Rh5AG023900

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015012
Physical Location & Seq
Reverse (-)
1652200 .. 1653750
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG023900.1

Sequence Viewer

Length: 1122 bp
ATGTCTTGTTCAAATGTGACAATGTGGGTGTCCTCTAAACCTTCCCTCACTGACACCTCCTCCCTCTCCTTCCGCTCTTGCCTGAGCCCTTTCCAGCTTCCTTCTCAGAACTCACTCACCGGCAACCCCTCCAGATCGTCCACCGTGACCTGTGGCCTCCGTGAGCTTCGTGATCGTATTGCGTCTGTATCAAACACCAAGAAGATCACCGAAGCCATGAAGCTTGTGGCCGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTAAATGGAAGACCCTTTTCGCAAACTCTAGTGGAAGTTCTTTACAACATCAATGAGCAGCTCCAAGTAGAAGACATAGATTCACCTCTCACCAATGTTAGACCTGTCAAGAAGGTCGCTCTTGTTGTTGTGACGGGTGATCGTGGTCTTTGCGGAGGTTTCAACAATCAGATCATTAAAAAAGCCGAGAGGAGGATCGCTGAGTTGAAGGCTCTTGGTCTTGAGTATACTATTGTTAGTGTTGGCAAGAAGGGTAACTCTTATTTTCTACGTCGGCCTTATATTCCGGTTGATAAGTTCATTGAAGGAACCAATCTCCCTACCGCCAAGGAAGCACAGGCCATAGCCGATGATGTCTTCTCTCTTTTTGTTAGTGAGGAAGTCGACAAGGTGGAGCTTCTGTACACGAAATTCGTGTCATTGGTGAAGTCTGATCCTGTGATTCACACCTTGTTGCCACTCTCACCGAAAGGAGAGATTTGTGACATTAATGGCACCTGTGTAGATGCTGCTGAAGATGAGTTCTTCCGGTTGACAACTAAAGAAGGGAAACTGACTGTAGAGAGAGATGCAACCACTACACAAACAGTGGATTTCTCTCCGATTCTGCAGTTTGAGCAGGATCCGGTTCAGATTCTCGACGCATTGCTGCCTTTGTACCTTAACAGTCAAGTTTTGAGGGCATTGCAGGAGTCATTGGCCAGTGAGCTAGCTGCTAGGATGACTGCTATGAGCAATGCGTCCGATAATGCAGTCGAGTTGAAGAAGAGCTTGTCGAGGGTTTACAACAGGCAGCGCCAGGCGAAAATCACCGGGGAGATCTTGGAGATTGTTTCTGGTGCCAATGCCTTAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009767 GO:0009772 GO:0009941 GO:0009987 GO:0015672 GO:0015979 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019684 GO:0019693 GO:0022900 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050790 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map00190 map00195 map01100 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

373

Amino Acids

40.98

Weight (kDa)

7.52

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 53 - 372 1.9e-93 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04640
fragaria_vesca FvH4_3g02060
malus_domestica MD05G1347300.v1.1 MD10G1321500.v1.1
prunus_persica Prupe.4G020800_v2.0.a1
pyrus_communis pycom05g31500 pycom10g27220
rosa_chinensis RchiOBHm_Chr5g0002961
rosa_laevigata RLG00000031074
rosa_multiflora Rmu_sc0013603.1_g000002
rosa_rugosa Rorug04G0400900
rosa_samantha Rh5AG023900 Rh5BG026600 Rh5CG026700 Rh5DG025200
rosa_wichuraiana Rw5G002260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 758, 1103
AccBSI CCGCTC 1 cut(s) 75
AccI GTMKAC 2 cut(s) 491, 648
AciI CCGC 5 cut(s) 73, 231, 244, 417, 588
AclWI GGATC 4 cut(s) 467, 692, 881, 894
AcoI YGGCCR 2 cut(s) 228, 963
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 2 cut(s) 668, 923
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 5 cut(s) 12, 427, 472, 569, 1027
AjnI CCWGG 1 cut(s) 1062
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 4 cut(s) 467, 692, 881, 894
AoxI GGCC 5 cut(s) 154, 228, 539, 603, 963
ApeKI GCWGC 6 cut(s) 233, 322, 773, 913, 977, 1057
ApoI RAATTY 1 cut(s) 674
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AseI ATTAAT 1 cut(s) 753
AspLEI GCGC 1 cut(s) 1062
AsuC2I CCSGG 1 cut(s) 1078
AsuHPI GGTGA 8 cut(s) 109, 199, 339, 346, 413, 700, 720, 1066
AsuNHI GCTAGC 1 cut(s) 973
BalI TGGCCA 1 cut(s) 965
BamHI GGATCC 1 cut(s) 886
BanI GGYRCC 2 cut(s) 758, 1103
BanII GRGCYC 2 cut(s) 89, 253
BbsI GAAGAC 3 cut(s) 280, 342, 613
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 6 cut(s) 220, 334, 760, 900, 964, 1069
BciT130I CCWGG 1 cut(s) 1064
BcnI CCSGG 1 cut(s) 1078
BfaI CTAG 3 cut(s) 293, 974, 981
BfmI CTRYAG 2 cut(s) 822, 872
BfoI RGCGCY 1 cut(s) 1063
BglII AGATCT 1 cut(s) 1083
BisI GCNGC 7 cut(s) 231, 234, 323, 774, 914, 978, 1058
BlsI GCNGC 7 cut(s) 232, 235, 324, 775, 915, 979, 1059
Bme1390I CCNGG 2 cut(s) 1064, 1078
BmiI GGNNCC 4 cut(s) 574, 760, 888, 1105
BmrFI CCNGG 2 cut(s) 1064, 1078
BmsI GCATC 2 cut(s) 760, 823
BmtI GCTAGC 1 cut(s) 977
BpiI GAAGAC 3 cut(s) 280, 342, 613
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 237, 506
BpuMI CCSGG 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 591, 1077
BsaWI WCCGGW 3 cut(s) 550, 792, 889
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 650, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 966
Bse3DI GCAATG 3 cut(s) 908, 947, 1006
BseBI CCWGG 1 cut(s) 1064
BseDI CCNNGG 2 cut(s) 591, 1077
BseGI GGATG 1 cut(s) 990
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 3 cut(s) 908, 947, 1006
BseMII CTCAG 3 cut(s) 74, 119, 456
BseNI ACTGG 1 cut(s) 966
BseRI GAGGAG 2 cut(s) 49, 469
BseXI GCAGC 6 cut(s) 220, 334, 760, 900, 964, 1069
BshFI GGCC 5 cut(s) 156, 230, 541, 605, 965
BshNI GGYRCC 2 cut(s) 758, 1103
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 5 cut(s) 120, 551, 793, 890, 1077
BslI CCNNNNNNNGG 1 cut(s) 456
BsnI GGCC 5 cut(s) 156, 230, 541, 605, 965
Bsp1286I GDGCHC 2 cut(s) 89, 253
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
BspACI CCGC 5 cut(s) 73, 231, 244, 417, 588
BspANI GGCC 5 cut(s) 156, 230, 541, 605, 965
BspCNI CTCAG 3 cut(s) 75, 118, 457
BspLI GGNNCC 4 cut(s) 574, 760, 888, 1105
BspMAI CTGCAG 1 cut(s) 876
BspOI GCTAGC 1 cut(s) 977
BspPI GGATC 4 cut(s) 467, 692, 881, 894
BspQI GCTCTTC 1 cut(s) 1025
BspT107I GGYRCC 2 cut(s) 758, 1103
BsrBI CCGCTC 1 cut(s) 75
BsrDI GCAATG 3 cut(s) 908, 947, 1006
BsrFI RCCGGY 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 966
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 591, 1077
BssMI GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
BssNAI GTATAC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 591
Bst1107I GTATAC 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 1064
Bst4CI ACNGT 4 cut(s) 145, 823, 853, 932
Bst6I CTCTTC 1 cut(s) 1025
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 3 cut(s) 83, 105, 465
BstF5I GGATG 1 cut(s) 990
BstH2I RGCGCY 1 cut(s) 1063
BstHHI GCGC 1 cut(s) 1062
BstKTI GATC 9 cut(s) 137, 175, 207, 406, 438, 462, 700, 889, 1086
BstMBI GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
BstMWI GCNNNNNNNGC 3 cut(s) 257, 596, 880
BstNI CCWGG 1 cut(s) 1064
BstSCI CCNGG 2 cut(s) 1062, 1076
BstSFI CTRYAG 2 cut(s) 822, 872
BstV1I GCAGC 6 cut(s) 220, 334, 760, 900, 964, 1069
BstV2I GAAGAC 3 cut(s) 280, 342, 613
BstX2I RGATCY 2 cut(s) 886, 1083
BstYI RGATCY 2 cut(s) 886, 1083
BstZ17I GTATAC 1 cut(s) 492
BsuRI GGCC 5 cut(s) 156, 230, 541, 605, 965
BtsCI GGATG 1 cut(s) 990
BtsIMutI CAGTG 3 cut(s) 48, 858, 973
Cac8I GCNNGC 1 cut(s) 975
CfoI GCGC 1 cut(s) 1062
Cfr10I RCCGGY 1 cut(s) 119
CseI GACGC 3 cut(s) 171, 914, 993
Csp6I GTAC 2 cut(s) 667, 922
CviAII CATG 1 cut(s) 217
CviQI GTAC 2 cut(s) 667, 922
DdeI CTNAG 3 cut(s) 83, 105, 465
DpnI GATC 9 cut(s) 136, 174, 206, 405, 437, 461, 699, 888, 1085
DpnII GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
EaeI YGGCCR 2 cut(s) 228, 963
Eam1104I CTCTTC 1 cut(s) 1025
EarI CTCTTC 1 cut(s) 1025
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 2 cut(s) 89, 253
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 798
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 1062
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 2 cut(s) 89, 253
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 1 cut(s) 220
FaiI YATR 6 cut(s) 218, 341, 492, 546, 608, 995
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FatI CATG 1 cut(s) 216
FblI GTMKAC 2 cut(s) 491, 648
Fnu4HI GCNGC 7 cut(s) 231, 234, 323, 774, 914, 978, 1058
FokI GGATG 1 cut(s) 997
FriOI GRGCYC 2 cut(s) 89, 253
Fsp4HI GCNGC 7 cut(s) 231, 234, 323, 774, 914, 978, 1058
FspBI CTAG 3 cut(s) 293, 974, 981
GlaI GCGC 1 cut(s) 1061
GluI GCNGC 7 cut(s) 231, 234, 323, 774, 914, 978, 1058
GsuI CTGGAG 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 1063
HaeIII GGCC 5 cut(s) 156, 230, 541, 605, 965
HapII CCGG 5 cut(s) 120, 551, 793, 890, 1077
HgaI GACGC 3 cut(s) 171, 914, 993
HhaI GCGC 1 cut(s) 1062
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HincII GTYRAC 2 cut(s) 649, 798
HindII GTYRAC 2 cut(s) 649, 798
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 344, 706, 868, 898, 956
HpaII CCGG 5 cut(s) 120, 551, 793, 890, 1077
HphI GGTGA 8 cut(s) 109, 199, 339, 346, 413, 700, 720, 1066
Hpy166II GTNNAC 6 cut(s) 141, 492, 649, 669, 798, 1048
Hpy188I TCNGA 6 cut(s) 108, 435, 697, 867, 897, 1009
Hpy188III TCNNGA 6 cut(s) 132, 170, 254, 373, 485, 902
Hpy8I GTNNAC 6 cut(s) 141, 492, 649, 669, 798, 1048
Hpy99I CGWCG 2 cut(s) 540, 908
HpyAV CCTTC 8 cut(s) 51, 79, 111, 370, 466, 508, 563, 803
HpyCH4III ACNGT 4 cut(s) 145, 823, 853, 932
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 4 cut(s) 836, 874, 952, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 596, 880
HpyF3I CTNAG 3 cut(s) 83, 105, 465
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 1060
Kzo9I GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
LguI GCTCTTC 1 cut(s) 1025
LmnI GCTCC 2 cut(s) 330, 658
Lsp1109I GCAGC 6 cut(s) 220, 334, 760, 900, 964, 1069
LweI GCATC 2 cut(s) 760, 823
MaeI CTAG 3 cut(s) 293, 974, 981
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 5 cut(s) 16, 145, 394, 518, 746
MalI GATC 9 cut(s) 136, 174, 206, 405, 437, 461, 699, 888, 1085
MbiI CCGCTC 1 cut(s) 75
MboI GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
MboII GAAGA 8 cut(s) 214, 285, 347, 613, 781, 791, 1039, 1042
MflI RGATCY 2 cut(s) 886, 1083
MhlI GDGCHC 2 cut(s) 89, 253
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 1 cut(s) 965
Mox20I TGGCCA 1 cut(s) 965
MscI TGGCCA 1 cut(s) 965
MseI TTAA 4 cut(s) 441, 753, 927, 1115
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 5 cut(s) 120, 551, 793, 890, 1077
MspR9I CCNGG 2 cut(s) 1064, 1078
MvaI CCWGG 1 cut(s) 1064
MwoI GCNNNNNNNGC 3 cut(s) 257, 596, 880
NciI CCSGG 1 cut(s) 1078
NdeII GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
NheI GCTAGC 1 cut(s) 973
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 4 cut(s) 574, 760, 888, 1105
NmeAIII GCCGAG 1 cut(s) 475
NmuCI GTSAC 4 cut(s) 16, 145, 394, 746
PciSI GCTCTTC 1 cut(s) 1025
PfeI GAWTC 4 cut(s) 344, 706, 868, 898
PkrI GCNGC 7 cut(s) 232, 235, 324, 775, 915, 979, 1059
PleI GAGTC 1 cut(s) 964
PpsI GAGTC 1 cut(s) 964
PshBI ATTAAT 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 1062
PspGI CCWGG 1 cut(s) 1062
PspN4I GGNNCC 4 cut(s) 574, 760, 888, 1105
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 2 cut(s) 886, 1083
RsaI GTAC 2 cut(s) 668, 923
RsaNI GTAC 2 cut(s) 667, 922
SacI GAGCTC 1 cut(s) 253
SalI GTCGAC 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 1025
SaqAI TTAA 4 cut(s) 441, 753, 927, 1115
SatI GCNGC 7 cut(s) 231, 234, 323, 774, 914, 978, 1058
Sau3AI GATC 9 cut(s) 134, 172, 204, 403, 435, 459, 697, 886, 1083
SchI GAGTC 1 cut(s) 965
ScrFI CCNGG 2 cut(s) 1064, 1078
SduI GDGCHC 2 cut(s) 89, 253
SfaNI GCATC 2 cut(s) 760, 823
SfcI CTRYAG 2 cut(s) 822, 872
SmlI CTYRAG 2 cut(s) 252, 485
SmoI CTYRAG 2 cut(s) 252, 485
Sse9I AATT 1 cut(s) 674
SsiI CCGC 5 cut(s) 73, 231, 244, 417, 588
SspMI CTAG 3 cut(s) 293, 974, 981
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 1062, 1076
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 4 cut(s) 145, 823, 853, 932
TaiI ACGT 1 cut(s) 538
TaqI TCGA 4 cut(s) 648, 903, 1020, 1040
TasI AATT 1 cut(s) 674
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 344, 706, 868, 898
Tru1I TTAA 4 cut(s) 441, 753, 927, 1115
Tru9I TTAA 4 cut(s) 441, 753, 927, 1115
TscAI CASTG 3 cut(s) 55, 858, 973
TseFI GTSAC 4 cut(s) 16, 145, 394, 746
TseI GCWGC 6 cut(s) 233, 322, 773, 913, 977, 1057
Tsp45I GTSAC 4 cut(s) 16, 145, 394, 746
TspDTI ATGAA 2 cut(s) 233, 553
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 3 cut(s) 55, 858, 973
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 491, 648
XspI CTAG 3 cut(s) 293, 974, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.