No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64570 |
| fragaria_vesca | FvH4_3g02070 |
| malus_domestica | MD05G1346800.v1.1 MD05G1347100.v1.1 MD05G1347200.v1.1 MD10G1321400.v1.1 |
| prunus_persica | Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 |
| pyrus_communis | pycom05g31490 pycom10g27210 |
| rosa_chinensis | RchiOBHm_Chr5g0002971 RchiOBHm_Chr5g0003031 RchiOBHm_Chr5g0003091 |
| rosa_laevigata | RLG00000031075 |
| rosa_multiflora | Rmu_sc0000146.1_g000022 Rmu_sc0013603.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00072910 |
| rosa_rugosa | Rorug04G0400900 |
| rosa_samantha | Rh5AG024000 Rh5AG025000 Rh5BG026700 Rh5CG026800 Rh5CG027800 Rh5DG025300 |
| rosa_wichuraiana | Rw5G002270 Rw5G002320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2049 |
| AarI | CACCTGC | 1 cut(s) | 2309 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 907 |
| AatII | GACGTC | 2 cut(s) | 270, 491 |
| Acc36I | ACCTGC | 2 cut(s) | 2309, 3769 |
| Acc65I | GGTACC | 1 cut(s) | 1387 |
| AccB1I | GGYRCC | 3 cut(s) | 1387, 1954, 2750 |
| AccBSI | CCGCTC | 2 cut(s) | 875, 2129 |
| AccII | CGCG | 1 cut(s) | 3135 |
| AccIII | TCCGGA | 1 cut(s) | 419 |
| AclI | AACGTT | 1 cut(s) | 1888 |
| AclWI | GGATC | 4 cut(s) | 2090, 3062, 3322, 3703 |
| AcoI | YGGCCR | 1 cut(s) | 2064 |
| AcsI | RAATTY | 5 cut(s) | 653, 931, 3451, 3478, 3801 |
| AcuI | CTGAAG | 8 cut(s) | 255, 402, 474, 1284, 2912, 2979, 3648, 3699 |
| AcvI | CACGTG | 2 cut(s) | 542, 3230 |
| AcyI | GRCGYC | 2 cut(s) | 267, 488 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 45, 1061, 2118, 2396, 2963, 3302, 3422, 4074 |
| AflIII | ACRYGT | 5 cut(s) | 387, 430, 539, 1090, 3229 |
| AgeI | ACCGGT | 1 cut(s) | 2435 |
| AhlI | ACTAGT | 1 cut(s) | 3908 |
| AjiI | CACGTC | 1 cut(s) | 388 |
| AjnI | CCWGG | 6 cut(s) | 482, 988, 1419, 2395, 3415, 4067 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1875, 1907 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1615, 1647 |
| Alw21I | GWGCWC | 3 cut(s) | 233, 1295, 2617 |
| Alw26I | GTCTC | 5 cut(s) | 2353, 2683, 2864, 3585, 3967 |
| Alw44I | GTGCAC | 1 cut(s) | 2613 |
| AlwI | GGATC | 4 cut(s) | 2090, 3062, 3322, 3703 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1793, 3677 |
| Aor13HI | TCCGGA | 1 cut(s) | 419 |
| AoxI | GGCC | 5 cut(s) | 1063, 1731, 2064, 2303, 2340 |
| ApaI | GGGCCC | 1 cut(s) | 2307 |
| ApaLI | GTGCAC | 1 cut(s) | 2613 |
| ApeKI | GCWGC | 8 cut(s) | 719, 1096, 1099, 1664, 1667, 1790, 2810, 2994 |
| ApoI | RAATTY | 5 cut(s) | 653, 931, 3451, 3478, 3801 |
| AsiGI | ACCGGT | 1 cut(s) | 2435 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 588, 3805 |
| Asp718I | GGTACC | 1 cut(s) | 1387 |
| AspLEI | GCGC | 5 cut(s) | 1197, 2124, 2862, 3284, 4021 |
| AspS9I | GGNCC | 6 cut(s) | 1403, 1732, 2303, 2304, 3095, 4037 |
| AsuC2I | CCSGG | 4 cut(s) | 1141, 1279, 2113, 2364 |
| AsuII | TTCGAA | 1 cut(s) | 23 |
| AvaII | GGWCC | 3 cut(s) | 1403, 3095, 4037 |
| BaeGI | GKGCMC | 4 cut(s) | 547, 1957, 2307, 2617 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1461, 1494 |
| BanI | GGYRCC | 3 cut(s) | 1387, 1954, 2750 |
| BanII | GRGCYC | 2 cut(s) | 233, 2307 |
| BauI | CACGAG | 1 cut(s) | 3984 |
| BbrPI | CACGTG | 2 cut(s) | 542, 3230 |
| BbsI | GAAGAC | 4 cut(s) | 6, 390, 1005, 1326 |
| Bbv12I | GWGCWC | 3 cut(s) | 233, 1295, 2617 |
| BbvCI | CCTCAGC | 2 cut(s) | 1609, 3042 |
| BbvI | GCAGC | 8 cut(s) | 706, 1086, 1108, 1651, 1679, 1802, 2822, 3006 |
| BceAI | ACGGC | 5 cut(s) | 650, 1011, 1508, 2051, 2959 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1919, 1953 |
| BciT130I | CCWGG | 6 cut(s) | 484, 990, 1421, 2397, 3417, 4069 |
| BciVI | GTATCC | 2 cut(s) | 2481, 3868 |
| BclI | TGATCA | 1 cut(s) | 1570 |
| BcnI | CCSGG | 4 cut(s) | 1141, 1279, 2113, 2364 |
| BcoDI | GTCTC | 5 cut(s) | 2353, 2683, 2864, 3585, 3967 |
| BcuI | ACTAGT | 1 cut(s) | 3908 |
| BfmI | CTRYAG | 4 cut(s) | 1665, 2805, 2992, 4110 |
| BfoI | RGCGCY | 1 cut(s) | 3285 |
| BfuAI | ACCTGC | 2 cut(s) | 2309, 3769 |
| BfuI | GTATCC | 2 cut(s) | 2481, 3868 |
| BglII | AGATCT | 2 cut(s) | 499, 3931 |
| BmcAI | AGTACT | 1 cut(s) | 1206 |
| Bme18I | GGWCC | 3 cut(s) | 1403, 3095, 4037 |
| BmgBI | CACGTC | 1 cut(s) | 388 |
| BmgT120I | GGNCC | 6 cut(s) | 1403, 1732, 2303, 2304, 3095, 4037 |
| BmrI | ACTGGG | 3 cut(s) | 941, 2566, 3432 |
| BmsI | GCATC | 9 cut(s) | 107, 511, 736, 1173, 1810, 2525, 2922, 2944, 3711 |
| BmuI | ACTGGG | 3 cut(s) | 941, 2566, 3432 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2501 |
| BpiI | GAAGAC | 4 cut(s) | 6, 390, 1005, 1326 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2374, 2406 |
| BpmI | CTGGAG | 3 cut(s) | 2520, 2757, 4105 |
| Bpu10I | CCTNAGC | 3 cut(s) | 556, 1609, 3042 |
| Bpu14I | TTCGAA | 1 cut(s) | 23 |
| BpuEI | CTTGAG | 3 cut(s) | 2024, 2539, 2760 |
| BpuMI | CCSGG | 4 cut(s) | 1141, 1279, 2113, 2364 |
| BsaAI | YACGTR | 4 cut(s) | 542, 1568, 2708, 3230 |
| BsaBI | GATNNNNATC | 2 cut(s) | 180, 3147 |
| BsaHI | GRCGYC | 2 cut(s) | 267, 488 |
| BsaI | GGTCTC | 1 cut(s) | 2353 |
| BsaJI | CCNNGG | 6 cut(s) | 989, 1712, 2111, 2307, 2395, 4067 |
| BsaWI | WCCGGW | 3 cut(s) | 419, 2435, 3008 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 302, 332, 1615, 1645, 2350, 2380 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 45, 1061, 2118, 2396, 2963, 3302, 3422, 4074 |
| Bse118I | RCCGGY | 1 cut(s) | 2435 |
| Bse3DI | GCAATG | 1 cut(s) | 911 |
| Bse8I | GATNNNNATC | 2 cut(s) | 180, 3147 |
| BseAI | TCCGGA | 1 cut(s) | 419 |
| BseBI | CCWGG | 6 cut(s) | 484, 990, 1421, 2397, 3417, 4069 |
| BseDI | CCNNGG | 6 cut(s) | 989, 1712, 2111, 2307, 2395, 4067 |
| BseJI | GATNNNNATC | 2 cut(s) | 180, 3147 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 45, 1061, 2118, 2396, 2963, 3302, 3422, 4074 |
| BseMI | GCAATG | 1 cut(s) | 911 |
| BseRI | GAGGAG | 8 cut(s) | 323, 326, 752, 785, 2045, 2412, 2922, 3677 |
| BseSI | GKGCMC | 4 cut(s) | 547, 1957, 2307, 2617 |
| BseXI | GCAGC | 8 cut(s) | 706, 1086, 1108, 1651, 1679, 1802, 2822, 3006 |
| BseYI | CCCAGC | 1 cut(s) | 1786 |
| BsgI | GTGCAG | 2 cut(s) | 1115, 2316 |
| Bsh1236I | CGCG | 1 cut(s) | 3135 |
| BshFI | GGCC | 5 cut(s) | 1065, 1733, 2066, 2305, 2342 |
| BshNI | GGYRCC | 3 cut(s) | 1387, 1954, 2750 |
| BshTI | ACCGGT | 1 cut(s) | 2435 |
| BsiHKAI | GWGCWC | 3 cut(s) | 233, 1295, 2617 |
| BsiSI | CCGG | 8 cut(s) | 209, 420, 1141, 1279, 2113, 2363, 2436, 3009 |
| BslFI | GGGAC | 5 cut(s) | 1006, 2049, 2069, 2725, 3439 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 45, 1061, 2118, 2396, 2963, 3302, 3422, 4074 |
| BsmAI | GTCTC | 5 cut(s) | 2353, 2683, 2864, 3585, 3967 |
| BsmBI | CGTCTC | 1 cut(s) | 3585 |
| BsmFI | GGGAC | 5 cut(s) | 1006, 2049, 2069, 2725, 3439 |
| BsmI | GAATGC | 1 cut(s) | 2770 |
| BsnI | GGCC | 5 cut(s) | 1065, 1733, 2066, 2305, 2342 |
| Bso31I | GGTCTC | 1 cut(s) | 2353 |
| Bsp119I | TTCGAA | 1 cut(s) | 23 |
| Bsp120I | GGGCCC | 1 cut(s) | 2303 |
| Bsp1286I | GDGCHC | 6 cut(s) | 233, 547, 1295, 1957, 2307, 2617 |
| Bsp13I | TCCGGA | 1 cut(s) | 419 |
| Bsp19I | CCATGG | 1 cut(s) | 2307 |
| BspANI | GGCC | 5 cut(s) | 1065, 1733, 2066, 2305, 2342 |
| BspEI | TCCGGA | 1 cut(s) | 419 |
| BspFNI | CGCG | 1 cut(s) | 3135 |
| BspHI | TCATGA | 1 cut(s) | 2335 |
| BspMAI | CTGCAG | 2 cut(s) | 1669, 2996 |
| BspMI | ACCTGC | 2 cut(s) | 2309, 3769 |
| BspPI | GGATC | 4 cut(s) | 2090, 3062, 3322, 3703 |
| BspT104I | TTCGAA | 1 cut(s) | 23 |
| BspT107I | GGYRCC | 3 cut(s) | 1387, 1954, 2750 |
| BspTNI | GGTCTC | 1 cut(s) | 2353 |
| BsrBI | CCGCTC | 2 cut(s) | 875, 2129 |
| BsrDI | GCAATG | 1 cut(s) | 911 |
| BsrFI | RCCGGY | 1 cut(s) | 2435 |
| BssAI | RCCGGY | 1 cut(s) | 2435 |
| BssECI | CCNNGG | 6 cut(s) | 989, 1712, 2111, 2307, 2395, 4067 |
| BssNI | GRCGYC | 2 cut(s) | 267, 488 |
| BssSI | CACGAG | 1 cut(s) | 3984 |
| BssT1I | CCWWGG | 2 cut(s) | 1712, 2307 |
| Bst2BI | CACGAG | 1 cut(s) | 3984 |
| Bst2UI | CCWGG | 6 cut(s) | 484, 990, 1421, 2397, 3417, 4069 |
| Bst4CI | ACNGT | 7 cut(s) | 820, 1302, 1583, 2261, 2294, 3020, 4111 |
| Bst6I | CTCTTC | 8 cut(s) | 117, 129, 159, 636, 2007, 2197, 2862, 3603 |
| BstACI | GRCGYC | 2 cut(s) | 267, 488 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2522, 2941, 3215, 3893 |
| BstBAI | YACGTR | 4 cut(s) | 542, 1568, 2708, 3230 |
| BstBI | TTCGAA | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 547 |
| BstDSI | CCRYGG | 1 cut(s) | 2307 |
| BstEII | GGTNACC | 1 cut(s) | 3572 |
| BstFNI | CGCG | 1 cut(s) | 3135 |
| BstH2I | RGCGCY | 1 cut(s) | 3285 |
| BstHHI | GCGC | 5 cut(s) | 1197, 2124, 2862, 3284, 4021 |
| BstMAI | GTCTC | 5 cut(s) | 2353, 2683, 2864, 3585, 3967 |
| BstNI | CCWGG | 6 cut(s) | 484, 990, 1421, 2397, 3417, 4069 |
| BstNSI | RCATGY | 3 cut(s) | 434, 1094, 3705 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2501 |
| BstPI | GGTNACC | 1 cut(s) | 3572 |
| BstSFI | CTRYAG | 4 cut(s) | 1665, 2805, 2992, 4110 |
| BstSLI | GKGCMC | 4 cut(s) | 547, 1957, 2307, 2617 |
| BstUI | CGCG | 1 cut(s) | 3135 |
| BstV1I | GCAGC | 8 cut(s) | 706, 1086, 1108, 1651, 1679, 1802, 2822, 3006 |
| BstV2I | GAAGAC | 4 cut(s) | 6, 390, 1005, 1326 |
| BstX2I | RGATCY | 4 cut(s) | 499, 2095, 3327, 3931 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2729 |
| BstYI | RGATCY | 4 cut(s) | 499, 2095, 3327, 3931 |
| BsuI | GTATCC | 2 cut(s) | 2481, 3868 |
| BsuRI | GGCC | 5 cut(s) | 1065, 1733, 2066, 2305, 2342 |
| BtgI | CCRYGG | 1 cut(s) | 2307 |
| BtrI | CACGTC | 1 cut(s) | 388 |
| BtsI | GCAGTG | 3 cut(s) | 1047, 2123, 4132 |
| BtsIMutI | CAGTG | 9 cut(s) | 825, 1047, 1260, 1658, 1815, 2123, 2299, 2380, 4132 |
| BveI | ACCTGC | 2 cut(s) | 2309, 3769 |
| Cac8I | GCNNGC | 1 cut(s) | 547 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1793, 3677 |
| CciI | TCATGA | 1 cut(s) | 2335 |
| CfoI | GCGC | 5 cut(s) | 1197, 2124, 2862, 3284, 4021 |
| Cfr10I | RCCGGY | 1 cut(s) | 2435 |
| Cfr13I | GGNCC | 6 cut(s) | 1403, 1732, 2303, 2304, 3095, 4037 |
| CseI | GACGC | 2 cut(s) | 905, 1320 |
| CspAI | ACCGGT | 1 cut(s) | 2435 |
| DraI | TTTAAA | 3 cut(s) | 1036, 2196, 2695 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 907 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 907 |
| EaeI | YGGCCR | 1 cut(s) | 2064 |
| Eam1104I | CTCTTC | 8 cut(s) | 117, 129, 159, 636, 2007, 2197, 2862, 3603 |
| EarI | CTCTTC | 8 cut(s) | 117, 129, 159, 636, 2007, 2197, 2862, 3603 |
| Ecl136II | GAGCTC | 1 cut(s) | 231 |
| Eco130I | CCWWGG | 2 cut(s) | 1712, 2307 |
| Eco147I | AGGCCT | 1 cut(s) | 2342 |
| Eco24I | GRGCYC | 2 cut(s) | 233, 2307 |
| Eco31I | GGTCTC | 1 cut(s) | 2353 |
| Eco32I | GATATC | 2 cut(s) | 2019, 3129 |
| Eco47I | GGWCC | 3 cut(s) | 1403, 3095, 4037 |
| Eco53kI | GAGCTC | 1 cut(s) | 231 |
| Eco57I | CTGAAG | 8 cut(s) | 255, 402, 474, 1284, 2912, 2979, 3648, 3699 |
| Eco72I | CACGTG | 2 cut(s) | 542, 3230 |
| Eco91I | GGTNACC | 1 cut(s) | 3572 |
| EcoICRI | GAGCTC | 1 cut(s) | 231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4037 |
| EcoO65I | GGTNACC | 1 cut(s) | 3572 |
| EcoRI | GAATTC | 2 cut(s) | 3451, 3801 |
| EcoRII | CCWGG | 6 cut(s) | 482, 988, 1419, 2395, 3415, 4067 |
| EcoRV | GATATC | 2 cut(s) | 2019, 3129 |
| EcoT14I | CCWWGG | 2 cut(s) | 1712, 2307 |
| EcoT22I | ATGCAT | 2 cut(s) | 2518, 2937 |
| EcoT38I | GRGCYC | 2 cut(s) | 233, 2307 |
| ErhI | CCWWGG | 2 cut(s) | 1712, 2307 |
| Esp3I | CGTCTC | 1 cut(s) | 3585 |
| FaqI | GGGAC | 5 cut(s) | 1006, 2049, 2069, 2725, 3439 |
| FauI | CCCGC | 2 cut(s) | 554, 1768 |
| FauNDI | CATATG | 2 cut(s) | 2245, 2493 |
| FbaI | TGATCA | 1 cut(s) | 1570 |
| FriOI | GRGCYC | 2 cut(s) | 233, 2307 |
| GlaI | GCGC | 5 cut(s) | 1196, 2123, 2861, 3283, 4020 |
| GsaI | CCCAGC | 1 cut(s) | 1790 |
| GsuI | CTGGAG | 3 cut(s) | 2520, 2757, 4105 |
| HaeII | RGCGCY | 1 cut(s) | 3285 |
| HaeIII | GGCC | 5 cut(s) | 1065, 1733, 2066, 2305, 2342 |
| HapII | CCGG | 8 cut(s) | 209, 420, 1141, 1279, 2113, 2363, 2436, 3009 |
| HgaI | GACGC | 2 cut(s) | 905, 1320 |
| HhaI | GCGC | 5 cut(s) | 1197, 2124, 2862, 3284, 4021 |
| Hin1I | GRCGYC | 2 cut(s) | 267, 488 |
| Hin6I | GCGC | 5 cut(s) | 1195, 2122, 2860, 3282, 4019 |
| HinP1I | GCGC | 5 cut(s) | 1195, 2122, 2860, 3282, 4019 |
| HincII | GTYRAC | 2 cut(s) | 699, 1643 |
| HindII | GTYRAC | 2 cut(s) | 699, 1643 |
| HpaII | CCGG | 8 cut(s) | 209, 420, 1141, 1279, 2113, 2363, 2436, 3009 |
| HpyCH4III | ACNGT | 7 cut(s) | 820, 1302, 1583, 2261, 2294, 3020, 4111 |
| Hsp92I | GRCGYC | 2 cut(s) | 267, 488 |
| HspAI | GCGC | 5 cut(s) | 1195, 2122, 2860, 3282, 4019 |
| Kpn2I | TCCGGA | 1 cut(s) | 419 |
| KpnI | GGTACC | 1 cut(s) | 1391 |
| Ksp22I | TGATCA | 1 cut(s) | 1570 |
| LmnI | GCTCC | 8 cut(s) | 197, 772, 830, 1057, 1191, 1435, 2425, 3418 |
| Lsp1109I | GCAGC | 8 cut(s) | 706, 1086, 1108, 1651, 1679, 1802, 2822, 3006 |
| LweI | GCATC | 9 cut(s) | 107, 511, 736, 1173, 1810, 2525, 2922, 2944, 3711 |
| MaeIII | GTNAC | 8 cut(s) | 448, 1496, 1656, 1795, 2848, 3190, 3572, 3939 |
| MbiI | CCGCTC | 2 cut(s) | 875, 2129 |
| MfeI | CAATTG | 1 cut(s) | 1671 |
| MflI | RGATCY | 4 cut(s) | 499, 2095, 3327, 3931 |
| MhlI | GDGCHC | 6 cut(s) | 233, 547, 1295, 1957, 2307, 2617 |
| MlyI | GAGTC | 6 cut(s) | 232, 1633, 2031, 2511, 2545, 3614 |
| MmeI | TCCRAC | 7 cut(s) | 372, 1906, 2485, 2609, 2761, 2974, 3259 |
| Mph1103I | ATGCAT | 2 cut(s) | 2518, 2937 |
| MroI | TCCGGA | 1 cut(s) | 419 |
| MroXI | GAANNNNTTC | 2 cut(s) | 588, 3805 |
| MspA1I | CMGCKG | 6 cut(s) | 273, 1099, 1475, 1483, 1613, 1793 |
| MspI | CCGG | 8 cut(s) | 209, 420, 1141, 1279, 2113, 2363, 2436, 3009 |
| MunI | CAATTG | 1 cut(s) | 1671 |
| Mva1269I | GAATGC | 1 cut(s) | 2770 |
| MvaI | CCWGG | 6 cut(s) | 484, 990, 1421, 2397, 3417, 4069 |
| MvnI | CGCG | 1 cut(s) | 3135 |
| NciI | CCSGG | 4 cut(s) | 1141, 1279, 2113, 2364 |
| NcoI | CCATGG | 1 cut(s) | 2307 |
| NdeI | CATATG | 2 cut(s) | 2245, 2493 |
| NmuCI | GTSAC | 3 cut(s) | 1656, 1795, 3572 |
| NsiI | ATGCAT | 2 cut(s) | 2518, 2937 |
| NspI | RCATGY | 3 cut(s) | 434, 1094, 3705 |
| NspV | TTCGAA | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 2335 |
| PaqCI | CACCTGC | 1 cut(s) | 2309 |
| PceI | AGGCCT | 1 cut(s) | 2342 |
| PciI | ACATGT | 2 cut(s) | 430, 1090 |
| PctI | GAATGC | 1 cut(s) | 2770 |
| PdmI | GAANNNNTTC | 2 cut(s) | 588, 3805 |
| PfeI | GAWTC | 9 cut(s) | 32, 332, 416, 1044, 1486, 2479, 2653, 3116, 3674 |
| PfoI | TCCNGGA | 1 cut(s) | 1419 |
| PinAI | ACCGGT | 1 cut(s) | 2435 |
| PleI | GAGTC | 6 cut(s) | 231, 1632, 2031, 2510, 2544, 3614 |
| PmaCI | CACGTG | 2 cut(s) | 542, 3230 |
| PmlI | CACGTG | 2 cut(s) | 542, 3230 |
| PpsI | GAGTC | 6 cut(s) | 231, 1632, 2031, 2510, 2544, 3614 |
| Ppu21I | YACGTR | 4 cut(s) | 542, 1568, 2708, 3230 |
| PpuMI | RGGWCCY | 1 cut(s) | 4037 |
| PscI | ACATGT | 2 cut(s) | 430, 1090 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2501 |
| PsiI | TTATAA | 1 cut(s) | 2049 |
| Psp124BI | GAGCTC | 1 cut(s) | 233 |
| Psp1406I | AACGTT | 1 cut(s) | 1888 |
| Psp5II | RGGWCCY | 1 cut(s) | 4037 |
| Psp6I | CCWGG | 6 cut(s) | 482, 988, 1419, 2395, 3415, 4067 |
| PspCI | CACGTG | 2 cut(s) | 542, 3230 |
| PspEI | GGTNACC | 1 cut(s) | 3572 |
| PspFI | CCCAGC | 1 cut(s) | 1786 |
| PspGI | CCWGG | 6 cut(s) | 482, 988, 1419, 2395, 3415, 4067 |
| PspOMI | GGGCCC | 1 cut(s) | 2303 |
| PspPI | GGNCC | 6 cut(s) | 1403, 1732, 2303, 2304, 3095, 4037 |
| PspPPI | RGGWCCY | 1 cut(s) | 4037 |
| PstI | CTGCAG | 2 cut(s) | 1669, 2996 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1793, 3677 |
| PsuI | RGATCY | 4 cut(s) | 499, 2095, 3327, 3931 |
| PvuII | CAGCTG | 3 cut(s) | 1099, 1613, 1793 |
| SacI | GAGCTC | 1 cut(s) | 233 |
| Sau96I | GGNCC | 6 cut(s) | 1403, 1732, 2303, 2304, 3095, 4037 |
| ScaI | AGTACT | 1 cut(s) | 1206 |
| SchI | GAGTC | 6 cut(s) | 232, 1633, 2031, 2511, 2545, 3614 |
| SduI | GDGCHC | 6 cut(s) | 233, 547, 1295, 1957, 2307, 2617 |
| SfaNI | GCATC | 9 cut(s) | 107, 511, 736, 1173, 1810, 2525, 2922, 2944, 3711 |
| SfcI | CTRYAG | 4 cut(s) | 1665, 2805, 2992, 4110 |
| SfuI | TTCGAA | 1 cut(s) | 23 |
| SinI | GGWCC | 3 cut(s) | 1403, 3095, 4037 |
| SmlI | CTYRAG | 3 cut(s) | 2039, 2554, 2775 |
| SmoI | CTYRAG | 3 cut(s) | 2039, 2554, 2775 |
| SpeI | ACTAGT | 1 cut(s) | 3908 |
| SseBI | AGGCCT | 1 cut(s) | 2342 |
| SspI | AATATT | 1 cut(s) | 1237 |
| SstI | GAGCTC | 1 cut(s) | 233 |
| StuI | AGGCCT | 1 cut(s) | 2342 |
| StyI | CCWWGG | 2 cut(s) | 1712, 2307 |
| TaaI | ACNGT | 7 cut(s) | 820, 1302, 1583, 2261, 2294, 3020, 4111 |
| TaqI | TCGA | 8 cut(s) | 5, 23, 221, 679, 877, 2092, 2549, 3654 |
| TatI | WGTACW | 3 cut(s) | 645, 1126, 1204 |
| TauI | GCSGC | 2 cut(s) | 2182, 3138 |
| TfiI | GAWTC | 9 cut(s) | 32, 332, 416, 1044, 1486, 2479, 2653, 3116, 3674 |
| TscAI | CASTG | 9 cut(s) | 825, 1054, 1260, 1665, 1822, 2123, 2299, 2380, 4132 |
| TseFI | GTSAC | 3 cut(s) | 1656, 1795, 3572 |
| TseI | GCWGC | 8 cut(s) | 719, 1096, 1099, 1664, 1667, 1790, 2810, 2994 |
| Tsp45I | GTSAC | 3 cut(s) | 1656, 1795, 3572 |
| TspGWI | ACGGA | 1 cut(s) | 2656 |
| TspRI | CASTG | 9 cut(s) | 825, 1054, 1260, 1665, 1822, 2123, 2299, 2380, 4132 |
| VneI | GTGCAC | 1 cut(s) | 2613 |
| VpaK11BI | GGWCC | 3 cut(s) | 1403, 3095, 4037 |
| XapI | RAATTY | 5 cut(s) | 653, 931, 3451, 3478, 3801 |
| XbaI | TCTAGA | 1 cut(s) | 502 |
| XceI | RCATGY | 3 cut(s) | 434, 1094, 3705 |
| XmnI | GAANNNNTTC | 2 cut(s) | 588, 3805 |
| ZraI | GACGTC | 2 cut(s) | 268, 489 |
| ZrmI | AGTACT | 1 cut(s) | 1206 |
| Zsp2I | ATGCAT | 2 cut(s) | 2518, 2937 |