Prupe.4G020800_v2.0.a1

ATP synthase gamma chain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
973606 .. 975212
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G020800.1

Sequence Viewer

Length: 1131 bp
ATGTCTTGTTCAAATTTGACAATGTGGGTGTCTTCAAAACCTGCCCTTTCTGACACCTCCTCGCTCTCCTGCCGTTCTTTTATCAGCCCTTTTCAGCTTCCTTCACAAAACTCTCTCCCTGCCAGCCCCTCAAGATCGTCTTCTGTGTCCCCGATTCACTGCGGTCTCCGTGAGCTTCGAGAACGTATTGATTCTGTAAAGAACACCCAGAAGATCACTGAGGCTATGAAGCTTGTGGCAGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTTAATGGAAGACCCTTCTCGGAAACTCTTGTGGAAGTTCTTTACAACATCAATGAGCAGCTCCAAGTGGAAGACATAGATGCTCCTCTGACCAATGTTAGGCCTGTCAAGAAAGTTGCTCTTGTTGTCATAACCGGCGATCGTGGTCTTTGTGGAGGTTTCAACAATTCAATTATCAAGAAAGCTGAGAGAAGAATATCTGAATTGAAGGCTCTTGGTCTCGAATACACGATCATCAGCGTTGGCAAAAAGGGTAACTCTTATTTTCTAAGGCGGCCTTACATTCCAGTTGATAAGTTTCTTGAGGGAACCAACCTCCCAACTGCCAAAGAAGCACAGGCCATTGCAGATGATGTGTTCTCCCTCTTTGTGAGTGAAGAAGTTGACAAAGTTGAGCTTTTGTACACCAAATTCGTGTCGTTGGTTAAGTCTGACCCTGTGATTCATACCTTGCTTCCACTCTCACCAAAAGGAGAGATTTGTGATATTAATGGTGTGTGTGTGGATGCTGCCGACGATGAGTTCTTCAGGTTGACAACAAAGGAAGGGAAGTTGACTGTAGAGAGAGATGTGGTGAGGACAACAACCGTGGATTTCACACCGGTTTTGCAATTCGAGCAGGATCCAGTTCAGATTCTTGATGCTTTGCTGCCTTTGTACCTCAACAGTCAGATTTTGAGGGCATTGCAAGAGTCACTAGCCAGTGAGCTTGCTGCTAGAATGAGTGCTATGAGCAATGCAACTGATAATGCAGTGGAGTTGAAGAAGAACTTGTCCAGGGTCTACAACAGGCAGCGCCAGGCCAAAATCACAGGAGAGATATTGGAGATTGTTTCTGGTGCCAATGCCTTAGTTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

377

Amino Acids

41.43

Weight (kDa)

6.78

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04640
fragaria_vesca FvH4_3g02060
malus_domestica MD05G1347300.v1.1 MD10G1321500.v1.1
prunus_persica Prupe.4G020800_v2.0.a1
pyrus_communis pycom05g31500 pycom10g27220
rosa_chinensis RchiOBHm_Chr5g0002961
rosa_laevigata RLG00000031074
rosa_multiflora Rmu_sc0013603.1_g000002
rosa_rugosa Rorug04G0400900
rosa_samantha Rh5AG023900 Rh5BG026600 Rh5CG026700 Rh5DG025200
rosa_wichuraiana Rw5G002260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 1112
AccI GTMKAC 1 cut(s) 1056
AciI CCGC 3 cut(s) 162, 253, 547
AclWI GGATC 2 cut(s) 890, 903
AcsI RAATTY 2 cut(s) 13, 683
AcuI CTGAAG 1 cut(s) 784
AfaI GTAC 2 cut(s) 677, 932
AfiI CCNNNNNNNGG 1 cut(s) 372
AgeI ACCGGT 1 cut(s) 874
AgsI TTSAA 6 cut(s) 12, 36, 436, 444, 481, 1036
AjnI CCWGG 2 cut(s) 1049, 1071
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 170, 497
AlwI GGATC 2 cut(s) 890, 903
AoxI GGCC 4 cut(s) 374, 548, 612, 1074
ApeKI GCWGC 7 cut(s) 239, 242, 331, 782, 922, 986, 1066
ApoI RAATTY 2 cut(s) 13, 683
AseI ATTAAT 1 cut(s) 762
AsiGI ACCGGT 1 cut(s) 874
AspLEI GCGC 1 cut(s) 1071
AsuHPI GGTGA 2 cut(s) 729, 859
BamHI GGATCC 1 cut(s) 895
BanI GGYRCC 1 cut(s) 1112
BanII GRGCYC 1 cut(s) 262
BbsI GAAGAC 4 cut(s) 24, 132, 289, 351
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 7 cut(s) 229, 251, 343, 769, 909, 973, 1078
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 2 cut(s) 1051, 1073
BcoDI GTCTC 2 cut(s) 170, 497
BfaI CTAG 2 cut(s) 971, 990
BfmI CTRYAG 1 cut(s) 831
BfoI RGCGCY 1 cut(s) 1072
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 8 cut(s) 240, 243, 332, 548, 783, 923, 987, 1067
BlsI GCNGC 8 cut(s) 241, 244, 333, 549, 784, 924, 988, 1068
Bme1390I CCNGG 2 cut(s) 1051, 1073
BmiI GGNNCC 3 cut(s) 583, 897, 1114
BmrFI CCNGG 2 cut(s) 1051, 1073
BmsI GCATC 3 cut(s) 343, 769, 904
BpiI GAAGAC 4 cut(s) 24, 132, 289, 351
BpuEI CTTGAG 3 cut(s) 115, 246, 596
BsaI GGTCTC 2 cut(s) 170, 497
BsaJI CCNNGG 2 cut(s) 861, 1050
BsaWI WCCGGW 1 cut(s) 874
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 2 cut(s) 407, 874
Bse1I ACTGG 3 cut(s) 560, 899, 975
Bse3DI GCAATG 3 cut(s) 615, 956, 1015
BseBI CCWGG 2 cut(s) 1051, 1073
BseDI CCNNGG 2 cut(s) 861, 1050
BseGI GGATG 1 cut(s) 784
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 3 cut(s) 615, 956, 1015
BseMII CTCAG 2 cut(s) 210, 450
BseNI ACTGG 3 cut(s) 560, 899, 975
BseRI GAGGAG 2 cut(s) 49, 348
BseXI GCAGC 7 cut(s) 229, 251, 343, 769, 909, 973, 1078
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 4 cut(s) 376, 550, 614, 1076
BshNI GGYRCC 1 cut(s) 1112
BshTI ACCGGT 1 cut(s) 874
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 2 cut(s) 408, 875
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 2 cut(s) 170, 497
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 4 cut(s) 376, 550, 614, 1076
Bso31I GGTCTC 2 cut(s) 170, 497
Bsp1286I GDGCHC 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 5 cut(s) 134, 213, 412, 504, 895
BspACI CCGC 3 cut(s) 162, 253, 547
BspANI GGCC 4 cut(s) 376, 550, 614, 1076
BspCNI CTCAG 2 cut(s) 211, 451
BspLI GGNNCC 3 cut(s) 583, 897, 1114
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 2 cut(s) 890, 903
BspT107I GGYRCC 1 cut(s) 1112
BspTNI GGTCTC 2 cut(s) 170, 497
BsrDI GCAATG 3 cut(s) 615, 956, 1015
BsrFI RCCGGY 2 cut(s) 407, 874
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 3 cut(s) 560, 899, 975
BssAI RCCGGY 2 cut(s) 407, 874
BssECI CCNNGG 2 cut(s) 861, 1050
BssMI GATC 5 cut(s) 134, 213, 412, 504, 895
Bst2UI CCWGG 2 cut(s) 1051, 1073
Bst4CI ACNGT 3 cut(s) 832, 862, 941
BstAUI TGTACA 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 124, 984
BstDEI CTNAG 4 cut(s) 219, 459, 542, 1123
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 1 cut(s) 784
BstH2I RGCGCY 1 cut(s) 1072
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 5 cut(s) 137, 216, 415, 507, 898
BstMAI GTCTC 2 cut(s) 170, 497
BstMBI GATC 5 cut(s) 134, 213, 412, 504, 895
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 266, 605, 889
BstNI CCWGG 2 cut(s) 1051, 1073
BstSCI CCNGG 2 cut(s) 1049, 1071
BstSFI CTRYAG 1 cut(s) 831
BstV1I GCAGC 7 cut(s) 229, 251, 343, 769, 909, 973, 1078
BstV2I GAAGAC 4 cut(s) 24, 132, 289, 351
BstX2I RGATCY 1 cut(s) 895
BstYI RGATCY 1 cut(s) 895
BsuRI GGCC 4 cut(s) 376, 550, 614, 1076
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 1 cut(s) 784
BtsI GCAGTG 2 cut(s) 157, 1032
BtsIMutI CAGTG 4 cut(s) 157, 216, 982, 1032
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 124, 984
CfoI GCGC 1 cut(s) 1071
Cfr10I RCCGGY 2 cut(s) 407, 874
Csp6I GTAC 2 cut(s) 676, 931
CspAI ACCGGT 1 cut(s) 874
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviQI GTAC 2 cut(s) 676, 931
DdeI CTNAG 4 cut(s) 219, 459, 542, 1123
DpnI GATC 5 cut(s) 136, 215, 414, 506, 897
DpnII GATC 5 cut(s) 134, 213, 412, 504, 895
Ecl136II GAGCTC 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 2 cut(s) 170, 497
Eco53kI GAGCTC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 1049, 1071
EcoT38I GRGCYC 1 cut(s) 262
FaiI YATR 5 cut(s) 227, 350, 404, 720, 1004
FaqI GGGAC 1 cut(s) 133
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 8 cut(s) 240, 243, 332, 548, 783, 923, 987, 1067
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 8 cut(s) 240, 243, 332, 548, 783, 923, 987, 1067
FspBI CTAG 2 cut(s) 971, 990
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 8 cut(s) 240, 243, 332, 548, 783, 923, 987, 1067
HaeII RGCGCY 1 cut(s) 1072
HaeIII GGCC 4 cut(s) 376, 550, 614, 1076
HapII CCGG 2 cut(s) 408, 875
HhaI GCGC 1 cut(s) 1071
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HincII GTYRAC 3 cut(s) 658, 807, 828
HindII GTYRAC 3 cut(s) 658, 807, 828
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 5 cut(s) 154, 191, 715, 907, 965
HpaII CCGG 2 cut(s) 408, 875
HphI GGTGA 2 cut(s) 729, 859
Hpy166II GTNNAC 5 cut(s) 658, 678, 807, 828, 1057
Hpy188I TCNGA 7 cut(s) 52, 295, 363, 475, 706, 906, 945
Hpy188III TCNNGA 8 cut(s) 132, 179, 263, 382, 451, 494, 575, 911
Hpy8I GTNNAC 5 cut(s) 658, 678, 807, 828, 1057
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 4 cut(s) 111, 298, 475, 812
HpyCH4III ACNGT 3 cut(s) 832, 862, 941
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 5 cut(s) 620, 883, 961, 1013, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 605, 889
HpyF3I CTNAG 4 cut(s) 219, 459, 542, 1123
HpySE526I ACGT 1 cut(s) 184
HspAI GCGC 1 cut(s) 1069
Kzo9I GATC 5 cut(s) 134, 213, 412, 504, 895
LmnI GCTCC 2 cut(s) 339, 361
Lsp1109I GCAGC 7 cut(s) 229, 251, 343, 769, 909, 973, 1078
LweI GCATC 3 cut(s) 343, 769, 904
MaeI CTAG 2 cut(s) 971, 990
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 527, 966
MalI GATC 5 cut(s) 136, 215, 414, 506, 897
MboI GATC 5 cut(s) 134, 213, 412, 504, 895
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 6 cut(s) 13, 439, 444, 476, 683, 884
MlyI GAGTC 1 cut(s) 974
MseI TTAA 3 cut(s) 276, 699, 762
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 408, 875
MspR9I CCNGG 2 cut(s) 1051, 1073
MvaI CCWGG 2 cut(s) 1051, 1073
MwoI GCNNNNNNNGC 3 cut(s) 266, 605, 889
NdeII GATC 5 cut(s) 134, 213, 412, 504, 895
NlaIV GGNNCC 3 cut(s) 583, 897, 1114
NmuCI GTSAC 1 cut(s) 966
PceI AGGCCT 1 cut(s) 376
PfeI GAWTC 4 cut(s) 154, 191, 715, 907
PinAI ACCGGT 1 cut(s) 874
PkrI GCNGC 8 cut(s) 241, 244, 333, 549, 784, 924, 988, 1068
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
PshBI ATTAAT 1 cut(s) 762
Psp124BI GAGCTC 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 1049, 1071
PspGI CCWGG 2 cut(s) 1049, 1071
PspN4I GGNNCC 3 cut(s) 583, 897, 1114
PsuI RGATCY 1 cut(s) 895
PvuI CGATCG 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 677, 932
RsaNI GTAC 2 cut(s) 676, 931
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 3 cut(s) 276, 699, 762
SatI GCNGC 8 cut(s) 240, 243, 332, 548, 783, 923, 987, 1067
Sau3AI GATC 5 cut(s) 134, 213, 412, 504, 895
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 2 cut(s) 1051, 1073
SduI GDGCHC 1 cut(s) 262
SfaNI GCATC 3 cut(s) 343, 769, 904
SfcI CTRYAG 1 cut(s) 831
SmlI CTYRAG 3 cut(s) 130, 261, 575
SmoI CTYRAG 3 cut(s) 130, 261, 575
Sse9I AATT 6 cut(s) 13, 439, 444, 476, 683, 884
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 3 cut(s) 162, 253, 547
SspMI CTAG 2 cut(s) 971, 990
SstI GAGCTC 1 cut(s) 262
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 1049, 1071
TaaI ACNGT 3 cut(s) 832, 862, 941
TaiI ACGT 1 cut(s) 187
TaqI TCGA 3 cut(s) 178, 495, 888
TasI AATT 6 cut(s) 13, 439, 444, 476, 683, 884
TatI WGTACW 1 cut(s) 675
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 4 cut(s) 154, 191, 715, 907
Tru1I TTAA 3 cut(s) 276, 699, 762
Tru9I TTAA 3 cut(s) 276, 699, 762
TscAI CASTG 4 cut(s) 164, 223, 982, 1032
TseFI GTSAC 1 cut(s) 966
TseI GCWGC 7 cut(s) 239, 242, 331, 782, 922, 986, 1066
Tsp45I GTSAC 1 cut(s) 966
TspDTI ATGAA 2 cut(s) 242, 707
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 4 cut(s) 164, 223, 982, 1032
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 2 cut(s) 13, 683
XmiI GTMKAC 1 cut(s) 1056
XspI CTAG 2 cut(s) 971, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.