pycom05g31500

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015012
Physical Location & Seq
Forward (+)
31232686 .. 31233789
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31500.1

Sequence Viewer

Length: 1104 bp
ATGTGGGCGTCCTCAACGCCCTCACTTTCCGACACCTCCGCCCTCTCCTGCCGCTCCTTCATCGCCCCTCTTCAGCTTCCTTCCCAAAACTCCCTCCCCGCCTCGCGATCATCCTCCGTGACACCGGTTCAATGCGGTCTTCGCGAGCTTCGCGAGCGTATTTCATCAGTGAAGAACACGCAGAAGATCACTGAGGCTATGAAGCTTGTGGCAGCCGCCAAAGTCCGCCGAGCTCAAGAGGCTGTCGTTAATGGCAGACCCTTTTCGGAAACCCTAGTCGAAGTTCTTTACAACATCAATGAGCAGCTCCAAGTGGAAGACATTGATGCTCCTCTGACCAAAGTTAGGCCTGTCAAGAAAGTTGCTCTCGTTGTCATAACCGGGGATCGCGGTCTTTGCGGAGGTTTCAACAATATGATCATCAAAAAAGCCGAGAGAAGAATTGCCGAATTGAAGGCTCTTGGTCTCGAATTCACGGTCATCAGTGTCGGTAAAAAGGGTAACTCGTATTTCCTCCGCCGGCCATACATTCCGGTTGATAAGTTCCTCGAAGGAACCAACCTCCCAACTGCCAAAGAAGCGCAGGCCATCGCGGACGATGTTTTCTCCCTTTTCGTAAGTGAAGAGGTCGACAAAGTCGAGCTTTTGTACACGAAATTCGTGTCGTTGGTTAAATCCGACCCTGTTATTCACACCCTGCTTCCACTCTCGCCGAAGGGAGAGATTTGTGACATCAATGGCGTTTGTGTGGACGCCGTGGATGATGAGTTCTTCAGGCTGACAACAAAGGAAGGGAAATTGACGGTGGAGAGAGATATCATCAAGACACAGACCGTGGATTTCACGCCGGTTTTGCAGTTTGAGCAGGATCCGGTTCAGATTCTCGACGCTTTGCTGCCGTTATACCTCAACAGTCAGCTTTTGAGGGCATTGCAGGAGTCTCTAGCCAGTGAGCTTGCTGCTAGGATGACTGCCATGAGCAATGCAACTGATAACGCGGTGGAGTTGAAGAAGACCTTGTCGCAGACCTACAACCGGCAGCGCCAGGCAAAAATCACTGGAGAGATTTTGGAGATTGTTTCGGGTGCCAACGCTTTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009767 GO:0009772 GO:0009941 GO:0009987 GO:0015672 GO:0015979 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019684 GO:0019693 GO:0022900 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050790 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map00190 map00195 map01100 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

368

Amino Acids

40.41

Weight (kDa)

6.68

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 47 - 366 1.1e-93 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04640
fragaria_vesca FvH4_3g02060
malus_domestica MD05G1347300.v1.1 MD10G1321500.v1.1
prunus_persica Prupe.4G020800_v2.0.a1
pyrus_communis pycom05g31500 pycom10g27220
rosa_chinensis RchiOBHm_Chr5g0002961
rosa_laevigata RLG00000031074
rosa_multiflora Rmu_sc0013603.1_g000002
rosa_rugosa Rorug04G0400900
rosa_samantha Rh5AG023900 Rh5BG026600 Rh5CG026700 Rh5DG025200
rosa_wichuraiana Rw5G002260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1085
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 630
AccII CGCG 6 cut(s) 106, 144, 153, 390, 593, 998
AclWI GGATC 3 cut(s) 393, 863, 876
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 2 cut(s) 470, 656
AcuI CTGAAG 2 cut(s) 56, 757
AcyI GRCGYC 2 cut(s) 8, 753
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 2 cut(s) 345, 1035
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 4 cut(s) 131, 409, 454, 1009
AjnI CCWGG 1 cut(s) 1044
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
AluBI AGCT 8 cut(s) 76, 148, 205, 233, 307, 643, 919, 955
AluI AGCT 8 cut(s) 76, 148, 205, 233, 307, 643, 919, 955
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 470, 945
AlwI GGATC 3 cut(s) 393, 863, 876
AoxI GGCC 3 cut(s) 347, 521, 585
ApeKI GCWGC 5 cut(s) 212, 304, 895, 959, 1039
ApoI RAATTY 2 cut(s) 470, 656
ArsI GACNNNNNNTTYG 4 cut(s) 462, 494, 647, 679
AsiGI ACCGGT 1 cut(s) 124
AspLEI GCGC 2 cut(s) 583, 1044
AsuC2I CCSGG 1 cut(s) 382
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 1085
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 3 cut(s) 131, 324, 1019
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 5 cut(s) 224, 316, 882, 946, 1051
BccI CCATC 1 cut(s) 596
BceAI ACGGC 2 cut(s) 740, 883
BciT130I CCWGG 1 cut(s) 1046
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 470, 945
BfaI CTAG 4 cut(s) 275, 944, 963, 1102
BfoI RGCGCY 1 cut(s) 1045
BisI GCNGC 7 cut(s) 52, 213, 216, 305, 896, 960, 1040
BlsI GCNGC 7 cut(s) 53, 214, 217, 306, 897, 961, 1041
Bme1390I CCNGG 2 cut(s) 382, 1046
BmiI GGNNCC 3 cut(s) 556, 870, 1087
BmrFI CCNGG 2 cut(s) 382, 1046
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 3 cut(s) 131, 324, 1019
BpmI CTGGAG 1 cut(s) 1080
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 382
BsaHI GRCGYC 2 cut(s) 8, 753
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 3 cut(s) 381, 756, 834
BsaWI WCCGGW 3 cut(s) 124, 532, 871
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 1035
Bse118I RCCGGY 4 cut(s) 124, 519, 847, 1035
Bse1I ACTGG 2 cut(s) 948, 1063
Bse3DI GCAATG 2 cut(s) 929, 988
BseBI CCWGG 1 cut(s) 1046
BseDI CCNNGG 3 cut(s) 381, 756, 834
BseGI GGATG 3 cut(s) 110, 766, 972
BseLI CCNNNNNNNGG 2 cut(s) 345, 1035
BseMI GCAATG 2 cut(s) 929, 988
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 948, 1063
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 5 cut(s) 224, 316, 882, 946, 1051
Bsh1236I CGCG 6 cut(s) 106, 144, 153, 390, 593, 998
BshFI GGCC 3 cut(s) 349, 523, 587
BshNI GGYRCC 1 cut(s) 1085
BshTI ACCGGT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 7 cut(s) 125, 381, 520, 533, 848, 872, 1036
BslI CCNNNNNNNGG 2 cut(s) 345, 1035
BsmAI GTCTC 2 cut(s) 470, 945
BsnI GGCC 3 cut(s) 349, 523, 587
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 5 cut(s) 107, 186, 385, 417, 868
Bsp68I TCGCGA 3 cut(s) 106, 144, 153
BspANI GGCC 3 cut(s) 349, 523, 587
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 6 cut(s) 106, 144, 153, 390, 593, 998
BspLI GGNNCC 3 cut(s) 556, 870, 1087
BspPI GGATC 3 cut(s) 393, 863, 876
BspT107I GGYRCC 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 929, 988
BsrFI RCCGGY 4 cut(s) 124, 519, 847, 1035
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 2 cut(s) 948, 1063
BssAI RCCGGY 4 cut(s) 124, 519, 847, 1035
BssECI CCNNGG 3 cut(s) 381, 756, 834
BssMI GATC 5 cut(s) 107, 186, 385, 417, 868
BssNI GRCGYC 2 cut(s) 8, 753
Bst2UI CCWGG 1 cut(s) 1046
Bst4CI ACNGT 4 cut(s) 478, 805, 835, 914
Bst6I CTCTTC 2 cut(s) 75, 618
BstACI GRCGYC 2 cut(s) 8, 753
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 5 cut(s) 146, 155, 521, 585, 957
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 2 cut(s) 756, 834
BstF5I GGATG 3 cut(s) 110, 766, 972
BstFNI CGCG 6 cut(s) 106, 144, 153, 390, 593, 998
BstH2I RGCGCY 1 cut(s) 1045
BstHHI GCGC 2 cut(s) 583, 1044
BstKTI GATC 5 cut(s) 110, 189, 388, 420, 871
BstMAI GTCTC 2 cut(s) 470, 945
BstMBI GATC 5 cut(s) 107, 186, 385, 417, 868
BstMWI GCNNNNNNNGC 8 cut(s) 141, 150, 154, 239, 396, 578, 853, 862
BstNI CCWGG 1 cut(s) 1046
BstSCI CCNGG 2 cut(s) 380, 1044
BstUI CGCG 6 cut(s) 106, 144, 153, 390, 593, 998
BstV1I GCAGC 5 cut(s) 224, 316, 882, 946, 1051
BstV2I GAAGAC 3 cut(s) 131, 324, 1019
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 3 cut(s) 349, 523, 587
BtgI CCRYGG 2 cut(s) 756, 834
BtgZI GCGATG 2 cut(s) 46, 574
BtsCI GGATG 3 cut(s) 110, 766, 972
BtsIMutI CAGTG 5 cut(s) 174, 189, 490, 955, 1056
BtuMI TCGCGA 3 cut(s) 106, 144, 153
Cac8I GCNNGC 5 cut(s) 146, 155, 521, 585, 957
CfoI GCGC 2 cut(s) 583, 1044
Cfr10I RCCGGY 4 cut(s) 124, 519, 847, 1035
CseI GACGC 2 cut(s) 761, 896
Csp6I GTAC 1 cut(s) 649
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 1 cut(s) 976
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 1 cut(s) 192
DpnI GATC 5 cut(s) 109, 188, 387, 419, 870
DpnII GATC 5 cut(s) 107, 186, 385, 417, 868
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 75, 618
EarI CTCTTC 2 cut(s) 75, 618
EciI GGCGGA 3 cut(s) 28, 215, 506
Ecl136II GAGCTC 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 817
Eco53kI GAGCTC 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 56, 757
EcoICRI GAGCTC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 1044
EcoRV GATATC 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 1 cut(s) 979
FaiI YATR 6 cut(s) 200, 377, 416, 526, 904, 977
FalI AAGNNNNNCTT 4 cut(s) 627, 659, 1001, 1033
FatI CATG 1 cut(s) 975
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 417
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 7 cut(s) 52, 213, 216, 305, 896, 960, 1040
FokI GGATG 3 cut(s) 97, 773, 979
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 7 cut(s) 52, 213, 216, 305, 896, 960, 1040
FspBI CTAG 4 cut(s) 275, 944, 963, 1102
GlaI GCGC 2 cut(s) 582, 1043
GluI GCNGC 7 cut(s) 52, 213, 216, 305, 896, 960, 1040
GsuI CTGGAG 1 cut(s) 1080
HaeII RGCGCY 1 cut(s) 1045
HaeIII GGCC 3 cut(s) 349, 523, 587
HapII CCGG 7 cut(s) 125, 381, 520, 533, 848, 872, 1036
HgaI GACGC 2 cut(s) 761, 896
HhaI GCGC 2 cut(s) 583, 1044
Hin1I GRCGYC 2 cut(s) 8, 753
Hin1II CATG 1 cut(s) 979
Hin6I GCGC 2 cut(s) 581, 1042
HinP1I GCGC 2 cut(s) 581, 1042
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 880, 938
HpaII CCGG 7 cut(s) 125, 381, 520, 533, 848, 872, 1036
Hpy166II GTNNAC 3 cut(s) 631, 651, 751
Hpy188I TCNGA 5 cut(s) 31, 268, 336, 679, 879
Hpy188III TCNNGA 8 cut(s) 105, 143, 152, 236, 355, 467, 823, 884
Hpy8I GTNNAC 3 cut(s) 631, 651, 751
Hpy99I CGWCG 1 cut(s) 890
HpyAV CCTTC 6 cut(s) 67, 90, 448, 545, 709, 785
HpyCH4III ACNGT 4 cut(s) 478, 805, 835, 914
HpyCH4V TGCA 3 cut(s) 856, 934, 986
HpyF10VI GCNNNNNNNGC 8 cut(s) 141, 150, 154, 239, 396, 578, 853, 862
HpyF3I CTNAG 1 cut(s) 192
Hsp92I GRCGYC 2 cut(s) 8, 753
Hsp92II CATG 1 cut(s) 979
HspAI GCGC 2 cut(s) 581, 1042
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 5 cut(s) 107, 186, 385, 417, 868
LmnI GCTCC 3 cut(s) 59, 312, 334
Lsp1109I GCAGC 5 cut(s) 224, 316, 882, 946, 1051
LweI GCATC 1 cut(s) 316
MaeI CTAG 4 cut(s) 275, 944, 963, 1102
MaeIII GTNAC 3 cut(s) 118, 500, 728
MalI GATC 5 cut(s) 109, 188, 387, 419, 870
MbiI CCGCTC 1 cut(s) 54
MboI GATC 5 cut(s) 107, 186, 385, 417, 868
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 5 cut(s) 441, 449, 470, 656, 797
MlyI GAGTC 1 cut(s) 947
MmeI TCCRAC 2 cut(s) 54, 702
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 2 cut(s) 249, 672
MspI CCGG 7 cut(s) 125, 381, 520, 533, 848, 872, 1036
MspR9I CCNGG 2 cut(s) 382, 1046
MvaI CCWGG 1 cut(s) 1046
MvnI CGCG 6 cut(s) 106, 144, 153, 390, 593, 998
MwoI GCNNNNNNNGC 8 cut(s) 141, 150, 154, 239, 396, 578, 853, 862
NaeI GCCGGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 382
NdeII GATC 5 cut(s) 107, 186, 385, 417, 868
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 1 cut(s) 979
NlaIV GGNNCC 3 cut(s) 556, 870, 1087
NmeAIII GCCGAG 2 cut(s) 254, 457
NmuCI GTSAC 2 cut(s) 118, 728
NruI TCGCGA 3 cut(s) 106, 144, 153
PceI AGGCCT 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 880
PflFI GACNNNGTC 2 cut(s) 635, 1018
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 7 cut(s) 53, 214, 217, 306, 897, 961, 1041
PleI GAGTC 1 cut(s) 946
PpsI GAGTC 1 cut(s) 946
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 1044
PspGI CCWGG 1 cut(s) 1044
PspN4I GGNNCC 3 cut(s) 556, 870, 1087
PsuI RGATCY 1 cut(s) 868
PsyI GACNNNGTC 2 cut(s) 635, 1018
RruI TCGCGA 3 cut(s) 106, 144, 153
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SacI GAGCTC 1 cut(s) 235
SalI GTCGAC 1 cut(s) 629
SaqAI TTAA 2 cut(s) 249, 672
SatI GCNGC 7 cut(s) 52, 213, 216, 305, 896, 960, 1040
Sau3AI GATC 5 cut(s) 107, 186, 385, 417, 868
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 2 cut(s) 382, 1046
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 5 cut(s) 441, 449, 470, 656, 797
SseBI AGGCCT 1 cut(s) 349
SspMI CTAG 4 cut(s) 275, 944, 963, 1102
SstI GAGCTC 1 cut(s) 235
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 2 cut(s) 380, 1044
TaaI ACNGT 4 cut(s) 478, 805, 835, 914
TaqI TCGA 6 cut(s) 279, 468, 549, 630, 639, 885
TasI AATT 5 cut(s) 441, 449, 470, 656, 797
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 54, 218
TfiI GAWTC 1 cut(s) 880
Tru1I TTAA 2 cut(s) 249, 672
Tru9I TTAA 2 cut(s) 249, 672
TscAI CASTG 5 cut(s) 174, 196, 490, 955, 1063
TseFI GTSAC 2 cut(s) 118, 728
TseI GCWGC 5 cut(s) 212, 304, 895, 959, 1039
Tsp45I GTSAC 2 cut(s) 118, 728
TspDTI ATGAA 3 cut(s) 49, 153, 215
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 5 cut(s) 174, 196, 490, 955, 1063
Tth111I GACNNNGTC 2 cut(s) 635, 1018
XapI RAATTY 2 cut(s) 470, 656
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 4 cut(s) 275, 944, 963, 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.