AT4G04640

ATP synthase gamma chain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015012
Physical Location & Seq
Reverse (-)
2350498 .. 2352025
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04640.1

Sequence Viewer

Length: 1122 bp
ATGGCTTGCTCTAATCTAACAACAATGTGGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCATTCCGATCTGTTCTCAAGTGCCCAACTAACACTTCCTCACCTCCTTCACGAGCTTCCTCTGTTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACACTCAAAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAGAAGCTGTTGTCAATGGACGACCATTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCAACGAACAGCTTCAAACCGATGATGTCGATGTTCCCTTAACCAAAGTCAGACCGGTTAAGAAAGTAGCTCTCGTTGTCGTCACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCATCATTAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTAGGTCTTGAATACACAGTCATTAGCGTGGGCAAGAAGGGAAATTCTTATTTCCTCCGTCGCCCGTACATCCCCGTCGACAAATACCTAGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCTCTCTGTTTATAAGTGAAGAAGTCGACAAAGTCGAGCTCTTGTACACAAAGTTTGTCTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTACTGCCTTTATCACCTAAAGGAGAGATCTGTGACATTAATGGAACCTGTGTGGATGCTGCGGAAGATGAGTTTTTCAGGTTAACGACAAAAGAAGGGAAATTGACAGTTGAAAGAGAGACTTTTAGGACACCAACAGCTGATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGTATCTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTCAAGAAATCGCTTTCGATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTGTTGCTGGAGCTAATGCACAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009767 GO:0009772 GO:0009941 GO:0009987 GO:0015672 GO:0015979 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019684 GO:0019693 GO:0022603 GO:0022900 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map00190 map00195 map01100 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

373

Amino Acids

40.91

Weight (kDa)

8.14

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 52 - 371 1.5e-92 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04640
fragaria_vesca FvH4_3g02060
malus_domestica MD05G1347300.v1.1 MD10G1321500.v1.1
prunus_persica Prupe.4G020800_v2.0.a1
pyrus_communis pycom05g31500 pycom10g27220
rosa_chinensis RchiOBHm_Chr5g0002961
rosa_laevigata RLG00000031074
rosa_multiflora Rmu_sc0013603.1_g000002
rosa_rugosa Rorug04G0400900
rosa_samantha Rh5AG023900 Rh5BG026600 Rh5CG026700 Rh5DG025200
rosa_wichuraiana Rw5G002260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 635
AccI GTMKAC 2 cut(s) 555, 648
AciI CCGC 1 cut(s) 776
AclWI GGATC 2 cut(s) 700, 1029
AcsI RAATTY 1 cut(s) 520
AfaI GTAC 2 cut(s) 545, 668
AgeI ACCGGT 2 cut(s) 367, 398
AgsI TTSAA 5 cut(s) 299, 329, 427, 488, 827
AjuI GAANNNNNNNTTGG 4 cut(s) 91, 123, 141, 173
AloI GAACNNNNNNTCC 2 cut(s) 690, 722
Alw21I GWGCWC 3 cut(s) 168, 253, 663
Alw26I GTCTC 4 cut(s) 159, 165, 685, 827
AlwI GGATC 2 cut(s) 700, 1029
ApeKI GCWGC 4 cut(s) 230, 233, 773, 977
ApoI RAATTY 1 cut(s) 520
AseI ATTAAT 1 cut(s) 753
AsiGI ACCGGT 2 cut(s) 367, 398
Asp700I GAANNNNTTC 1 cut(s) 324
AsuHPI GGTGA 6 cut(s) 105, 132, 199, 388, 413, 720
BaeGI GKGCMC 1 cut(s) 98
BanII GRGCYC 3 cut(s) 168, 253, 663
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 613
Bbv12I GWGCWC 3 cut(s) 168, 253, 663
BbvI GCAGC 4 cut(s) 217, 245, 760, 989
BccI CCATC 2 cut(s) 52, 1036
BceAI ACGGC 1 cut(s) 603
BcoDI GTCTC 4 cut(s) 159, 165, 685, 827
BfaI CTAG 5 cut(s) 293, 479, 566, 966, 981
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 741
BisI GCNGC 4 cut(s) 231, 234, 774, 978
BlsI GCNGC 4 cut(s) 232, 235, 775, 979
BmiI GGNNCC 1 cut(s) 760
BmsI GCATC 3 cut(s) 760, 895, 1025
BpiI GAAGAC 1 cut(s) 613
BpmI CTGGAG 2 cut(s) 1098, 1122
BpuEI CTTGAG 5 cut(s) 74, 237, 585, 1010, 1109
Bsa29I ATCGAT 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 367, 398
Bse118I RCCGGY 2 cut(s) 367, 398
Bse1I ACTGG 1 cut(s) 1081
Bse3DI GCAATG 1 cut(s) 999
BseCI ATCGAT 1 cut(s) 180
BseGI GGATG 2 cut(s) 546, 775
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 2 cut(s) 181, 297
BseNI ACTGG 1 cut(s) 1081
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 4 cut(s) 217, 245, 760, 989
BshTI ACCGGT 2 cut(s) 367, 398
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 3 cut(s) 168, 253, 663
BsiSI CCGG 3 cut(s) 368, 399, 573
BsmAI GTCTC 4 cut(s) 159, 165, 685, 827
BsmBI CGTCTC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 4 cut(s) 98, 168, 253, 663
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
BspACI CCGC 1 cut(s) 776
BspCNI CTCAG 2 cut(s) 180, 296
BspDI ATCGAT 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 760
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 2 cut(s) 700, 1029
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 999
BsrFI RCCGGY 2 cut(s) 367, 398
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 1081
BssAI RCCGGY 2 cut(s) 367, 398
BssMI GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 4 cut(s) 176, 496, 823, 932
Bst6I CTCTTC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 7, 975
BstDEI CTNAG 4 cut(s) 167, 283, 941, 1068
BstF5I GGATG 2 cut(s) 546, 775
BstKTI GATC 7 cut(s) 83, 207, 406, 708, 744, 870, 1024
BstMAI GTCTC 4 cut(s) 159, 165, 685, 827
BstMBI GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 257, 596, 871, 880
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 217, 245, 760, 989
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 2 cut(s) 741, 1021
BstYI RGATCY 2 cut(s) 741, 1021
Bsu15I ATCGAT 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 180
BtsCI GGATG 2 cut(s) 546, 775
Cac8I GCNNGC 2 cut(s) 7, 975
Cfr10I RCCGGY 2 cut(s) 367, 398
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 2 cut(s) 141, 1049
Csp6I GTAC 2 cut(s) 544, 667
CspAI ACCGGT 2 cut(s) 367, 398
CviQI GTAC 2 cut(s) 544, 667
DdeI CTNAG 4 cut(s) 167, 283, 941, 1068
DpnI GATC 7 cut(s) 82, 206, 405, 707, 743, 869, 1023
DpnII GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 3 cut(s) 166, 251, 661
Eco24I GRGCYC 3 cut(s) 168, 253, 663
Eco31I GGTCTC 1 cut(s) 165
Eco53kI GAGCTC 3 cut(s) 166, 251, 661
EcoICRI GAGCTC 3 cut(s) 166, 251, 661
EcoT22I ATGCAT 1 cut(s) 1018
EcoT38I GRGCYC 3 cut(s) 168, 253, 663
Esp3I CGTCTC 1 cut(s) 159
FaiI YATR 4 cut(s) 218, 415, 635, 1050
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 820, 852
FblI GTMKAC 2 cut(s) 555, 648
Fnu4HI GCNGC 4 cut(s) 231, 234, 774, 978
FokI GGATG 2 cut(s) 533, 782
FriOI GRGCYC 3 cut(s) 168, 253, 663
Fsp4HI GCNGC 4 cut(s) 231, 234, 774, 978
FspBI CTAG 5 cut(s) 293, 479, 566, 966, 981
GluI GCNGC 4 cut(s) 231, 234, 774, 978
GsuI CTGGAG 2 cut(s) 1098, 1122
HapII CCGG 3 cut(s) 368, 399, 573
HgaI GACGC 2 cut(s) 141, 1049
HincII GTYRAC 3 cut(s) 556, 649, 798
HindII GTYRAC 3 cut(s) 556, 649, 798
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 8 cut(s) 59, 182, 423, 459, 898, 937, 956, 1084
HpaI GTTAAC 1 cut(s) 798
HpaII CCGG 3 cut(s) 368, 399, 573
HphI GGTGA 6 cut(s) 105, 132, 199, 388, 413, 720
Hpy166II GTNNAC 4 cut(s) 556, 649, 669, 798
Hpy188I TCNGA 9 cut(s) 80, 170, 286, 365, 697, 897, 936, 1009, 1021
Hpy188III TCNNGA 8 cut(s) 123, 161, 244, 254, 485, 902, 1027, 1088
Hpy8I GTNNAC 4 cut(s) 556, 649, 669, 798
Hpy99I CGWCG 2 cut(s) 540, 557
HpyAV CCTTC 3 cut(s) 129, 508, 803
HpyCH4III ACNGT 4 cut(s) 176, 496, 823, 932
HpyCH4V TGCA 6 cut(s) 233, 874, 977, 992, 1016, 1112
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 596, 871, 880
HpyF3I CTNAG 4 cut(s) 167, 283, 941, 1068
KspAI GTTAAC 1 cut(s) 798
Kzo9I GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
LmnI GCTCC 1 cut(s) 1103
Lsp1109I GCAGC 4 cut(s) 217, 245, 760, 989
LweI GCATC 3 cut(s) 760, 895, 1025
MaeI CTAG 5 cut(s) 293, 479, 566, 966, 981
MaeIII GTNAC 2 cut(s) 394, 746
MalI GATC 7 cut(s) 82, 206, 405, 707, 743, 869, 1023
MboI GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
MboII GAAGA 5 cut(s) 57, 149, 613, 653, 791
MflI RGATCY 2 cut(s) 741, 1021
MhlI GDGCHC 4 cut(s) 98, 168, 253, 663
MluCI AATT 4 cut(s) 430, 520, 815, 875
MlyI GAGTC 1 cut(s) 965
MnlI CCTC 6 cut(s) 121, 126, 142, 445, 542, 927
Mph1103I ATGCAT 1 cut(s) 1018
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 7 cut(s) 353, 372, 441, 471, 753, 797, 927
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 3 cut(s) 368, 399, 573
MwoI GCNNNNNNNGC 4 cut(s) 257, 596, 871, 880
NdeII GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
NlaIV GGNNCC 1 cut(s) 760
NmuCI GTSAC 2 cut(s) 394, 746
NsiI ATGCAT 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 7 cut(s) 59, 182, 423, 459, 898, 937, 1084
PflFI GACNNNGTC 1 cut(s) 653
PinAI ACCGGT 2 cut(s) 367, 398
PkrI GCNGC 4 cut(s) 232, 235, 775, 979
PleI GAGTC 1 cut(s) 964
PpsI GAGTC 1 cut(s) 964
PshBI ATTAAT 1 cut(s) 753
PsiI TTATAA 1 cut(s) 635
Psp124BI GAGCTC 3 cut(s) 168, 253, 663
PspN4I GGNNCC 1 cut(s) 760
PsrI GAACNNNNNNTAC 2 cut(s) 568, 600
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 2 cut(s) 741, 1021
PsyI GACNNNGTC 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 2 cut(s) 545, 668
RsaNI GTAC 2 cut(s) 544, 667
RseI CAYNNNNRTG 1 cut(s) 503
SacI GAGCTC 3 cut(s) 168, 253, 663
SalI GTCGAC 2 cut(s) 554, 647
SaqAI TTAA 7 cut(s) 353, 372, 441, 471, 753, 797, 927
SatI GCNGC 4 cut(s) 231, 234, 774, 978
Sau3AI GATC 7 cut(s) 80, 204, 403, 705, 741, 867, 1021
SchI GAGTC 1 cut(s) 965
SduI GDGCHC 4 cut(s) 98, 168, 253, 663
SfaNI GCATC 3 cut(s) 760, 895, 1025
SfcI CTRYAG 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 5 cut(s) 89, 252, 600, 1025, 1088
SmoI CTYRAG 5 cut(s) 89, 252, 600, 1025, 1088
Sse9I AATT 4 cut(s) 430, 520, 815, 875
SsiI CCGC 1 cut(s) 776
SspMI CTAG 5 cut(s) 293, 479, 566, 966, 981
SstI GAGCTC 3 cut(s) 168, 253, 663
TaaI ACNGT 4 cut(s) 176, 496, 823, 932
TaqI TCGA 7 cut(s) 180, 342, 555, 648, 657, 879, 1040
TasI AATT 4 cut(s) 430, 520, 815, 875
TatI WGTACW 1 cut(s) 666
TfiI GAWTC 7 cut(s) 59, 182, 423, 459, 898, 937, 1084
Tru1I TTAA 7 cut(s) 353, 372, 441, 471, 753, 797, 927
Tru9I TTAA 7 cut(s) 353, 372, 441, 471, 753, 797, 927
TseFI GTSAC 2 cut(s) 394, 746
TseI GCWGC 4 cut(s) 230, 233, 773, 977
Tsp45I GTSAC 2 cut(s) 394, 746
TspDTI ATGAA 4 cut(s) 24, 51, 233, 424
TspGWI ACGGA 1 cut(s) 524
Tth111I GACNNNGTC 1 cut(s) 653
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 1 cut(s) 520
XmiI GTMKAC 2 cut(s) 555, 648
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 5 cut(s) 293, 479, 566, 966, 981
Zsp2I ATGCAT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.