, 713, 716
BseNI	ACTGG	3 cut(s)	74, 175, 584
BseRI	GAGGAG	2 cut(s)	156, 721
BsgI	GTGCAG	2 cut(s)	169, 415
Bsh1236I	CGCG	2 cut(s)	283, 631
BshFI	GGCC	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	34, 77, 440, 600
BslI	CCNNNNNNNGG	4 cut(s)	83, 111, 112, 446
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	575
Bsp119I	TTCGAA	1 cut(s)	480
Bsp143I	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
BspACI	CCGC	3 cut(s)	269, 404, 658
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	3 cut(s)	181, 712, 717
BspFNI	CGCG	2 cut(s)	283, 631
BspLI	GGNNCC	4 cut(s)	75, 88, 117, 604
BspPI	GGATC	8 cut(s)	81, 94, 261, 320, 458, 557, 597, 610
BspT104I	TTCGAA	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	246, 352
BsrI	ACTGG	3 cut(s)	74, 175, 584
BssECI	CCNNGG	2 cut(s)	504, 598
BssMI	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
BssSI	CACGAG	1 cut(s)	647
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	2 cut(s)	506, 666
BstBAI	YACGTR	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	19, 306, 662
BstDEI	CTNAG	3 cut(s)	168, 699, 725
BstF5I	GGATG	3 cut(s)	16, 215, 380
BstFNI	CGCG	2 cut(s)	283, 631
BstHHI	GCGC	4 cut(s)	304, 460, 477, 631
BstKTI	GATC	9 cut(s)	89, 256, 328, 388, 453, 469, 565, 605, 654
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
BstNI	CCWGG	2 cut(s)	506, 666
BstSCI	CCNGG	5 cut(s)	76, 439, 504, 598, 664
BstUI	CGCG	2 cut(s)	283, 631
BstX2I	RGATCY	4 cut(s)	86, 253, 450, 602
BstYI	RGATCY	4 cut(s)	86, 253, 450, 602
Bsu36I	CCTNAGG	1 cut(s)	725
BsuRI	GGCC	1 cut(s)	575
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	16, 215, 380
Cac8I	GCNNGC	3 cut(s)	19, 306, 662
CfoI	GCGC	4 cut(s)	304, 460, 477, 631
CviAII	CATG	4 cut(s)	264, 472, 516, 616
CviJI	RGCY	7 cut(s)	139, 224, 277, 403, 418, 575, 733
CviKI_1	RGCY	7 cut(s)	139, 224, 277, 403, 418, 575, 733
DdeI	CTNAG	3 cut(s)	168, 699, 725
DpnI	GATC	9 cut(s)	88, 255, 327, 387, 452, 468, 564, 604, 653
DpnII	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
EaeI	YGGCCR	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	504, 664
FaeI	CATG	4 cut(s)	267, 475, 519, 619
FaiI	YATR	8 cut(s)	8, 231, 265, 318, 473, 517, 617, 719
FatI	CATG	4 cut(s)	263, 471, 515, 615
Fnu4HI	GCNGC	2 cut(s)	15, 404
FokI	GGATG	3 cut(s)	23, 222, 367
Fsp4HI	GCNGC	2 cut(s)	15, 404
FspAI	RTGCGCAY	1 cut(s)	459
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	4 cut(s)	303, 459, 476, 630
GluI	GCNGC	2 cut(s)	15, 404
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	4 cut(s)	34, 77, 440, 600
HhaI	GCGC	4 cut(s)	304, 460, 477, 631
Hin1II	CATG	4 cut(s)	267, 475, 519, 619
Hin6I	GCGC	4 cut(s)	302, 458, 475, 629
HinP1I	GCGC	4 cut(s)	302, 458, 475, 629
HinfI	GANTC	5 cut(s)	50, 92, 509, 580, 711
HpaII	CCGG	4 cut(s)	34, 77, 440, 600
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	216, 589
Hpy188I	TCNGA	6 cut(s)	58, 91, 97, 385, 675, 702
Hpy188III	TCNNGA	1 cut(s)	621
Hpy8I	GTNNAC	2 cut(s)	216, 589
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	200, 352, 536, 677
HpyCH4IV	ACGT	2 cut(s)	39, 462
HpyCH4V	TGCA	3 cut(s)	150, 308, 396
HpyF3I	CTNAG	3 cut(s)	168, 699, 725
HpySE526I	ACGT	2 cut(s)	39, 462
Hsp92II	CATG	4 cut(s)	267, 475, 519, 619
HspAI	GCGC	4 cut(s)	302, 458, 475, 629
Kzo9I	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
MaeII	ACGT	2 cut(s)	39, 462
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	9 cut(s)	88, 255, 327, 387, 452, 468, 564, 604, 653
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
MboII	GAAGA	2 cut(s)	248, 494
MflI	RGATCY	4 cut(s)	86, 253, 450, 602
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	5 cut(s)	27, 427, 489, 609, 669
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	36, 120
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	575
MspI	CCGG	4 cut(s)	34, 77, 440, 600
MspR9I	CCNGG	5 cut(s)	78, 441, 506, 600, 666
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	506, 666
MvnI	CGCG	2 cut(s)	283, 631
NciI	CCSGG	3 cut(s)	78, 441, 600
NdeII	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
NlaIII	CATG	4 cut(s)	267, 475, 519, 619
NlaIV	GGNNCC	4 cut(s)	75, 88, 117, 604
NmuCI	GTSAC	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	459
NspV	TTCGAA	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	4 cut(s)	50, 92, 580, 711
PkrI	GCNGC	2 cut(s)	16, 405
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	504, 664
PspGI	CCWGG	2 cut(s)	504, 664
PspN4I	GGNNCC	4 cut(s)	75, 88, 117, 604
PsuI	RGATCY	4 cut(s)	86, 253, 450, 602
SatI	GCNGC	2 cut(s)	15, 404
Sau3AI	GATC	9 cut(s)	86, 253, 325, 385, 450, 466, 562, 602, 651
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	5 cut(s)	78, 441, 506, 600, 666
SetI	ASST	8 cut(s)	42, 248, 279, 300, 420, 465, 594, 735
SfuI	TTCGAA	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	5 cut(s)	27, 427, 489, 609, 669
SsiI	CCGC	3 cut(s)	269, 404, 658
StyD4I	CCNGG	5 cut(s)	76, 439, 504, 598, 664
TaiI	ACGT	2 cut(s)	42, 465
TaqI	TCGA	1 cut(s)	480
TasI	AATT	5 cut(s)	27, 427, 489, 609, 669
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	4 cut(s)	50, 92, 580, 711
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	604
XapI	RAATTY	3 cut(s)	27, 427, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.