Rh5CG027800
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006162
Physical Location & Seq
Reverse (-)
1734074 .. 1734798
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG027800.1

Sequence Viewer

Length: 624 bp
ATGGATGATCGTTCTAAAAATGGATTCACTGCTCACCAGATAGGCCAGTTGTACCATTTGGTCCATGAACATGTGCAGCTGCTTATTCAAGTATTTTCTCTGTGTGTACTTGATAACTCCAGGCAACATTTTGCCTCTCAGGTTCAGAGATTGATCTGTGAGATGCTCCACAAGCATGATGAAGTACTGGCATGGAAAAATGTACCATATCCAAACATTTGCTTTTGCCCATCAATGCCAACTGAAACACCTCAATCCTACCCGATACAAAGCACTTTAGTGTCATCCCACACATCTGATGCGCATGCAGCGTCTTCTCCTTCCAATAAGCAGATGTTAGTTTCCCCAAATGTCTCTCCTTTCTGGGTCCCTTCTGTAAATGGCCCTGTGCTATCTGTCCTGGATGTAGCTCCACTTAGTTTGATTGGGAGATACATGGATGATATTGATACTGCTGTCCAGGGGAATCGACGGCGTTTCAAGGAAACTATTTCTGATATTTGCCTTGAAAAAGAGCCTTTGCTTCCCCTTCCTAACTTCCCATCATGTGCTCAAGCCAACTGTGAAGTTGTAAGTGGGATGGGTTCCTCAGCTGTCAATGTGGTTCCATCTTCACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

207

Amino Acids

22.81

Weight (kDa)

5.94

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
AfaI GTAC 4 cut(s) 53, 108, 186, 204
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 89, 481, 509
AjnI CCWGG 3 cut(s) 119, 399, 459
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 3 cut(s) 79, 410, 593
AluI AGCT 3 cut(s) 79, 410, 593
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 358
AoxI GGCC 2 cut(s) 43, 382
ApeKI GCWGC 3 cut(s) 76, 79, 308
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 61, 367, 383
AsuHPI GGTGA 2 cut(s) 26, 606
AvaII GGWCC 2 cut(s) 61, 367
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 553
BbvCI CCTCAGC 1 cut(s) 589
BbvI GCAGC 3 cut(s) 66, 88, 320
BccI CCATC 4 cut(s) 238, 550, 574, 616
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 3 cut(s) 121, 401, 461
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 618
BisI GCNGC 3 cut(s) 77, 80, 309
BlsI GCNGC 3 cut(s) 78, 81, 310
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 3 cut(s) 121, 401, 461
Bme18I GGWCC 2 cut(s) 61, 367
BmgT120I GGNCC 3 cut(s) 61, 367, 383
BmiI GGNNCC 4 cut(s) 368, 369, 586, 606
BmrFI CCNGG 3 cut(s) 121, 401, 461
BmsI GCATC 2 cut(s) 153, 289
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 46, 192
BseBI CCWGG 3 cut(s) 121, 401, 461
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 5 cut(s) 10, 284, 409, 445, 585
BseMII CTCAG 2 cut(s) 152, 603
BseNI ACTGG 2 cut(s) 46, 192
BseXI GCAGC 3 cut(s) 66, 88, 320
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 2 cut(s) 45, 384
BsiHKAI GWGCWC 1 cut(s) 553
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 2 cut(s) 45, 384
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 7, 153
BspANI GGCC 2 cut(s) 45, 384
BspCNI CTCAG 2 cut(s) 151, 602
BspLI GGNNCC 4 cut(s) 368, 369, 586, 606
BsrI ACTGG 2 cut(s) 46, 192
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 2 cut(s) 7, 153
Bst2UI CCWGG 3 cut(s) 121, 401, 461
Bst4CI ACNGT 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 138, 416, 589
BstF5I GGATG 5 cut(s) 10, 284, 409, 445, 585
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 10, 156
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 7, 153
BstMWI GCNNNNNNNGC 2 cut(s) 172, 308
BstNI CCWGG 3 cut(s) 121, 401, 461
BstNSI RCATGY 2 cut(s) 74, 308
BstSCI CCNGG 3 cut(s) 119, 399, 459
BstV1I GCAGC 3 cut(s) 66, 88, 320
BstV2I GAAGAC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 45, 384
BtsCI GGATG 5 cut(s) 10, 284, 409, 445, 585
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 61, 367, 383
CseI GACGC 1 cut(s) 300
Csp6I GTAC 4 cut(s) 52, 107, 185, 203
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 7 cut(s) 65, 71, 176, 192, 305, 436, 546
CviJI RGCY 7 cut(s) 45, 79, 384, 410, 517, 557, 593
CviKI_1 RGCY 7 cut(s) 45, 79, 384, 410, 517, 557, 593
CviQI GTAC 4 cut(s) 52, 107, 185, 203
DdeI CTNAG 3 cut(s) 138, 416, 589
DpnI GATC 2 cut(s) 9, 155
DpnII GATC 2 cut(s) 7, 153
Eco47I GGWCC 2 cut(s) 61, 367
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 119, 399, 459
FaeI CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
FaiI YATR 8 cut(s) 66, 72, 177, 193, 208, 306, 437, 547
FaqI GGGAC 1 cut(s) 353
FatI CATG 7 cut(s) 64, 70, 175, 191, 304, 435, 545
Fnu4HI GCNGC 3 cut(s) 77, 80, 309
FokI GGATG 5 cut(s) 17, 271, 416, 452, 592
Fsp4HI GCNGC 3 cut(s) 77, 80, 309
FspAI RTGCGCAY 1 cut(s) 303
FspBI CTAG 1 cut(s) 618
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
GluI GCNGC 3 cut(s) 77, 80, 309
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 2 cut(s) 45, 384
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 304
Hin1II CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 2 cut(s) 24, 466
HphI GGTGA 2 cut(s) 26, 606
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 3 cut(s) 147, 298, 496
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 3 cut(s) 330, 381, 539
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4V TGCA 2 cut(s) 76, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 308
HpyF3I CTNAG 3 cut(s) 138, 416, 589
Hsp92II CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
HspAI GCGC 1 cut(s) 302
KflI GGGWCCC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 7, 153
LmnI GCTCC 2 cut(s) 171, 415
Lsp1109I GCAGC 3 cut(s) 66, 88, 320
LweI GCATC 2 cut(s) 153, 289
MaeI CTAG 1 cut(s) 618
MalI GATC 2 cut(s) 9, 155
MboI GATC 2 cut(s) 7, 153
MboII GAAGA 2 cut(s) 306, 603
MhlI GDGCHC 1 cut(s) 553
MnlI CCTC 3 cut(s) 145, 261, 598
MseI TTAA 1 cut(s) 622
MslI CAYNNNNRTG 3 cut(s) 69, 174, 278
MspA1I CMGCKG 2 cut(s) 79, 593
MspR9I CCNGG 3 cut(s) 121, 401, 461
MvaI CCWGG 3 cut(s) 121, 401, 461
MwoI GCNNNNNNNGC 2 cut(s) 172, 308
NdeII GATC 2 cut(s) 7, 153
NlaIII CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
NlaIV GGNNCC 4 cut(s) 368, 369, 586, 606
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 2 cut(s) 74, 308
OliI CACNNNNGTG 1 cut(s) 278
PaeI GCATGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 2 cut(s) 24, 466
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 3 cut(s) 78, 81, 310
PpuMI RGGWCCY 1 cut(s) 367
PscI ACATGT 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 3 cut(s) 119, 399, 459
PspGI CCWGG 3 cut(s) 119, 399, 459
PspN4I GGNNCC 4 cut(s) 368, 369, 586, 606
PspPI GGNCC 3 cut(s) 61, 367, 383
PspPPI RGGWCCY 1 cut(s) 367
PvuII CAGCTG 2 cut(s) 79, 593
RsaI GTAC 4 cut(s) 53, 108, 186, 204
RsaNI GTAC 4 cut(s) 52, 107, 185, 203
RseI CAYNNNNRTG 3 cut(s) 69, 174, 278
SaqAI TTAA 1 cut(s) 622
SatI GCNGC 3 cut(s) 77, 80, 309
Sau3AI GATC 2 cut(s) 7, 153
Sau96I GGNCC 3 cut(s) 61, 367, 383
ScaI AGTACT 1 cut(s) 186
ScrFI CCNGG 3 cut(s) 121, 401, 461
SduI GDGCHC 1 cut(s) 553
SetI ASST 6 cut(s) 81, 144, 253, 412, 595, 619
SfaNI GCATC 2 cut(s) 153, 289
SinI GGWCC 2 cut(s) 61, 367
SmiMI CAYNNNNRTG 3 cut(s) 69, 174, 278
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SphI GCATGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 3 cut(s) 119, 399, 459
TaaI ACNGT 1 cut(s) 563
TaqI TCGA 1 cut(s) 469
TatI WGTACW 2 cut(s) 106, 184
TfiI GAWTC 2 cut(s) 24, 466
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 1 cut(s) 34
TseI GCWGC 3 cut(s) 76, 79, 308
TspDTI ATGAA 2 cut(s) 81, 195
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 61, 367
XceI RCATGY 2 cut(s) 74, 308
XspI CTAG 1 cut(s) 618
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.