Rorug04G0400900
MYB Family

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006162
Physical Location & Seq
Forward (+)
56577421 .. 56579715
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0400900.1

Sequence Viewer

Length: 819 bp
ATGAATGGAAAAAATGGGAGCGACCGTAAAATGGAGGGTTGCTTGATCAAATGCTCTCACGGCGGCAGCGCTCTCTTGAAAACCCTTAAACCTCTTCATCATCCCAAAACCCACATTCGCTGCTTCTCTTCAACGCCAATTCGCTCCGGCGAAGCCCTCCGATCGCCTCGCAGAGCCTACGACGCATTGTTGTTGGACGCCGGAGGCACTCTCTTGCAGCTGGCCAACCCCGTCGAAGAGGTCTACGCCTCCATAGGAACCCAATACGGTGTGACTGCAACTCCAGCTGAAATCAAGCAGGGGTTCAGAAGAGCCTTCTCTGCTCCTTGGCCTCAAAAGCTCCGATACCAGGGAGATGGGAGGCCATTTTGGAAACTAGTTGTTTCAGAAGCCACTGGTTGTTCTGATCTTGATTATTTCGAACACGTCTATCAGTACTATGCTAGAGGTGATTCATGGCGTTTACCCGATGGAGCTTATGAAACAATGGTACTTCTCAAGGATGCTGGAGTTAAGCTTGCTGTTGTATCGAATTTTGACTCCCGCTTAAGGAAGCTACTCGAGGAGCTGAATGTGTTGCATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGTTCTGAAAAACCAGATGCAAACATATTTAAAGCTGCTTTAGATCAAACTCATGCGGATGCTGGCAAGGCAGTACATGTTGGTGATGATGAAAATGCAGATAAGATTGGGGCCAATGCTGTTGGAATTGATTGCTGGTTATGGGGCAAGGAGGTGAAGACATTCTCCGACATTCGAAATAGAATTCTCATTTCAGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009767 GO:0009772 GO:0009941 GO:0009987 GO:0015672 GO:0015979 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019684 GO:0019693 GO:0022900 GO:0030234 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050790 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map00190 map00195 map01100 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

272

Amino Acids

30.01

Weight (kDa)

7.08

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 60 - 247 2.9e-21 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 139 - 250 2.2e-15 Haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AciI CCGC 3 cut(s) 63, 544, 671
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 532, 798
AcuI CTGAAG 1 cut(s) 591
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 3 cut(s) 437, 492, 690
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 3 cut(s) 31, 349, 549
AflII CTTAAG 1 cut(s) 547
AflIII ACRYGT 2 cut(s) 424, 691
AgsI TTSAA 2 cut(s) 79, 132
AhlI ACTAGT 1 cut(s) 376
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 8 cut(s) 220, 287, 340, 476, 517, 556, 568, 650
AluI AGCT 8 cut(s) 220, 287, 340, 476, 517, 556, 568, 650
Ama87I CYCGRG 1 cut(s) 560
Aor51HI AGCGCT 1 cut(s) 70
AoxI GGCC 4 cut(s) 222, 329, 362, 726
ApeKI GCWGC 4 cut(s) 66, 120, 217, 650
ApoI RAATTY 2 cut(s) 532, 798
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 726
AsuHPI GGTGA 3 cut(s) 461, 710, 781
AsuII TTCGAA 2 cut(s) 420, 790
AvaI CYCGRG 1 cut(s) 560
BalI TGGCCA 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 779
BbvI GCAGC 4 cut(s) 78, 107, 229, 637
BccI CCATC 2 cut(s) 350, 464
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 2 cut(s) 377, 444
BfoI RGCGCY 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 547
BisI GCNGC 5 cut(s) 64, 67, 121, 218, 651
BlsI GCNGC 5 cut(s) 65, 68, 122, 219, 652
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 560
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 2 cut(s) 259, 727
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 5 cut(s) 493, 580, 589, 622, 664
BpiI GAAGAC 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 2 cut(s) 267, 528
Bpu14I TTCGAA 2 cut(s) 420, 790
BpuEI CTTGAG 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 326, 349
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 265, 295
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 349, 549
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 326, 349
BseGI GGATG 3 cut(s) 100, 508, 679
BseLI CCNNNNNNNGG 3 cut(s) 31, 349, 549
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 4 cut(s) 78, 107, 229, 637
Bsh1285I CGRYCG 2 cut(s) 25, 164
BshFI GGCC 4 cut(s) 224, 331, 364, 728
BsiEI CGRYCG 2 cut(s) 25, 164
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 2 cut(s) 147, 201
BslI CCNNNNNNNGG 3 cut(s) 31, 349, 549
BsnI GGCC 4 cut(s) 224, 331, 364, 728
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 2 cut(s) 420, 790
Bsp143I GATC 4 cut(s) 45, 161, 406, 658
BspACI CCGC 3 cut(s) 63, 544, 671
BspANI GGCC 4 cut(s) 224, 331, 364, 728
BspLI GGNNCC 2 cut(s) 259, 727
BspQI GCTCTTC 1 cut(s) 304
BspT104I TTCGAA 2 cut(s) 420, 790
BspTI CTTAAG 1 cut(s) 547
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 326, 349
BssMI GATC 4 cut(s) 45, 161, 406, 658
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 26, 269
Bst6I CTCTTC 4 cut(s) 99, 133, 231, 304
BstACI GRCGYC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 547
BstBI TTCGAA 2 cut(s) 420, 790
BstC8I GCNNGC 3 cut(s) 222, 519, 679
BstF5I GGATG 3 cut(s) 100, 508, 679
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 4 cut(s) 48, 164, 409, 661
BstMBI GATC 4 cut(s) 45, 161, 406, 658
BstMCI CGRYCG 2 cut(s) 25, 164
BstMWI GCNNNNNNNGC 6 cut(s) 60, 182, 284, 320, 337, 683
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 78, 107, 229, 637
BstV2I GAAGAC 1 cut(s) 779
BstXI CCANNNNNNTGG 1 cut(s) 356
BsuRI GGCC 4 cut(s) 224, 331, 364, 728
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 100, 508, 679
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 3 cut(s) 222, 519, 679
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 726
CseI GACGC 2 cut(s) 191, 206
Csp6I GTAC 3 cut(s) 436, 491, 689
CviAII CATG 3 cut(s) 456, 668, 692
CviQI GTAC 3 cut(s) 436, 491, 689
DpnI GATC 4 cut(s) 47, 163, 408, 660
DpnII GATC 4 cut(s) 45, 161, 406, 658
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 4 cut(s) 99, 133, 231, 304
EarI CTCTTC 4 cut(s) 99, 133, 231, 304
Eco130I CCWWGG 1 cut(s) 326
Eco47III AGCGCT 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 3 cut(s) 459, 671, 695
FatI CATG 3 cut(s) 455, 667, 691
FauI CCCGC 1 cut(s) 551
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 5 cut(s) 64, 67, 121, 218, 651
FokI GGATG 3 cut(s) 87, 515, 686
Fsp4HI GCNGC 5 cut(s) 64, 67, 121, 218, 651
FspBI CTAG 2 cut(s) 377, 444
GlaI GCGC 1 cut(s) 70
GluI GCNGC 5 cut(s) 64, 67, 121, 218, 651
GsuI CTGGAG 2 cut(s) 267, 528
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 4 cut(s) 224, 331, 364, 728
HapII CCGG 2 cut(s) 147, 201
HgaI GACGC 2 cut(s) 191, 206
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 459, 671, 695
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 3 cut(s) 452, 539, 812
HpaII CCGG 2 cut(s) 147, 201
HphI GGTGA 3 cut(s) 461, 710, 781
Hpy166II GTNNAC 2 cut(s) 244, 464
Hpy188I TCNGA 9 cut(s) 161, 308, 344, 388, 406, 610, 622, 784, 811
Hpy188III TCNNGA 2 cut(s) 76, 410
Hpy8I GTNNAC 2 cut(s) 244, 464
Hpy99I CGWCG 2 cut(s) 185, 236
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 26, 269
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 5 cut(s) 217, 278, 580, 635, 713
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 182, 284, 320, 337, 683
HpySE526I ACGT 1 cut(s) 426
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 459, 671, 695
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 4 cut(s) 45, 161, 406, 658
LguI GCTCTTC 1 cut(s) 304
LmnI GCTCC 6 cut(s) 18, 149, 328, 345, 473, 565
Lsp1109I GCAGC 4 cut(s) 78, 107, 229, 637
LweI GCATC 5 cut(s) 493, 580, 589, 622, 664
MaeI CTAG 2 cut(s) 377, 444
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 47, 163, 408, 660
MboI GATC 4 cut(s) 45, 161, 406, 658
MboII GAAGA 6 cut(s) 86, 120, 248, 321, 597, 784
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 4 cut(s) 138, 532, 741, 798
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 3 cut(s) 174, 718, 807
Mox20I TGGCCA 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 776
MscI TGGCCA 1 cut(s) 224
MseI TTAA 4 cut(s) 87, 513, 548, 645
MslI CAYNNNNRTG 2 cut(s) 672, 696
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 2 cut(s) 220, 287
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 2 cut(s) 147, 201
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 6 cut(s) 60, 182, 284, 320, 337, 683
NdeII GATC 4 cut(s) 45, 161, 406, 658
NlaIII CATG 3 cut(s) 459, 671, 695
NlaIV GGNNCC 2 cut(s) 259, 727
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 695
NspV TTCGAA 2 cut(s) 420, 790
PaeR7I CTCGAG 1 cut(s) 560
PciI ACATGT 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 5 cut(s) 65, 68, 122, 219, 652
Ple19I CGATCG 1 cut(s) 164
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PscI ACATGT 1 cut(s) 691
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 259, 727
PspPI GGNCC 1 cut(s) 726
PspXI VCTCGAGB 1 cut(s) 560
PvuI CGATCG 1 cut(s) 164
PvuII CAGCTG 2 cut(s) 220, 287
RsaI GTAC 3 cut(s) 437, 492, 690
RsaNI GTAC 3 cut(s) 436, 491, 689
RseI CAYNNNNRTG 2 cut(s) 672, 696
SapI GCTCTTC 1 cut(s) 304
SaqAI TTAA 4 cut(s) 87, 513, 548, 645
SatI GCNGC 5 cut(s) 64, 67, 121, 218, 651
Sau3AI GATC 4 cut(s) 45, 161, 406, 658
Sau96I GGNCC 1 cut(s) 726
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 350
SfaNI GCATC 5 cut(s) 493, 580, 589, 622, 664
Sfr274I CTCGAG 1 cut(s) 560
SfuI TTCGAA 2 cut(s) 420, 790
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 672, 696
SmlI CTYRAG 3 cut(s) 497, 547, 560
SmoI CTYRAG 3 cut(s) 497, 547, 560
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 4 cut(s) 138, 532, 741, 798
SsiI CCGC 3 cut(s) 63, 544, 671
SspMI CTAG 2 cut(s) 377, 444
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 26, 269
TaiI ACGT 1 cut(s) 429
TaqI TCGA 5 cut(s) 234, 420, 530, 561, 790
TasI AATT 4 cut(s) 138, 532, 741, 798
TatI WGTACW 2 cut(s) 435, 688
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 87, 513, 548, 645
Tru9I TTAA 4 cut(s) 87, 513, 548, 645
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 4 cut(s) 66, 120, 217, 650
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 5 cut(s) 17, 86, 444, 495, 720
TspRI CASTG 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 547
XapI RAATTY 2 cut(s) 532, 798
XceI RCATGY 1 cut(s) 695
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 2 cut(s) 377, 444
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.