Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006162

Physical Location & Seq

Genomic Coordinates Forward (+)

46617692 .. 46618911

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1347200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCAAAGAACTGATTATGTAAGTAGTGCCAAAGTAACAACATGCTCAACTGCACCCCTTTCTGCTGGTTCAGGGGGAAACCGTTCTCAAGACCAATATCCTTGTGATACTGGTTCAACTCAGTTGTCGGTCAATGCTGATCCACAGGCTATGGGCACTAATGAGAGAGCTAATGAACTGGACTTGGAGATCCACCTAAGTTCTACATCTAAAAAGGAAAAAGCTTCAAAAAGGAGAGATGTCACTGTTAATAATTCAGTTAAATCAAGAATAATGGCTCCAGAAAAGACAACTCAATGTCCTAATGGTTCATTGCTTCGGCAGGCTGAAAGTTCTTCAGCTCGTGGTAGCGAGCTTGTTGTACCAAGTAATAATATTAGCAGGTACAAAGTAGATGATACAGGTGACCAGTCCCAACCTGATATTCAGATGGAACAGGAAGAGTTGAGCGACTCTGATGAAGAAAATGAAGAAAATGTTGAGTTTGAGTGTGAGGAGATGACTGATTCTGAAGGAGAGGGGGGATCGGCGTGTGAAGAAATATTTGAGATGCAGAATAAGGATGTTCCATCGTTTGCAATGAAAAGACCTGCAACAGCAGATCTTGATGGCAAGGAGTGTGAGCCAAAAGCCACTTATCGTCCTCAGGACAATATTCACAGAATTCCTTACTTGGACGATGCCAGTAATTCTTCATGGTTAAGTTTGGATTCGTGCGCGCCAGATCACCCTTTGCGCATTATGTCCAAGTATGACGAAAGTACAATGGACAGCAGTTTTGCTGCCAAAGACTTGCAGTCATCTTGGCCTGCTCGGTCTTGTAAGAAGGCAAAACTGAGCACAAGGGGAGGTGCAACGCAGAAACAAGCGGTGGACATGACGCACCAACTGAGCCTGGGTCCTCCATCAAATCCGACGGTGAGCAAACCCAGGAAGCGTGTATCGGGATCGAGTACATGTTTGAACATAGGAATGACTGTAGAAAACTCCGGCAGTGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6

Protein Analysis

335

Amino Acids

36.32

Weight (kDa)

4.8

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64570
fragaria_vesca	FvH4_3g02070
malus_domestica	MD05G1346800.v1.1 MD05G1347100.v1.1 MD05G1347200.v1.1 MD10G1321400.v1.1
prunus_persica	Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1
pyrus_communis	pycom05g31490 pycom10g27210
rosa_chinensis	RchiOBHm_Chr5g0002971 RchiOBHm_Chr5g0003031 RchiOBHm_Chr5g0003091
rosa_laevigata	RLG00000031075
rosa_multiflora	Rmu_sc0000146.1_g000022 Rmu_sc0013603.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072910
rosa_rugosa	Rorug04G0400900
rosa_samantha	Rh5AG024000 Rh5AG025000 Rh5BG026700 Rh5CG026800 Rh5CG027800 Rh5DG025300
rosa_wichuraiana	Rw5G002270 Rw5G002320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	737
Acc36I	ACCTGC	2 cut(s)	372, 598
AccII	CGCG	1 cut(s)	719
AciI	CCGC	1 cut(s)	869
AclWI	GGATC	4 cut(s)	134, 184, 532, 955
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	2 cut(s)	321, 531
AfaI	GTAC	4 cut(s)	363, 386, 763, 955
AflIII	ACRYGT	1 cut(s)	956
AgsI	TTSAA	3 cut(s)	117, 228, 964
AhdI	GACNNNNNGTC	1 cut(s)	796
AjnI	CCWGG	2 cut(s)	894, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	4 cut(s)	170, 224, 341, 355
AluI	AGCT	4 cut(s)	170, 224, 341, 355
Alw21I	GWGCWC	1 cut(s)	842
AlwI	GGATC	4 cut(s)	134, 184, 532, 955
AoxI	GGCC	1 cut(s)	806
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	1 cut(s)	663
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
Asp700I	GAANNNNTTC	1 cut(s)	82
AspLEI	GCGC	3 cut(s)	719, 721, 738
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	3 cut(s)	416, 719, 931
AvaII	GGWCC	1 cut(s)	899
AxyI	CCTNAGG	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	5 cut(s)	424, 577, 602, 913, 992
BciT130I	CCWGG	2 cut(s)	896, 931
BfmI	CTRYAG	1 cut(s)	978
BfuAI	ACCTGC	2 cut(s)	372, 598
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	2 cut(s)	896, 931
Bme18I	GGWCC	1 cut(s)	899
BmeRI	GACNNNNNGTC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	2 cut(s)	279, 900
BmrFI	CCNGG	2 cut(s)	896, 931
BmsI	GCATC	2 cut(s)	540, 670
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	895, 929
Bse1I	ACTGG	4 cut(s)	115, 183, 409, 684
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	2 cut(s)	311, 585
BseBI	CCWGG	2 cut(s)	896, 931
BseDI	CCNNGG	2 cut(s)	895, 929
BseGI	GGATG	1 cut(s)	568
BseMI	GCAATG	2 cut(s)	311, 585
BseMII	CTCAG	4 cut(s)	134, 659, 827, 881
BseNI	ACTGG	4 cut(s)	115, 183, 409, 684
BsePI	GCGCGC	1 cut(s)	717
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	1 cut(s)	990
BslFI	GGGAC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	808
Bsp1286I	GDGCHC	2 cut(s)	158, 842
Bsp143I	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	4 cut(s)	133, 658, 828, 882
BspFNI	CGCG	1 cut(s)	719
BspLI	GGNNCC	2 cut(s)	279, 900
BspMI	ACCTGC	2 cut(s)	372, 598
BspPI	GGATC	4 cut(s)	134, 184, 532, 955
BsrDI	GCAATG	2 cut(s)	311, 585
BsrI	ACTGG	4 cut(s)	115, 183, 409, 684
BssECI	CCNNGG	2 cut(s)	895, 929
BssHII	GCGCGC	1 cut(s)	717
BssMI	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	896, 931
Bst4CI	ACNGT	4 cut(s)	83, 247, 919, 979
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	324, 353, 719, 810
BstDEI	CTNAG	5 cut(s)	120, 197, 645, 836, 890
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	3 cut(s)	719, 721, 738
BstKTI	GATC	6 cut(s)	142, 192, 527, 604, 727, 950
BstMBI	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
BstMWI	GCNNNNNNNGC	1 cut(s)	999
BstNI	CCWGG	2 cut(s)	896, 931
BstNSI	RCATGY	2 cut(s)	45, 960
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	894, 929
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	1 cut(s)	769
BstX2I	RGATCY	2 cut(s)	189, 601
BstYI	RGATCY	2 cut(s)	189, 601
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	808
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	1000
BtsIMutI	CAGTG	2 cut(s)	243, 1000
BveI	ACCTGC	2 cut(s)	372, 598
Cac8I	GCNNGC	4 cut(s)	324, 353, 719, 810
CfoI	GCGC	3 cut(s)	719, 721, 738
Cfr13I	GGNCC	1 cut(s)	899
CseI	GACGC	1 cut(s)	889
Csp6I	GTAC	4 cut(s)	362, 385, 762, 954
CviAII	CATG	4 cut(s)	42, 696, 877, 957
CviQI	GTAC	4 cut(s)	362, 385, 762, 954
DdeI	CTNAG	5 cut(s)	120, 197, 645, 836, 890
DpnI	GATC	6 cut(s)	141, 191, 526, 603, 726, 949
DpnII	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
DriI	GACNNNNNGTC	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	435
Eam1105I	GACNNNNNGTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	899
Eco57I	CTGAAG	2 cut(s)	321, 531
Eco81I	CCTNAGG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	899
EcoO65I	GGTNACC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	894, 929
FaeI	CATG	4 cut(s)	45, 699, 880, 960
FaiI	YATR	9 cut(s)	18, 43, 152, 697, 743, 753, 878, 958, 968
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	4 cut(s)	41, 695, 876, 956
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	1 cut(s)	783
FspI	TGCGCA	1 cut(s)	737
GlaI	GCGC	3 cut(s)	718, 720, 737
GluI	GCNGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	808
HapII	CCGG	1 cut(s)	990
HgaI	GACGC	1 cut(s)	889
HhaI	GCGC	3 cut(s)	719, 721, 738
Hin1II	CATG	4 cut(s)	45, 699, 880, 960
Hin6I	GCGC	3 cut(s)	717, 719, 736
HinP1I	GCGC	3 cut(s)	717, 719, 736
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	3 cut(s)	452, 506, 710
HpaII	CCGG	1 cut(s)	990
HphI	GGTGA	3 cut(s)	416, 719, 931
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	4 cut(s)	429, 457, 511, 915
Hpy188III	TCNNGA	6 cut(s)	89, 267, 281, 605, 647, 945
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	1 cut(s)	919
HpyAV	CCTTC	2 cut(s)	506, 820
HpyCH4III	ACNGT	4 cut(s)	83, 247, 919, 979
HpyCH4V	TGCA	7 cut(s)	4, 53, 553, 578, 593, 796, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	999
HpyF3I	CTNAG	5 cut(s)	120, 197, 645, 836, 890
Hsp92II	CATG	4 cut(s)	45, 699, 880, 960
HspAI	GCGC	3 cut(s)	717, 719, 736
Kzo9I	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	2 cut(s)	540, 670
MaeIII	GTNAC	3 cut(s)	34, 241, 404
MalI	GATC	6 cut(s)	141, 191, 526, 603, 726, 949
MboI	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
MboII	GAAGA	6 cut(s)	327, 452, 473, 482, 548, 684
MflI	RGATCY	2 cut(s)	189, 601
MhlI	GDGCHC	2 cut(s)	158, 842
MluCI	AATT	3 cut(s)	253, 663, 688
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	938
MnlI	CCTC	5 cut(s)	487, 511, 654, 842, 912
MroXI	GAANNNNTTC	1 cut(s)	82
MseI	TTAA	3 cut(s)	249, 261, 701
MslI	CAYNNNNRTG	1 cut(s)	971
MspI	CCGG	1 cut(s)	990
MspR9I	CCNGG	2 cut(s)	896, 931
MvaI	CCWGG	2 cut(s)	896, 931
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	1 cut(s)	999
NdeII	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
NlaIII	CATG	4 cut(s)	45, 699, 880, 960
NlaIV	GGNNCC	2 cut(s)	279, 900
NmuCI	GTSAC	2 cut(s)	241, 404
NsbI	TGCGCA	1 cut(s)	737
NspI	RCATGY	2 cut(s)	45, 960
PauI	GCGCGC	1 cut(s)	717
PciI	ACATGT	1 cut(s)	956
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	506, 710
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PpuMI	RGGWCCY	1 cut(s)	899
PscI	ACATGT	1 cut(s)	956
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	2 cut(s)	894, 929
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	894, 929
PspN4I	GGNNCC	2 cut(s)	279, 900
PspPI	GGNCC	1 cut(s)	899
PspPPI	RGGWCCY	1 cut(s)	899
PsuI	RGATCY	2 cut(s)	189, 601
PteI	GCGCGC	1 cut(s)	717
RsaI	GTAC	4 cut(s)	363, 386, 763, 955
RsaNI	GTAC	4 cut(s)	362, 385, 762, 954
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	3 cut(s)	249, 261, 701
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	6 cut(s)	139, 189, 524, 601, 724, 947
Sau96I	GGNCC	1 cut(s)	899
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	896, 931
SduI	GDGCHC	2 cut(s)	158, 842
SfaNI	GCATC	2 cut(s)	540, 670
SfcI	CTRYAG	1 cut(s)	978
SinI	GGWCC	1 cut(s)	899
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	253, 663, 688
SsiI	CCGC	1 cut(s)	869
SspI	AATATT	3 cut(s)	376, 543, 655
StyD4I	CCNGG	2 cut(s)	894, 929
TaaI	ACNGT	4 cut(s)	83, 247, 919, 979
TaqI	TCGA	1 cut(s)	950
TaqII	GACCGA	2 cut(s)	118, 804
TasI	AATT	3 cut(s)	253, 663, 688
TatI	WGTACW	2 cut(s)	761, 953
TfiI	GAWTC	2 cut(s)	506, 710
Tru1I	TTAA	3 cut(s)	249, 261, 701
Tru9I	TTAA	3 cut(s)	249, 261, 701
TscAI	CASTG	2 cut(s)	250, 1000
TseFI	GTSAC	2 cut(s)	241, 404
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	2 cut(s)	241, 404
TspDTI	ATGAA	6 cut(s)	189, 300, 474, 483, 596, 684
TspRI	CASTG	2 cut(s)	250, 1000
VpaK11BI	GGWCC	1 cut(s)	899
XapI	RAATTY	1 cut(s)	663
XceI	RCATGY	2 cut(s)	45, 960
XmnI	GAANNNNTTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.