MD16G1191400.v1.1

Photosystem I reaction center subunit II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014442
Physical Location & Seq
Forward (+)
16862173 .. 16862814
642 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1191400.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGCCATGGCAACACAAGCCAGCCTCTTCACCCCAACCCCCTCAGTCCCAAAGACCACCGCCGACCGTACAACCGCCCCATGGAAGCAATCAGTCTCCTCCTCCTTCATGCCCCCCAAGCCACTCAAGCTTTCCACCACAAGAACAATGAGGATTAATGCCTCCGCTGAAGAGAAAACCGTGACCACCACGAAAGAGGAGGCTCCGGTAGGATTCACCCCACCCGAGCTGGACCCAACAACTCCCTCGCCGATCTTTGGCGGCAGCACCGGCGGGCTGTTGAGGAAAGCGCAGGAGGAAGAGTTTTACGTGATCACATGGGAGTCACCAAAGGAGCAGATTTTTGAGATGCCGACCGGCGGAGCAGCCATCATGAGGGAGGGTCCTAACTTGTTGAAACTGGCTAGGAAAGAGCAGTGCTTGGCTCTTGGGACAAGGCTGAGGTCAAAGTACAAGATTAAGTACCAGTTTTACAGGGTTTTCCCTAACGGGGAGGTCCAATACTTGCACCCCAAGGATGGTGTGTACCCTGAGAAGGTGAACCCTGGGCGCCAAGGGGTTGGCCAGAACTTTAGGTCGATTGGGAAGAATGTCAACCCAATTGAGGTCAAGTTCACCGGCAAGCAAGTCTATGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsaD

Protein Analysis

214

Amino Acids

23.67

Weight (kDa)

9.6

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaD PF02531 81 - 211 5.6e-69 PsaD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014442)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03130 AT4G02770
fragaria_vesca FvH4_4g15260
malus_domestica MD13G1191300.v1.1 MD16G1191400.v1.1
prunus_persica Prupe.1G011500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416571
rosa_laevigata RLG00000007973
rosa_multiflora Rmu_sc0003722.1_g000040
rosa_roxburghii Rroxscaffold_5G00360450
rosa_rugosa Rorug04G0143000
rosa_samantha Rh4AG205400 Rh4BG203000 Rh4CG216300 Rh4DG202500
rosa_wichuraiana Rw0G013510 Rw4G017390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 549
AciI CCGC 6 cut(s) 60, 75, 165, 261, 273, 360
AcoI YGGCCR 2 cut(s) 3, 562
AcuI CTGAAG 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 4 cut(s) 70, 452, 464, 527
AfiI CCNNNNNNNGG 8 cut(s) 81, 257, 359, 375, 490, 518, 535, 604
AgsI TTSAA 1 cut(s) 397
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 2 cut(s) 130, 229
AluI AGCT 2 cut(s) 130, 229
Alw26I GTCTC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 2 cut(s) 3, 562
ApeKI GCWGC 2 cut(s) 264, 365
AseI ATTAAT 1 cut(s) 156
AspLEI GCGC 2 cut(s) 292, 552
AspS9I GGNCC 3 cut(s) 232, 383, 496
AsuHPI GGTGA 5 cut(s) 22, 208, 318, 550, 607
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 3 cut(s) 232, 383, 496
BalI TGGCCA 2 cut(s) 5, 564
BanI GGYRCC 1 cut(s) 549
BbvCI CCTCAGC 1 cut(s) 440
BbvI GCAGC 2 cut(s) 276, 377
BccI CCATC 2 cut(s) 377, 512
BciT130I CCWGG 1 cut(s) 546
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 553
BisI GCNGC 3 cut(s) 262, 265, 366
BlsI GCNGC 3 cut(s) 263, 266, 367
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 3 cut(s) 232, 383, 496
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 232, 383, 496
BmiI GGNNCC 4 cut(s) 204, 234, 384, 551
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 550
BsaJI CCNNGG 6 cut(s) 6, 80, 513, 544, 545, 553
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 8 cut(s) 81, 257, 359, 375, 490, 518, 535, 604
Bse118I RCCGGY 3 cut(s) 269, 356, 617
Bse1I ACTGG 2 cut(s) 405, 466
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 6 cut(s) 6, 80, 513, 544, 545, 553
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 8 cut(s) 81, 257, 359, 375, 490, 518, 535, 604
BseMII CTCAG 3 cut(s) 57, 431, 522
BseNI ACTGG 2 cut(s) 405, 466
BseRI GAGGAG 3 cut(s) 88, 91, 212
BseXI GCAGC 2 cut(s) 276, 377
Bsh1285I CGRYCG 2 cut(s) 67, 357
BshFI GGCC 2 cut(s) 5, 564
BshNI GGYRCC 1 cut(s) 549
BsiEI CGRYCG 2 cut(s) 67, 357
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 4 cut(s) 206, 270, 357, 618
BslFI GGGAC 2 cut(s) 32, 445
BslI CCNNNNNNNGG 8 cut(s) 81, 257, 359, 375, 490, 518, 535, 604
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 32, 445
BsnI GGCC 2 cut(s) 5, 564
BsoBI CYCGRG 1 cut(s) 224
Bsp143I GATC 2 cut(s) 252, 312
Bsp19I CCATGG 2 cut(s) 6, 80
BspACI CCGC 6 cut(s) 60, 75, 165, 261, 273, 360
BspANI GGCC 2 cut(s) 5, 564
BspCNI CTCAG 3 cut(s) 56, 432, 523
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 204, 234, 384, 551
BspT107I GGYRCC 1 cut(s) 549
BsrFI RCCGGY 3 cut(s) 269, 356, 617
BsrI ACTGG 2 cut(s) 405, 466
BssAI RCCGGY 3 cut(s) 269, 356, 617
BssECI CCNNGG 6 cut(s) 6, 80, 513, 544, 545, 553
BssMI GATC 2 cut(s) 252, 312
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 4 cut(s) 6, 80, 513, 553
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 2 cut(s) 68, 181
Bst6I CTCTTC 3 cut(s) 32, 165, 294
BstACI GRCGYC 1 cut(s) 550
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 22, 275, 623
BstDEI CTNAG 3 cut(s) 43, 440, 531
BstDSI CCRYGG 2 cut(s) 6, 80
BstF5I GGATG 1 cut(s) 523
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 292, 552
BstKTI GATC 2 cut(s) 255, 315
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 252, 312
BstMCI CGRYCG 2 cut(s) 67, 357
BstMWI GCNNNNNNNGC 4 cut(s) 17, 118, 127, 270
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 276, 377
BstXI CCANNNNNNTGG 1 cut(s) 560
BsuRI GGCC 2 cut(s) 5, 564
BtgI CCRYGG 2 cut(s) 6, 80
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 22, 275, 623
CciI TCATGA 1 cut(s) 372
CfoI GCGC 2 cut(s) 292, 552
Cfr10I RCCGGY 3 cut(s) 269, 356, 617
Cfr13I GGNCC 3 cut(s) 232, 383, 496
Csp6I GTAC 4 cut(s) 69, 451, 463, 526
CviAII CATG 5 cut(s) 7, 81, 109, 318, 373
CviQI GTAC 4 cut(s) 69, 451, 463, 526
DdeI CTNAG 3 cut(s) 43, 440, 531
DinI GGCGCC 1 cut(s) 551
DpnI GATC 2 cut(s) 254, 314
DpnII GATC 2 cut(s) 252, 312
EaeI YGGCCR 2 cut(s) 3, 562
Eam1104I CTCTTC 3 cut(s) 32, 165, 294
EarI CTCTTC 3 cut(s) 32, 165, 294
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 4 cut(s) 6, 80, 513, 553
Eco47I GGWCC 3 cut(s) 232, 383, 496
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 4 cut(s) 6, 80, 513, 553
EgeI GGCGCC 1 cut(s) 551
EheI GGCGCC 1 cut(s) 551
ErhI CCWWGG 4 cut(s) 6, 80, 513, 553
FaeI CATG 5 cut(s) 10, 84, 112, 321, 376
FaiI YATR 8 cut(s) 8, 82, 110, 319, 374, 633, 638, 640
FaqI GGGAC 2 cut(s) 32, 445
FatI CATG 5 cut(s) 6, 80, 108, 317, 372
FauI CCCGC 1 cut(s) 266
FauNDI CATATG 1 cut(s) 638
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 262, 265, 366
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 3 cut(s) 262, 265, 366
FspBI CTAG 1 cut(s) 405
GlaI GCGC 2 cut(s) 291, 551
GluI GCNGC 3 cut(s) 262, 265, 366
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 2 cut(s) 5, 564
HapII CCGG 4 cut(s) 206, 270, 357, 618
HhaI GCGC 2 cut(s) 292, 552
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 5 cut(s) 10, 84, 112, 321, 376
Hin6I GCGC 2 cut(s) 290, 550
HinP1I GCGC 2 cut(s) 290, 550
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 213, 323
HpaII CCGG 4 cut(s) 206, 270, 357, 618
HphI GGTGA 5 cut(s) 22, 208, 318, 550, 607
Hpy166II GTNNAC 4 cut(s) 526, 541, 595, 615
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 4 cut(s) 526, 541, 595, 615
HpyAV CCTTC 2 cut(s) 115, 529
HpyCH4III ACNGT 2 cut(s) 68, 181
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 118, 127, 270
HpyF3I CTNAG 3 cut(s) 43, 440, 531
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 5 cut(s) 10, 84, 112, 321, 376
HspAI GCGC 2 cut(s) 290, 550
KasI GGCGCC 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 2 cut(s) 252, 312
LmnI GCTCC 3 cut(s) 208, 334, 362
Lsp1109I GCAGC 2 cut(s) 276, 377
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 181, 324
MalI GATC 2 cut(s) 254, 314
MboI GATC 2 cut(s) 252, 312
MboII GAAGA 4 cut(s) 19, 182, 311, 598
MfeI CAATTG 1 cut(s) 600
MlsI TGGCCA 2 cut(s) 5, 564
MluCI AATT 1 cut(s) 600
MluNI TGGCCA 2 cut(s) 5, 564
Mly113I GGCGCC 1 cut(s) 550
MlyI GAGTC 1 cut(s) 332
Mox20I TGGCCA 2 cut(s) 5, 564
MscI TGGCCA 2 cut(s) 5, 564
MseI TTAA 2 cut(s) 156, 459
Msp20I TGGCCA 2 cut(s) 5, 564
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 4 cut(s) 206, 270, 357, 618
MspR9I CCNGG 1 cut(s) 546
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 17, 118, 127, 270
NarI GGCGCC 1 cut(s) 550
NcoI CCATGG 2 cut(s) 6, 80
NdeI CATATG 1 cut(s) 638
NdeII GATC 2 cut(s) 252, 312
NlaIII CATG 5 cut(s) 10, 84, 112, 321, 376
NlaIV GGNNCC 4 cut(s) 204, 234, 384, 551
NmuCI GTSAC 2 cut(s) 181, 324
PagI TCATGA 1 cut(s) 372
PasI CCCWGGG 1 cut(s) 545
PfeI GAWTC 1 cut(s) 213
PkrI GCNGC 3 cut(s) 263, 266, 367
PleI GAGTC 1 cut(s) 331
PluTI GGCGCC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 4 cut(s) 204, 234, 384, 551
PspPI GGNCC 3 cut(s) 232, 383, 496
PspPPI RGGWCCY 1 cut(s) 383
RsaI GTAC 4 cut(s) 70, 452, 464, 527
RsaNI GTAC 4 cut(s) 69, 451, 463, 526
SaqAI TTAA 2 cut(s) 156, 459
SatI GCNGC 3 cut(s) 262, 265, 366
Sau3AI GATC 2 cut(s) 252, 312
Sau96I GGNCC 3 cut(s) 232, 383, 496
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 546
SetI ASST 8 cut(s) 132, 231, 312, 446, 498, 540, 578, 609
SfaNI GCATC 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 551
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 3 cut(s) 232, 383, 496
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 600
SsiI CCGC 6 cut(s) 60, 75, 165, 261, 273, 360
SspDI GGCGCC 1 cut(s) 549
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 544
StyI CCWWGG 4 cut(s) 6, 80, 513, 553
TaaI ACNGT 2 cut(s) 68, 181
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 578
TasI AATT 1 cut(s) 600
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 156, 459
Tru9I TTAA 2 cut(s) 156, 459
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 181, 324
TseI GCWGC 2 cut(s) 264, 365
Tsp45I GTSAC 2 cut(s) 181, 324
TspDTI ATGAA 1 cut(s) 97
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 232, 383, 496
VspI ATTAAT 1 cut(s) 156
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.