Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014442

Physical Location & Seq

Genomic Coordinates Reverse (-)

1229031 .. 1230164

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCGCCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCCAAATCCCTCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGCCGCCGCTGCTGCAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACACACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGCGCAAGTGGAAGAGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGATGCCGACAGGAGGAGCAGCGATCATGAGAGAAGGTCCGAATCTTCTGAAGCTAGCGAGGAAAGAGCAGTGTTTAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATCACTTACCAGTTTTACAGAGTGTTTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGAATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAAAATGTTAGTCCCATTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsaD

Protein Analysis

208

Amino Acids

22.6

Weight (kDa)

9.78

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaD	PF02531	75 - 206	1.2e-67	PsaD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03130 AT4G02770
fragaria_vesca	FvH4_4g15260
malus_domestica	MD13G1191300.v1.1 MD16G1191400.v1.1
prunus_persica	Prupe.1G011500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416571
rosa_laevigata	RLG00000007973
rosa_multiflora	Rmu_sc0003722.1_g000040
rosa_roxburghii	Rroxscaffold_5G00360450
rosa_rugosa	Rorug04G0143000
rosa_samantha	Rh4AG205400 Rh4BG203000 Rh4CG216300 Rh4DG202500
rosa_wichuraiana	Rw0G013510 Rw4G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AclWI	GGATC	2 cut(s)	29, 423
AcuI	CTGAAG	1 cut(s)	401
AcvI	CACGTG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	344, 503
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	28, 485, 590
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	188, 214, 385, 410
AluI	AGCT	4 cut(s)	188, 214, 385, 410
Alw26I	GTCTC	2 cut(s)	237, 554
AlwI	GGATC	2 cut(s)	29, 423
ApeKI	GCWGC	5 cut(s)	161, 164, 167, 211, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	134, 277
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	106, 303, 488
AsuNHI	GCTAGC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	368
BbrPI	CACGTG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	5 cut(s)	148, 151, 179, 223, 362
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	237, 554
BfaI	CTAG	2 cut(s)	215, 386
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	2 cut(s)	324, 560
BisI	GCNGC	9 cut(s)	15, 48, 156, 159, 162, 165, 168, 212, 351
BlsI	GCNGC	9 cut(s)	16, 49, 157, 160, 163, 166, 169, 213, 352
Bme1390I	CCNGG	2 cut(s)	19, 531
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmrFI	CCNGG	2 cut(s)	19, 531
BmsI	GCATC	1 cut(s)	324
BmtI	GCTAGC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	2 cut(s)	269, 303
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 503
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	451, 607
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	344, 503
BseNI	ACTGG	2 cut(s)	451, 607
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	5 cut(s)	148, 151, 179, 223, 362
Bsh1236I	CGCG	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	18, 57, 255
BslFI	GGGAC	3 cut(s)	81, 430, 567
BslI	CCNNNNNNNGG	2 cut(s)	344, 503
BsmAI	GTCTC	2 cut(s)	237, 554
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	81, 430, 567
Bso31I	GGTCTC	1 cut(s)	554
Bsp143I	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	29, 423
BspTNI	GGTCTC	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	451, 607
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	95, 231, 476
Bst6I	CTCTTC	2 cut(s)	279, 529
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	2 cut(s)	269, 303
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	134, 277
BstKTI	GATC	7 cut(s)	24, 240, 327, 357, 431, 444, 563
BstMAI	GTCTC	2 cut(s)	237, 554
BstMBI	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 131, 161, 164, 167, 173, 211
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	17, 529
BstSFI	CTRYAG	1 cut(s)	165
BstSNI	TACGTA	1 cut(s)	269
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	5 cut(s)	148, 151, 179, 223, 362
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	4 cut(s)	21, 324, 428, 560
BstYI	RGATCY	4 cut(s)	21, 324, 428, 560
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	387
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	2 cut(s)	134, 277
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	436
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	2 cut(s)	358, 556
CviJI	RGCY	7 cut(s)	14, 170, 188, 214, 385, 410, 424
CviKI_1	RGCY	7 cut(s)	14, 170, 188, 214, 385, 410, 424
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	7 cut(s)	23, 239, 326, 356, 430, 443, 562
DpnII	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
Eam1104I	CTCTTC	2 cut(s)	279, 529
EarI	CTCTTC	2 cut(s)	279, 529
EciI	GGCGGA	2 cut(s)	22, 142
Eco105I	TACGTA	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	401
Eco72I	CACGTG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	2 cut(s)	361, 559
FaiI	YATR	4 cut(s)	38, 359, 557, 618
FaqI	GGGAC	3 cut(s)	81, 430, 567
FatI	CATG	2 cut(s)	357, 555
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	9 cut(s)	15, 48, 156, 159, 162, 165, 168, 212, 351
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	9 cut(s)	15, 48, 156, 159, 162, 165, 168, 212, 351
FspBI	CTAG	2 cut(s)	215, 386
GlaI	GCGC	2 cut(s)	133, 276
GluI	GCNGC	9 cut(s)	15, 48, 156, 159, 162, 165, 168, 212, 351
HapII	CCGG	3 cut(s)	18, 57, 255
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	134, 277
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	361, 559
Hin6I	GCGC	2 cut(s)	132, 275
HinP1I	GCGC	2 cut(s)	132, 275
HinfI	GANTC	4 cut(s)	146, 198, 373, 526
HpaII	CCGG	3 cut(s)	18, 57, 255
HphI	GGTGA	3 cut(s)	106, 303, 488
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	3 cut(s)	237, 372, 381
Hpy188III	TCNNGA	3 cut(s)	64, 358, 515
Hpy8I	GTNNAC	1 cut(s)	600
HpyAV	CCTTC	4 cut(s)	121, 359, 514, 533
HpyCH4III	ACNGT	3 cut(s)	95, 231, 476
HpyCH4IV	ACGT	3 cut(s)	268, 294, 302
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 131, 161, 164, 167, 173, 211
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	3 cut(s)	268, 294, 302
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	361, 559
HspAI	GCGC	2 cut(s)	132, 275
Kzo9I	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
LmnI	GCTCC	2 cut(s)	193, 347
Lsp1109I	GCAGC	5 cut(s)	148, 151, 179, 223, 362
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	215, 386
MaeII	ACGT	3 cut(s)	268, 294, 302
MalI	GATC	7 cut(s)	23, 239, 326, 356, 430, 443, 562
MboI	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
MboII	GAAGA	7 cut(s)	16, 232, 254, 296, 368, 482, 546
MflI	RGATCY	4 cut(s)	21, 324, 428, 560
MnlI	CCTC	6 cut(s)	64, 116, 160, 338, 384, 472
MseI	TTAA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	18, 57, 255
MspR9I	CCNGG	2 cut(s)	19, 531
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	7 cut(s)	11, 131, 161, 164, 167, 173, 211
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	2 cut(s)	361, 559
NmeAIII	GCCGAG	1 cut(s)	160
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	146, 198, 373, 526
PfoI	TCCNGGA	1 cut(s)	529
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	9 cut(s)	16, 49, 157, 160, 163, 166, 169, 213, 352
PmaCI	CACGTG	1 cut(s)	303
PmlI	CACGTG	1 cut(s)	303
Ppu21I	YACGTR	2 cut(s)	269, 303
Psp6I	CCWGG	1 cut(s)	529
PspCI	CACGTG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	529
PspPI	GGNCC	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	4 cut(s)	21, 324, 428, 560
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	9 cut(s)	15, 48, 156, 159, 162, 165, 168, 212, 351
Sau3AI	GATC	7 cut(s)	21, 237, 324, 354, 428, 441, 560
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	19, 531
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	165
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SnaBI	TACGTA	1 cut(s)	269
SspMI	CTAG	2 cut(s)	215, 386
StyD4I	CCNGG	2 cut(s)	17, 529
TaaI	ACNGT	3 cut(s)	95, 231, 476
TaiI	ACGT	3 cut(s)	271, 297, 305
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	4 cut(s)	17, 50, 158, 161
TfiI	GAWTC	4 cut(s)	146, 198, 373, 526
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	407
TseI	GCWGC	5 cut(s)	161, 164, 167, 211, 350
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	368
XspI	CTAG	2 cut(s)	215, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.