Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000146.1

Orthogroup ID

OG0006162

Physical Location & Seq

Genomic Coordinates Reverse (-)

65638 .. 66681

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000146.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggatgatcgttctaaaaatggattcactgctcaccagataggccagttgtaccatttggtccatgaacatgtgcagctgcttattcaagtattttctctgtgtgtacttgataactccaggcaacattttgcctctcaggttcagagattgatctgtgagatgctccacaagcgtgatgaagtactggcatggaaaaatgtaccatatccaaacatttgcttttgcccatcaatgccaactgaaacacctcaatcctacccgatacaaagcactttagtgtcatcccacacatctgatgcgcatgcagcgtcttctccttccaataagcagatgttagtttccccaaatgtctctcctttctgggtgccttctgtaaatggccctgtgctatctgtcctggatgtagctccacttagtttgattgggagatacatggatgatattgatactgctgtccaggggaatcgacggcgtttcaaggaaactatttctgatatttgccttgaaaaagagcctttgcttccccttcctaacttcccatcatgtgctcaagccaactgtgaagttgtaagtgggatgggttcctcagctgtcaatgtggttccatcttcacctagtcaaccaccaaagaagtcactggctacagcaattgttgaaagtaccaagaagcaatcaattgctttagtcccaagggaaatcgcaaacttggcccagagattttatcctctgttcaatccagcattatatccccataagccacccagcccccccctgcagctgtcacaaatcgggtgctttacactgatgcagaagatgagtgagttgcctgctttcttccttattgagttgggggcttacgctgagttgttttatgtgtgtgaattgagtttatctgttggggtgcattacagtttaaagttgtataagaagacaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6

Protein Analysis

313

Amino Acids

34.71

Weight (kDa)

7.6

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64570
fragaria_vesca	FvH4_3g02070
malus_domestica	MD05G1346800.v1.1 MD05G1347100.v1.1 MD05G1347200.v1.1 MD10G1321400.v1.1
prunus_persica	Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1
pyrus_communis	pycom05g31490 pycom10g27210
rosa_chinensis	RchiOBHm_Chr5g0002971 RchiOBHm_Chr5g0003031 RchiOBHm_Chr5g0003091
rosa_laevigata	RLG00000031075
rosa_multiflora	Rmu_sc0000146.1_g000022 Rmu_sc0013603.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072910
rosa_rugosa	Rorug04G0400900
rosa_samantha	Rh5AG024000 Rh5AG025000 Rh5BG026700 Rh5CG026800 Rh5CG027800 Rh5DG025300
rosa_wichuraiana	Rw5G002270 Rw5G002320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	367
AfaI	GTAC	5 cut(s)	53, 108, 186, 204, 664
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	5 cut(s)	89, 481, 509, 659, 736
AjnI	CCWGG	3 cut(s)	119, 399, 459
AleI	CACNNNNGTG	2 cut(s)	174, 278
AluBI	AGCT	4 cut(s)	79, 410, 593, 781
AluI	AGCT	4 cut(s)	79, 410, 593, 781
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	358
AoxI	GGCC	3 cut(s)	43, 382, 711
ApeKI	GCWGC	4 cut(s)	76, 79, 308, 778
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	61, 383, 712
AsuHPI	GGTGA	2 cut(s)	26, 606
AvaII	GGWCC	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	306, 938
Bbv12I	GWGCWC	1 cut(s)	553
BbvCI	CCTCAGC	1 cut(s)	589
BbvI	GCAGC	4 cut(s)	66, 88, 320, 790
BccI	CCATC	4 cut(s)	238, 550, 574, 616
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	3 cut(s)	121, 401, 461
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	2 cut(s)	645, 776
BisI	GCNGC	4 cut(s)	77, 80, 309, 779
BlsI	GCNGC	4 cut(s)	78, 81, 310, 780
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	3 cut(s)	121, 401, 461
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	61, 383, 712
BmiI	GGNNCC	3 cut(s)	369, 586, 606
BmrFI	CCNGG	3 cut(s)	121, 401, 461
BmsI	GCATC	3 cut(s)	153, 289, 798
BpiI	GAAGAC	2 cut(s)	306, 938
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	460, 692
Bse1I	ACTGG	3 cut(s)	46, 192, 645
BseBI	CCWGG	3 cut(s)	121, 401, 461
BseDI	CCNNGG	2 cut(s)	460, 692
BseGI	GGATG	5 cut(s)	10, 284, 409, 445, 585
BseMII	CTCAG	3 cut(s)	152, 603, 855
BseNI	ACTGG	3 cut(s)	46, 192, 645
BseXI	GCAGC	4 cut(s)	66, 88, 320, 790
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	45, 384, 713
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	674
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	3 cut(s)	45, 384, 713
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	2 cut(s)	7, 153
BspANI	GGCC	3 cut(s)	45, 384, 713
BspCNI	CTCAG	3 cut(s)	151, 602, 856
BspLI	GGNNCC	3 cut(s)	369, 586, 606
BspMAI	CTGCAG	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	46, 192, 645
BssECI	CCNNGG	2 cut(s)	460, 692
BssMI	GATC	2 cut(s)	7, 153
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	3 cut(s)	121, 401, 461
Bst4CI	ACNGT	2 cut(s)	563, 914
BstC8I	GCNNGC	2 cut(s)	306, 831
BstDEI	CTNAG	4 cut(s)	138, 416, 589, 864
BstF5I	GGATG	5 cut(s)	10, 284, 409, 445, 585
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	10, 156
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	7, 153
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 308, 710
BstNI	CCWGG	3 cut(s)	121, 401, 461
BstNSI	RCATGY	2 cut(s)	74, 308
BstSCI	CCNGG	3 cut(s)	119, 399, 459
BstSFI	CTRYAG	2 cut(s)	645, 776
BstV1I	GCAGC	4 cut(s)	66, 88, 320, 790
BstV2I	GAAGAC	2 cut(s)	306, 938
BsuRI	GGCC	3 cut(s)	45, 384, 713
BtsCI	GGATG	5 cut(s)	10, 284, 409, 445, 585
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 638, 803
Cac8I	GCNNGC	2 cut(s)	306, 831
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	3 cut(s)	61, 383, 712
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	5 cut(s)	52, 107, 185, 203, 663
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	6 cut(s)	65, 71, 192, 305, 436, 546
CviQI	GTAC	5 cut(s)	52, 107, 185, 203, 663
DdeI	CTNAG	4 cut(s)	138, 416, 589, 864
DpnI	GATC	2 cut(s)	9, 155
DpnII	GATC	2 cut(s)	7, 153
DraI	TTTAAA	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	61
EcoRII	CCWGG	3 cut(s)	119, 399, 459
EcoT14I	CCWWGG	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	6 cut(s)	68, 74, 195, 308, 439, 549
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	6 cut(s)	64, 70, 191, 304, 435, 545
Fnu4HI	GCNGC	4 cut(s)	77, 80, 309, 779
FokI	GGATG	5 cut(s)	17, 271, 416, 452, 592
Fsp4HI	GCNGC	4 cut(s)	77, 80, 309, 779
FspAI	RTGCGCAY	1 cut(s)	303
FspBI	CTAG	1 cut(s)	618
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	4 cut(s)	77, 80, 309, 779
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	45, 384, 713
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	6 cut(s)	68, 74, 195, 308, 439, 549
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HinfI	GANTC	2 cut(s)	24, 466
HphI	GGTGA	2 cut(s)	26, 606
Hpy166II	GTNNAC	2 cut(s)	107, 623
Hpy188I	TCNGA	3 cut(s)	147, 298, 496
Hpy8I	GTNNAC	2 cut(s)	107, 623
Hpy99I	CGWCG	1 cut(s)	474
HpyAV	CCTTC	3 cut(s)	330, 381, 539
HpyCH4III	ACNGT	2 cut(s)	563, 914
HpyCH4V	TGCA	5 cut(s)	76, 308, 778, 811, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 308, 710
HpyF3I	CTNAG	4 cut(s)	138, 416, 589, 864
Hsp92II	CATG	6 cut(s)	68, 74, 195, 308, 439, 549
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	7, 153
LmnI	GCTCC	2 cut(s)	171, 415
Lsp1109I	GCAGC	4 cut(s)	66, 88, 320, 790
LweI	GCATC	3 cut(s)	153, 289, 798
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	636, 783
MalI	GATC	2 cut(s)	9, 155
MboI	GATC	2 cut(s)	7, 153
MboII	GAAGA	4 cut(s)	306, 603, 826, 829
MfeI	CAATTG	2 cut(s)	651, 678
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	3 cut(s)	651, 678, 884
MnlI	CCTC	4 cut(s)	145, 261, 598, 738
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	3 cut(s)	69, 174, 278
MspA1I	CMGCKG	3 cut(s)	79, 593, 781
MspR9I	CCNGG	3 cut(s)	121, 401, 461
MunI	CAATTG	2 cut(s)	651, 678
MvaI	CCWGG	3 cut(s)	121, 401, 461
MwoI	GCNNNNNNNGC	3 cut(s)	172, 308, 710
NdeII	GATC	2 cut(s)	7, 153
NlaIII	CATG	6 cut(s)	68, 74, 195, 308, 439, 549
NlaIV	GGNNCC	3 cut(s)	369, 586, 606
NmuCI	GTSAC	2 cut(s)	636, 783
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	2 cut(s)	74, 308
OliI	CACNNNNGTG	2 cut(s)	174, 278
PaeI	GCATGC	1 cut(s)	308
PciI	ACATGT	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	24, 466
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	78, 81, 310, 780
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	3 cut(s)	119, 399, 459
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	3 cut(s)	119, 399, 459
PspN4I	GGNNCC	3 cut(s)	369, 586, 606
PspPI	GGNCC	3 cut(s)	61, 383, 712
PstI	CTGCAG	1 cut(s)	780
PvuII	CAGCTG	3 cut(s)	79, 593, 781
RsaI	GTAC	5 cut(s)	53, 108, 186, 204, 664
RsaNI	GTAC	5 cut(s)	52, 107, 185, 203, 663
RseI	CAYNNNNRTG	3 cut(s)	69, 174, 278
SaqAI	TTAA	1 cut(s)	917
SatI	GCNGC	4 cut(s)	77, 80, 309, 779
Sau3AI	GATC	2 cut(s)	7, 153
Sau96I	GGNCC	3 cut(s)	61, 383, 712
ScaI	AGTACT	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	121, 401, 461
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	7 cut(s)	81, 144, 253, 412, 595, 619, 783
SfaNI	GCATC	3 cut(s)	153, 289, 798
SfcI	CTRYAG	2 cut(s)	645, 776
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	3 cut(s)	69, 174, 278
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	3 cut(s)	651, 678, 884
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	119, 399, 459
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	2 cut(s)	563, 914
TaqI	TCGA	1 cut(s)	469
TasI	AATT	3 cut(s)	651, 678, 884
TatI	WGTACW	2 cut(s)	106, 184
TfiI	GAWTC	2 cut(s)	24, 466
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TscAI	CASTG	3 cut(s)	34, 645, 810
TseFI	GTSAC	2 cut(s)	636, 783
TseI	GCWGC	4 cut(s)	76, 79, 308, 778
Tsp45I	GTSAC	2 cut(s)	636, 783
TspDTI	ATGAA	2 cut(s)	81, 195
TspRI	CASTG	3 cut(s)	34, 645, 810
VpaK11BI	GGWCC	1 cut(s)	61
XceI	RCATGY	2 cut(s)	74, 308
XspI	CTAG	1 cut(s)	618
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.