RchiOBHm_Chr5g0003031
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006162
Physical Location & Seq
Reverse (-)
1786286 .. 1790179
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28436

Sequence Viewer

Length: 843 bp
ATGAACGTGTGCAGCTGCTTATTCAAGTATTTTCTCTGTGTACTTGATAACTCCAGGCAACATGTTGCCTCTCAGGTTCGGAGATTGATCTGTGAGATGCTCCACAAACGTGATGAAGTACTGGCATGGAAAAATGTACCATATCCAAATATTTGCTTTTGCCCATCAATGCCAACTGAAACACCTCAATCCTACCCGATACAAAGCACTTTAGTGTCATCCCACACATCTGATGCGCATGCAGCGTCTTCTCCTTCCAATAAGCAGATGTTAGTTTCCCCAAATGTCTCTCCTTTCTGGGTGCCTTCTGTAAATGGCCCTGTGCTATCTGTCCTGGATGTAGCTCCACTTAGCTTGATTGGGAGATACATGGATGATATTGATACTGCTGTCCAGGGGAATCGATGGCGTTTCAAGGAAACTATTTCTGATATTTGCCTTGAAAAAGAGCCTTTGTTTCCCCTTCCTAACTTCCCATCATGTGCTCAAGCCTGTGAAGTTGTAAGTGGGATGGGTTCCTCAGCTGTCAATGTGGTTCCATCTTCACCTAGTCAACCACCAAAGAAGTCACTGGCTACAGCAATTGTTGAAAGTACCAAGAAGCAATCAAGTGCTTTAGTCCCAAGGGAAATCGCAAACTTGGCCCAGAGATTTTATCCTCTGTTCAATCCAGCATTATATCCCCATAAGCCACCCCGCGCCCCCCTGCAGCTGTCACATCGGGTGCTTTACACTGATGCAGAAGATGAGTTATTAGCATTGGGGTTAATGGAATATAATACTGATTGGAAGGCAATCCAACAACGTTTTCTTCCTTGCAAATCTAAGCACCAGTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

280

Amino Acids

31.2

Weight (kDa)

8.26

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 301
AccII CGCG 1 cut(s) 699
AciI CCGC 1 cut(s) 697
AclI AACGTT 1 cut(s) 805
AfaI GTAC 4 cut(s) 42, 120, 138, 595
AflIII ACRYGT 2 cut(s) 6, 61
AgsI TTSAA 5 cut(s) 25, 415, 443, 590, 667
AjnI CCWGG 3 cut(s) 53, 333, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
AleI CACNNNNGTG 2 cut(s) 108, 212
AluBI AGCT 5 cut(s) 15, 344, 354, 524, 712
AluI AGCT 5 cut(s) 15, 344, 354, 524, 712
Alw21I GWGCWC 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 292
AlwNI CAGNNNCTG 1 cut(s) 838
AoxI GGCC 2 cut(s) 316, 642
ApeKI GCWGC 4 cut(s) 12, 15, 242, 709
AspLEI GCGC 2 cut(s) 238, 701
AspS9I GGNCC 2 cut(s) 317, 643
AsuHPI GGTGA 1 cut(s) 537
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BanI GGYRCC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 487
BbvCI CCTCAGC 1 cut(s) 520
BbvI GCAGC 4 cut(s) 2, 24, 254, 721
BccI CCATC 5 cut(s) 172, 399, 484, 505, 547
BciT130I CCWGG 3 cut(s) 55, 335, 395
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 3 cut(s) 576, 707, 839
BisI GCNGC 4 cut(s) 13, 16, 243, 710
BlsI GCNGC 4 cut(s) 14, 17, 244, 711
BmcAI AGTACT 1 cut(s) 120
Bme1390I CCNGG 3 cut(s) 55, 335, 395
BmgT120I GGNCC 2 cut(s) 317, 643
BmiI GGNNCC 3 cut(s) 303, 517, 537
BmrFI CCNGG 3 cut(s) 55, 335, 395
BmsI GCATC 3 cut(s) 87, 223, 727
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 471
Bsa29I ATCGAT 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 394, 623
Bse1I ACTGG 3 cut(s) 126, 576, 832
BseBI CCWGG 3 cut(s) 55, 335, 395
BseCI ATCGAT 1 cut(s) 403
BseDI CCNNGG 2 cut(s) 394, 623
BseGI GGATG 4 cut(s) 218, 343, 379, 516
BseMII CTCAG 2 cut(s) 86, 534
BseNI ACTGG 3 cut(s) 126, 576, 832
BseXI GCAGC 4 cut(s) 2, 24, 254, 721
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 699
BshFI GGCC 2 cut(s) 318, 644
BshNI GGYRCC 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 487
BslFI GGGAC 1 cut(s) 605
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 2 cut(s) 318, 644
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 697
BspANI GGCC 2 cut(s) 318, 644
BspCNI CTCAG 2 cut(s) 85, 533
BspDI ATCGAT 1 cut(s) 403
BspFNI CGCG 1 cut(s) 699
BspLI GGNNCC 3 cut(s) 303, 517, 537
BspMAI CTGCAG 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 3 cut(s) 126, 576, 832
BssECI CCNNGG 2 cut(s) 394, 623
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 623
Bst2UI CCWGG 3 cut(s) 55, 335, 395
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 4 cut(s) 72, 350, 520, 825
BstF5I GGATG 4 cut(s) 218, 343, 379, 516
BstFNI CGCG 1 cut(s) 699
BstHHI GCGC 2 cut(s) 238, 701
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 242, 641
BstNI CCWGG 3 cut(s) 55, 335, 395
BstNSI RCATGY 2 cut(s) 65, 242
BstSCI CCNGG 3 cut(s) 53, 333, 393
BstSFI CTRYAG 3 cut(s) 576, 707, 839
BstUI CGCG 1 cut(s) 699
BstV1I GCAGC 4 cut(s) 2, 24, 254, 721
BstV2I GAAGAC 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 403
BsuRI GGCC 2 cut(s) 318, 644
BsuTUI ATCGAT 1 cut(s) 403
BtsCI GGATG 4 cut(s) 218, 343, 379, 516
BtsIMutI CAGTG 3 cut(s) 569, 732, 839
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 838
CfoI GCGC 2 cut(s) 238, 701
Cfr13I GGNCC 2 cut(s) 317, 643
ClaI ATCGAT 1 cut(s) 403
CseI GACGC 1 cut(s) 234
Csp6I GTAC 4 cut(s) 41, 119, 137, 594
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 5 cut(s) 62, 126, 239, 370, 480
CviQI GTAC 4 cut(s) 41, 119, 137, 594
DdeI CTNAG 4 cut(s) 72, 350, 520, 825
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 623
EcoRII CCWGG 3 cut(s) 53, 333, 393
EcoT14I CCWWGG 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 5 cut(s) 65, 129, 242, 373, 483
FaiI YATR 9 cut(s) 63, 127, 142, 240, 371, 481, 679, 687, 777
FaqI GGGAC 1 cut(s) 605
FatI CATG 5 cut(s) 61, 125, 238, 369, 479
FauI CCCGC 1 cut(s) 704
Fnu4HI GCNGC 4 cut(s) 13, 16, 243, 710
FokI GGATG 4 cut(s) 205, 350, 386, 523
Fsp4HI GCNGC 4 cut(s) 13, 16, 243, 710
FspAI RTGCGCAY 1 cut(s) 237
FspBI CTAG 1 cut(s) 549
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 2 cut(s) 237, 700
GluI GCNGC 4 cut(s) 13, 16, 243, 710
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 2 cut(s) 318, 644
HgaI GACGC 1 cut(s) 234
HhaI GCGC 2 cut(s) 238, 701
Hin1II CATG 5 cut(s) 65, 129, 242, 373, 483
Hin6I GCGC 2 cut(s) 236, 699
HinP1I GCGC 2 cut(s) 236, 699
HincII GTYRAC 1 cut(s) 554
HindII GTYRAC 1 cut(s) 554
HinfI GANTC 1 cut(s) 400
HphI GGTGA 1 cut(s) 537
Hpy166II GTNNAC 2 cut(s) 41, 554
Hpy188I TCNGA 3 cut(s) 81, 232, 430
Hpy8I GTNNAC 2 cut(s) 41, 554
HpyAV CCTTC 4 cut(s) 264, 315, 473, 784
HpyCH4IV ACGT 3 cut(s) 6, 109, 805
HpyCH4V TGCA 5 cut(s) 12, 242, 709, 740, 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 641
HpyF3I CTNAG 4 cut(s) 72, 350, 520, 825
HpySE526I ACGT 3 cut(s) 6, 109, 805
Hsp92II CATG 5 cut(s) 65, 129, 242, 373, 483
HspAI GCGC 2 cut(s) 236, 699
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 105, 349
Lsp1109I GCAGC 4 cut(s) 2, 24, 254, 721
LweI GCATC 3 cut(s) 87, 223, 727
MaeI CTAG 1 cut(s) 549
MaeII ACGT 3 cut(s) 6, 109, 805
MaeIII GTNAC 2 cut(s) 567, 714
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 4 cut(s) 240, 534, 755, 803
MfeI CAATTG 1 cut(s) 582
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 823
MnlI CCTC 4 cut(s) 79, 195, 529, 669
MseI TTAA 1 cut(s) 767
MslI CAYNNNNRTG 2 cut(s) 108, 212
MspA1I CMGCKG 3 cut(s) 15, 524, 712
MspR9I CCNGG 3 cut(s) 55, 335, 395
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 3 cut(s) 55, 335, 395
MvnI CGCG 1 cut(s) 699
MwoI GCNNNNNNNGC 2 cut(s) 242, 641
NdeII GATC 1 cut(s) 87
NlaIII CATG 5 cut(s) 65, 129, 242, 373, 483
NlaIV GGNNCC 3 cut(s) 303, 517, 537
NmuCI GTSAC 2 cut(s) 567, 714
NsbI TGCGCA 1 cut(s) 237
NspI RCATGY 2 cut(s) 65, 242
OliI CACNNNNGTG 2 cut(s) 108, 212
PaeI GCATGC 1 cut(s) 242
PciI ACATGT 1 cut(s) 61
PfeI GAWTC 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 4 cut(s) 14, 17, 244, 711
PscI ACATGT 1 cut(s) 61
Psp1406I AACGTT 1 cut(s) 805
Psp6I CCWGG 3 cut(s) 53, 333, 393
PspGI CCWGG 3 cut(s) 53, 333, 393
PspN4I GGNNCC 3 cut(s) 303, 517, 537
PspPI GGNCC 2 cut(s) 317, 643
PstI CTGCAG 1 cut(s) 711
PstNI CAGNNNCTG 1 cut(s) 838
PvuII CAGCTG 3 cut(s) 15, 524, 712
RsaI GTAC 4 cut(s) 42, 120, 138, 595
RsaNI GTAC 4 cut(s) 41, 119, 137, 594
RseI CAYNNNNRTG 2 cut(s) 108, 212
SaqAI TTAA 1 cut(s) 767
SatI GCNGC 4 cut(s) 13, 16, 243, 710
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 317, 643
ScaI AGTACT 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 55, 335, 395
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 3 cut(s) 87, 223, 727
SfcI CTRYAG 3 cut(s) 576, 707, 839
SmiMI CAYNNNNRTG 2 cut(s) 108, 212
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
SphI GCATGC 1 cut(s) 242
Sse9I AATT 1 cut(s) 582
SsiI CCGC 1 cut(s) 697
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 53, 333, 393
StyI CCWWGG 1 cut(s) 623
TaiI ACGT 3 cut(s) 9, 112, 808
TaqI TCGA 1 cut(s) 403
TasI AATT 1 cut(s) 582
TatI WGTACW 2 cut(s) 40, 118
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 1 cut(s) 767
Tru9I TTAA 1 cut(s) 767
TscAI CASTG 3 cut(s) 576, 739, 839
TseFI GTSAC 2 cut(s) 567, 714
TseI GCWGC 4 cut(s) 12, 15, 242, 709
Tsp45I GTSAC 2 cut(s) 567, 714
TspDTI ATGAA 2 cut(s) 17, 129
TspRI CASTG 3 cut(s) 576, 739, 839
XceI RCATGY 2 cut(s) 65, 242
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.