MD05G1347300.v1.1

ATP synthase gamma chain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
46619632 .. 46620756
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1347300.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGTCTTGCTCAAATTTGACAATGTGGGCGTCCTCAACGCCCTCACTTTCTGACACCTCCGCCCTCTCCTGCCGCTCCTTCATCGCCCCTCTTCAGCTTCCTTCCCAAAACTCTCTCCCCGCCTCGCGATCATCCTCCGTGACACCGGTTCAATGCGGTCTTCGCGAGCTTCGTGAGCGTATTTCATCAGTGAAGAACACGCAGAAGATCACTGAGGCTATGAAGCTTGTGGCAGCCGCCAAAGTCCGCCGAGCTCAAGAGGCTGTCGTTAATGGCAGACCCTTTTCGGAAACCCTAGTCGAAGTTCTTTACAACATCAATGAGCAGCTCCAAGTGGAAGATATTGATGCTCCTCTGACCAAAGTTAGGCCTGTCAAGAAAGTTGCTCTCGTTGTCATAACCGGGGATCGCGGTCTTTGCGGAGGTTTCAACAATATGATCATCAAAAAAGCCGAGAGAAGAATTGCCGAATTGAAGGCTCTTGGTCTCGAATTCACGATCATCAGTGTCGGTAAAAAGGGTAACTCGTATTTCCTCCGCCGGCCATACATTCCGGTTGATAAGTTCCTCGAGGGAACCAACCTCCCAACTGCCAAAGAAGCACAGGCCATCGCGGACGATGTTTTCTCCCTTTTCGTAAGTGAAGAGGTCGACAAAGTCGAGCTTTTGTACACGAAATTTGTGTCGTTGGTTAAATCCGACCCTGTGATTCACACCCTGCTTCCACTCTCGCCGAAAGGAGAGATTTGTGACATCAATGGCGTTTGTGTGGACGCCGCGGATGATGAGTTCTTCAGGCTGACAACAAAAGAAGGGAAATTGACAGTGGAGAGAGATATCATCAAGACACAGACCGTGGATTTCACGCCGGTTTTGCAGTTTGAGCAGGATCCGGTTCAGATTCTCGACGCTTTGCTGCCGTTATACCTCAACAGTCAGCTTTTGAGGGCATTGCAGGAGTCTCTAGCCAGTGAGCTTGCTGCTAGGATGACTGCTATGAGCAATGCAACTGATAACGCGGTGGAGTTGAAGAAGACCTTGTCGCAGACCTACAACCGGCAGCGCCAGGCAAAAATCACCGGAGAGATTTTAGAGATTGTTTCGGGTGCCAACGCTTTAGTCTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

375

Amino Acids

41.13

Weight (kDa)

6.68

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 54 - 373 1.1e-93 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04640
fragaria_vesca FvH4_3g02060
malus_domestica MD05G1347300.v1.1 MD10G1321500.v1.1
prunus_persica Prupe.4G020800_v2.0.a1
pyrus_communis pycom05g31500 pycom10g27220
rosa_chinensis RchiOBHm_Chr5g0002961
rosa_laevigata RLG00000031074
rosa_multiflora Rmu_sc0013603.1_g000002
rosa_rugosa Rorug04G0400900
rosa_samantha Rh5AG023900 Rh5BG026600 Rh5CG026700 Rh5DG025200
rosa_wichuraiana Rw5G002260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 1106
AccBSI CCGCTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 651
AccII CGCG 6 cut(s) 127, 165, 411, 614, 779, 1019
AclWI GGATC 3 cut(s) 414, 884, 897
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 3 cut(s) 13, 491, 677
AcuI CTGAAG 2 cut(s) 77, 778
AcyI GRCGYC 2 cut(s) 29, 774
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 2 cut(s) 366, 1056
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 152, 430, 475, 1030
AjnI CCWGG 1 cut(s) 1065
AloI GAACNNNNNNTCC 2 cut(s) 773, 805
AluBI AGCT 8 cut(s) 97, 169, 226, 254, 328, 664, 940, 976
AluI AGCT 8 cut(s) 97, 169, 226, 254, 328, 664, 940, 976
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 491, 966
AlwI GGATC 3 cut(s) 414, 884, 897
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 3 cut(s) 368, 542, 606
ApeKI GCWGC 5 cut(s) 233, 325, 916, 980, 1060
ApoI RAATTY 3 cut(s) 13, 491, 677
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AsiGI ACCGGT 1 cut(s) 145
AspLEI GCGC 1 cut(s) 1065
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 1069
AvaI CYCGRG 1 cut(s) 569
BamHI GGATCC 1 cut(s) 889
BanI GGYRCC 1 cut(s) 1106
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 152, 1040
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 5 cut(s) 245, 337, 903, 967, 1072
BccI CCATC 1 cut(s) 617
BceAI ACGGC 1 cut(s) 904
BciT130I CCWGG 1 cut(s) 1067
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 491, 966
BfaI CTAG 4 cut(s) 296, 965, 984, 1123
BfoI RGCGCY 1 cut(s) 1066
BisI GCNGC 8 cut(s) 73, 234, 237, 326, 777, 917, 981, 1061
BlsI GCNGC 8 cut(s) 74, 235, 238, 327, 778, 918, 982, 1062
Bme1390I CCNGG 2 cut(s) 403, 1067
BmeT110I CYCGRG 1 cut(s) 569
BmiI GGNNCC 3 cut(s) 577, 891, 1108
BmrFI CCNGG 2 cut(s) 403, 1067
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 2 cut(s) 152, 1040
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 403
BsaHI GRCGYC 2 cut(s) 29, 774
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 402, 777, 855
BsaWI WCCGGW 4 cut(s) 145, 553, 892, 1079
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 1056
Bse118I RCCGGY 4 cut(s) 145, 540, 868, 1056
Bse1I ACTGG 1 cut(s) 969
Bse3DI GCAATG 2 cut(s) 950, 1009
BseBI CCWGG 1 cut(s) 1067
BseDI CCNNGG 3 cut(s) 402, 777, 855
BseGI GGATG 3 cut(s) 131, 787, 993
BseLI CCNNNNNNNGG 2 cut(s) 366, 1056
BseMI GCAATG 2 cut(s) 950, 1009
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 969
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 5 cut(s) 245, 337, 903, 967, 1072
Bsh1236I CGCG 6 cut(s) 127, 165, 411, 614, 779, 1019
BshFI GGCC 3 cut(s) 370, 544, 608
BshNI GGYRCC 1 cut(s) 1106
BshTI ACCGGT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 8 cut(s) 146, 402, 541, 554, 869, 893, 1057, 1080
BslI CCNNNNNNNGG 2 cut(s) 366, 1056
BsmAI GTCTC 2 cut(s) 491, 966
BsnI GGCC 3 cut(s) 370, 544, 608
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 6 cut(s) 128, 207, 406, 438, 498, 889
Bsp68I TCGCGA 2 cut(s) 127, 165
BspANI GGCC 3 cut(s) 370, 544, 608
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 6 cut(s) 127, 165, 411, 614, 779, 1019
BspLI GGNNCC 3 cut(s) 577, 891, 1108
BspPI GGATC 3 cut(s) 414, 884, 897
BspT107I GGYRCC 1 cut(s) 1106
BspTNI GGTCTC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 950, 1009
BsrFI RCCGGY 4 cut(s) 145, 540, 868, 1056
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 1 cut(s) 969
BssAI RCCGGY 4 cut(s) 145, 540, 868, 1056
BssECI CCNNGG 3 cut(s) 402, 777, 855
BssMI GATC 6 cut(s) 128, 207, 406, 438, 498, 889
BssNI GRCGYC 2 cut(s) 29, 774
Bst2UI CCWGG 1 cut(s) 1067
Bst4CI ACNGT 3 cut(s) 826, 856, 935
Bst6I CTCTTC 2 cut(s) 96, 639
BstACI GRCGYC 2 cut(s) 29, 774
BstAUI TGTACA 1 cut(s) 669
BstC8I GCNNGC 3 cut(s) 167, 542, 978
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 2 cut(s) 777, 855
BstF5I GGATG 3 cut(s) 131, 787, 993
BstFNI CGCG 6 cut(s) 127, 165, 411, 614, 779, 1019
BstH2I RGCGCY 1 cut(s) 1066
BstHHI GCGC 1 cut(s) 1065
BstKTI GATC 6 cut(s) 131, 210, 409, 441, 501, 892
BstMAI GTCTC 2 cut(s) 491, 966
BstMBI GATC 6 cut(s) 128, 207, 406, 438, 498, 889
BstMWI GCNNNNNNNGC 7 cut(s) 162, 175, 260, 417, 599, 874, 883
BstNI CCWGG 1 cut(s) 1067
BstSCI CCNGG 2 cut(s) 401, 1065
BstUI CGCG 6 cut(s) 127, 165, 411, 614, 779, 1019
BstV1I GCAGC 5 cut(s) 245, 337, 903, 967, 1072
BstV2I GAAGAC 2 cut(s) 152, 1040
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 3 cut(s) 370, 544, 608
BtgI CCRYGG 2 cut(s) 777, 855
BtgZI GCGATG 2 cut(s) 67, 595
BtsCI GGATG 3 cut(s) 131, 787, 993
BtsIMutI CAGTG 5 cut(s) 195, 210, 511, 831, 976
BtuMI TCGCGA 2 cut(s) 127, 165
Cac8I GCNNGC 3 cut(s) 167, 542, 978
CfoI GCGC 1 cut(s) 1065
Cfr10I RCCGGY 4 cut(s) 145, 540, 868, 1056
Cfr42I CCGCGG 1 cut(s) 780
CseI GACGC 3 cut(s) 18, 782, 917
Csp6I GTAC 1 cut(s) 670
CspAI ACCGGT 1 cut(s) 145
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 1 cut(s) 213
DpnI GATC 6 cut(s) 130, 209, 408, 440, 500, 891
DpnII GATC 6 cut(s) 128, 207, 406, 438, 498, 889
EaeI YGGCCR 1 cut(s) 542
Eam1104I CTCTTC 2 cut(s) 96, 639
EarI CTCTTC 2 cut(s) 96, 639
EciI GGCGGA 3 cut(s) 49, 236, 527
Ecl136II GAGCTC 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 838
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 2 cut(s) 77, 778
Eco88I CYCGRG 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 1065
EcoRV GATATC 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 256
FaiI YATR 6 cut(s) 221, 398, 437, 547, 925, 998
FalI AAGNNNNNCTT 4 cut(s) 648, 680, 1022, 1054
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 438
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 8 cut(s) 73, 234, 237, 326, 777, 917, 981, 1061
FokI GGATG 3 cut(s) 118, 794, 1000
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 8 cut(s) 73, 234, 237, 326, 777, 917, 981, 1061
FspBI CTAG 4 cut(s) 296, 965, 984, 1123
GlaI GCGC 1 cut(s) 1064
GluI GCNGC 8 cut(s) 73, 234, 237, 326, 777, 917, 981, 1061
HaeII RGCGCY 1 cut(s) 1066
HaeIII GGCC 3 cut(s) 370, 544, 608
HapII CCGG 8 cut(s) 146, 402, 541, 554, 869, 893, 1057, 1080
HgaI GACGC 3 cut(s) 18, 782, 917
HhaI GCGC 1 cut(s) 1065
Hin1I GRCGYC 2 cut(s) 29, 774
Hin6I GCGC 1 cut(s) 1063
HinP1I GCGC 1 cut(s) 1063
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 709, 901, 959
HpaII CCGG 8 cut(s) 146, 402, 541, 554, 869, 893, 1057, 1080
HphI GGTGA 1 cut(s) 1069
Hpy166II GTNNAC 3 cut(s) 652, 672, 772
Hpy188I TCNGA 5 cut(s) 52, 289, 357, 700, 900
Hpy188III TCNNGA 9 cut(s) 126, 164, 173, 257, 376, 488, 496, 844, 905
Hpy8I GTNNAC 3 cut(s) 652, 672, 772
Hpy99I CGWCG 1 cut(s) 911
HpyAV CCTTC 4 cut(s) 88, 111, 469, 806
HpyCH4III ACNGT 3 cut(s) 826, 856, 935
HpyCH4V TGCA 3 cut(s) 877, 955, 1007
HpyF10VI GCNNNNNNNGC 7 cut(s) 162, 175, 260, 417, 599, 874, 883
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 2 cut(s) 29, 774
HspAI GCGC 1 cut(s) 1063
KroI GCCGGC 1 cut(s) 540
KroNI GCCGGC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 438
KspI CCGCGG 1 cut(s) 780
Kzo9I GATC 6 cut(s) 128, 207, 406, 438, 498, 889
LmnI GCTCC 3 cut(s) 80, 333, 355
Lsp1109I GCAGC 5 cut(s) 245, 337, 903, 967, 1072
LweI GCATC 1 cut(s) 337
MaeI CTAG 4 cut(s) 296, 965, 984, 1123
MaeIII GTNAC 3 cut(s) 139, 521, 749
MalI GATC 6 cut(s) 130, 209, 408, 440, 500, 891
MbiI CCGCTC 1 cut(s) 75
MboI GATC 6 cut(s) 128, 207, 406, 438, 498, 889
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 6 cut(s) 13, 462, 470, 491, 677, 818
MlyI GAGTC 1 cut(s) 968
MmeI TCCRAC 1 cut(s) 723
MroNI GCCGGC 1 cut(s) 540
MseI TTAA 2 cut(s) 270, 693
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 8 cut(s) 146, 402, 541, 554, 869, 893, 1057, 1080
MspR9I CCNGG 2 cut(s) 403, 1067
MvaI CCWGG 1 cut(s) 1067
MvnI CGCG 6 cut(s) 127, 165, 411, 614, 779, 1019
MwoI GCNNNNNNNGC 7 cut(s) 162, 175, 260, 417, 599, 874, 883
NaeI GCCGGC 1 cut(s) 542
NciI CCSGG 1 cut(s) 403
NdeII GATC 6 cut(s) 128, 207, 406, 438, 498, 889
NgoMIV GCCGGC 1 cut(s) 540
NlaIV GGNNCC 3 cut(s) 577, 891, 1108
NmeAIII GCCGAG 2 cut(s) 275, 478
NmuCI GTSAC 2 cut(s) 139, 749
NruI TCGCGA 2 cut(s) 127, 165
PaeR7I CTCGAG 1 cut(s) 569
PceI AGGCCT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 2 cut(s) 169, 657
PdiI GCCGGC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 709, 901
PflFI GACNNNGTC 2 cut(s) 656, 1039
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 8 cut(s) 74, 235, 238, 327, 778, 918, 982, 1062
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 1065
PspGI CCWGG 1 cut(s) 1065
PspN4I GGNNCC 3 cut(s) 577, 891, 1108
PspXI VCTCGAGB 1 cut(s) 569
PsuI RGATCY 1 cut(s) 889
PsyI GACNNNGTC 2 cut(s) 656, 1039
RruI TCGCGA 2 cut(s) 127, 165
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
SacI GAGCTC 1 cut(s) 256
SacII CCGCGG 1 cut(s) 780
SalI GTCGAC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 270, 693
SatI GCNGC 8 cut(s) 73, 234, 237, 326, 777, 917, 981, 1061
Sau3AI GATC 6 cut(s) 128, 207, 406, 438, 498, 889
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 2 cut(s) 403, 1067
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 569
Sfr303I CCGCGG 1 cut(s) 780
SgrBI CCGCGG 1 cut(s) 780
SlaI CTCGAG 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 255, 569
SmoI CTYRAG 2 cut(s) 255, 569
Sse9I AATT 6 cut(s) 13, 462, 470, 491, 677, 818
SseBI AGGCCT 1 cut(s) 370
SspMI CTAG 4 cut(s) 296, 965, 984, 1123
SstI GAGCTC 1 cut(s) 256
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 401, 1065
TaaI ACNGT 3 cut(s) 826, 856, 935
TaqI TCGA 6 cut(s) 300, 489, 570, 651, 660, 906
TasI AATT 6 cut(s) 13, 462, 470, 491, 677, 818
TatI WGTACW 1 cut(s) 669
TauI GCSGC 3 cut(s) 75, 239, 779
TfiI GAWTC 2 cut(s) 709, 901
Tru1I TTAA 2 cut(s) 270, 693
Tru9I TTAA 2 cut(s) 270, 693
TscAI CASTG 5 cut(s) 195, 217, 511, 831, 976
TseFI GTSAC 2 cut(s) 139, 749
TseI GCWGC 5 cut(s) 233, 325, 916, 980, 1060
Tsp45I GTSAC 2 cut(s) 139, 749
TspDTI ATGAA 3 cut(s) 70, 174, 236
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 5 cut(s) 195, 217, 511, 831, 976
Tth111I GACNNNGTC 2 cut(s) 656, 1039
XapI RAATTY 3 cut(s) 13, 491, 677
XhoI CTCGAG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 4 cut(s) 296, 965, 984, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.