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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64570 |
| fragaria_vesca | FvH4_3g02070 |
| malus_domestica | MD05G1346800.v1.1 MD05G1347100.v1.1 MD05G1347200.v1.1 MD10G1321400.v1.1 |
| prunus_persica | Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 |
| pyrus_communis | pycom05g31490 pycom10g27210 |
| rosa_chinensis | RchiOBHm_Chr5g0002971 RchiOBHm_Chr5g0003031 RchiOBHm_Chr5g0003091 |
| rosa_laevigata | RLG00000031075 |
| rosa_multiflora | Rmu_sc0000146.1_g000022 Rmu_sc0013603.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00072910 |
| rosa_rugosa | Rorug04G0400900 |
| rosa_samantha | Rh5AG024000 Rh5AG025000 Rh5BG026700 Rh5CG026800 Rh5CG027800 Rh5DG025300 |
| rosa_wichuraiana | Rw5G002270 Rw5G002320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1960, 3403 |
| AarI | CACCTGC | 2 cut(s) | 2220, 2631 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 818 |
| AatII | GACGTC | 2 cut(s) | 142, 402 |
| Acc16I | TGCGCA | 1 cut(s) | 1234 |
| Acc36I | ACCTGC | 3 cut(s) | 2220, 2631, 3707 |
| AccB1I | GGYRCC | 3 cut(s) | 1298, 1865, 2661 |
| AccBSI | CCGCTC | 1 cut(s) | 3351 |
| AccII | CGCG | 2 cut(s) | 194, 3058 |
| AccIII | TCCGGA | 1 cut(s) | 297 |
| AclI | AACGTT | 1 cut(s) | 1799 |
| AclWI | GGATC | 6 cut(s) | 2001, 2473, 2486, 3260, 3489, 3641 |
| AcoI | YGGCCR | 1 cut(s) | 1975 |
| AcsI | RAATTY | 6 cut(s) | 800, 1874, 1986, 2797, 3416, 3649 |
| AcuI | CTGAAG | 7 cut(s) | 223, 280, 385, 2832, 2899, 3586, 3637 |
| AcyI | GRCGYC | 2 cut(s) | 139, 399 |
| AfaI | GTAC | 9 cut(s) | 558, 728, 1039, 1117, 1135, 1595, 2279, 2617, 3359 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 2029, 2883, 3240, 3360, 3997, 4012 |
| AflIII | ACRYGT | 3 cut(s) | 192, 308, 1001 |
| AjnI | CCWGG | 8 cut(s) | 393, 899, 1050, 1069, 1330, 1390, 3353, 4005 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1786, 1818 |
| AleI | CACNNNNGTG | 2 cut(s) | 1105, 1209 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 279, 311 |
| Alw21I | GWGCWC | 4 cut(s) | 105, 1484, 2528, 3715 |
| Alw26I | GTCTC | 6 cut(s) | 183, 1289, 2264, 2594, 3523, 3905 |
| Alw44I | GTGCAC | 1 cut(s) | 2524 |
| AlwI | GGATC | 6 cut(s) | 2001, 2473, 2486, 3260, 3489, 3641 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2646, 3615 |
| Aor13HI | TCCGGA | 1 cut(s) | 297 |
| AoxI | GGCC | 7 cut(s) | 454, 974, 1313, 1642, 1975, 2251, 3017 |
| ApaI | GGGCCC | 1 cut(s) | 458 |
| ApaLI | GTGCAC | 1 cut(s) | 2524 |
| ApoI | RAATTY | 6 cut(s) | 800, 1874, 1986, 2797, 3416, 3649 |
| AseI | ATTAAT | 1 cut(s) | 2314 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 499, 685 |
| AspLEI | GCGC | 4 cut(s) | 1235, 2035, 2782, 3959 |
| AspS9I | GGNCC | 9 cut(s) | 342, 454, 455, 855, 1314, 1643, 2214, 3696, 3975 |
| AsuC2I | CCSGG | 2 cut(s) | 2024, 2275 |
| AvaII | GGWCC | 5 cut(s) | 342, 855, 2214, 3696, 3975 |
| BaeGI | GKGCMC | 3 cut(s) | 458, 1868, 2528 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1372, 1405 |
| BamHI | GGATCC | 1 cut(s) | 2478 |
| BanI | GGYRCC | 3 cut(s) | 1298, 1865, 2661 |
| BanII | GRGCYC | 2 cut(s) | 105, 458 |
| BauI | CACGAG | 1 cut(s) | 884 |
| BbsI | GAAGAC | 2 cut(s) | 1237, 2794 |
| Bbv12I | GWGCWC | 4 cut(s) | 105, 1484, 2528, 3715 |
| BbvCI | CCTCAGC | 2 cut(s) | 1520, 2962 |
| BceAI | ACGGC | 3 cut(s) | 1419, 1962, 2879 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1830, 1864, 3840, 3874 |
| BciT130I | CCWGG | 8 cut(s) | 395, 901, 1052, 1071, 1332, 1392, 3355, 4007 |
| BciVI | GTATCC | 1 cut(s) | 3806 |
| BclI | TGATCA | 1 cut(s) | 3164 |
| BcnI | CCSGG | 2 cut(s) | 2024, 2275 |
| BcoDI | GTCTC | 6 cut(s) | 183, 1289, 2264, 2594, 3523, 3905 |
| BfmI | CTRYAG | 2 cut(s) | 1576, 2912 |
| BfuAI | ACCTGC | 3 cut(s) | 2220, 2631, 3707 |
| BfuI | GTATCC | 1 cut(s) | 3806 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2144 |
| BglII | AGATCT | 2 cut(s) | 410, 789 |
| BmcAI | AGTACT | 1 cut(s) | 1117 |
| Bme18I | GGWCC | 5 cut(s) | 342, 855, 2214, 3696, 3975 |
| BmgT120I | GGNCC | 9 cut(s) | 342, 454, 455, 855, 1314, 1643, 2214, 3696, 3975 |
| BmrI | ACTGGG | 1 cut(s) | 2477 |
| BmuI | ACTGGG | 1 cut(s) | 2477 |
| BpiI | GAAGAC | 2 cut(s) | 1237, 2794 |
| BpmI | CTGGAG | 3 cut(s) | 1034, 2668, 4043 |
| Bpu10I | CCTNAGC | 3 cut(s) | 467, 1520, 2962 |
| BpuEI | CTTGAG | 4 cut(s) | 317, 1468, 2450, 2680 |
| BpuMI | CCSGG | 2 cut(s) | 2024, 2275 |
| BsaAI | YACGTR | 1 cut(s) | 2619 |
| BsaBI | GATNNNNATC | 4 cut(s) | 52, 352, 3070, 3319 |
| BsaHI | GRCGYC | 2 cut(s) | 139, 399 |
| BsaI | GGTCTC | 1 cut(s) | 2264 |
| BsaJI | CCNNGG | 8 cut(s) | 900, 1069, 1391, 1623, 2022, 2042, 2218, 4005 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2261, 2291 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 2029, 2883, 3240, 3360, 3997, 4012 |
| Bse3DI | GCAATG | 1 cut(s) | 822 |
| Bse8I | GATNNNNATC | 4 cut(s) | 52, 352, 3070, 3319 |
| BseAI | TCCGGA | 1 cut(s) | 297 |
| BseBI | CCWGG | 8 cut(s) | 395, 901, 1052, 1071, 1332, 1392, 3355, 4007 |
| BseDI | CCNNGG | 8 cut(s) | 900, 1069, 1391, 1623, 2022, 2042, 2218, 4005 |
| BseJI | GATNNNNATC | 4 cut(s) | 52, 352, 3070, 3319 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 2029, 2883, 3240, 3360, 3997, 4012 |
| BseMI | GCAATG | 1 cut(s) | 822 |
| BseRI | GAGGAG | 7 cut(s) | 27, 48, 663, 2323, 2842, 3615, 3849 |
| BseSI | GKGCMC | 3 cut(s) | 458, 1868, 2528 |
| BsgI | GTGCAG | 3 cut(s) | 1026, 2227, 3115 |
| Bsh1236I | CGCG | 2 cut(s) | 194, 3058 |
| BshFI | GGCC | 7 cut(s) | 456, 976, 1315, 1644, 1977, 2253, 3019 |
| BshNI | GGYRCC | 3 cut(s) | 1298, 1865, 2661 |
| BsiHKAI | GWGCWC | 4 cut(s) | 105, 1484, 2528, 3715 |
| BsiSI | CCGG | 4 cut(s) | 81, 298, 2024, 2274 |
| BslFI | GGGAC | 6 cut(s) | 355, 814, 1605, 1960, 1980, 2200 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 2029, 2883, 3240, 3360, 3997, 4012 |
| BsmAI | GTCTC | 6 cut(s) | 183, 1289, 2264, 2594, 3523, 3905 |
| BsmBI | CGTCTC | 1 cut(s) | 183 |
| BsmFI | GGGAC | 6 cut(s) | 355, 814, 1605, 1960, 1980, 2200 |
| BsmI | GAATGC | 1 cut(s) | 2681 |
| BsnI | GGCC | 7 cut(s) | 456, 976, 1315, 1644, 1977, 2253, 3019 |
| Bso31I | GGTCTC | 1 cut(s) | 2264 |
| Bsp120I | GGGCCC | 1 cut(s) | 454 |
| Bsp1286I | GDGCHC | 6 cut(s) | 105, 458, 1484, 1868, 2528, 3715 |
| Bsp13I | TCCGGA | 1 cut(s) | 297 |
| Bsp19I | CCATGG | 1 cut(s) | 2218 |
| BspANI | GGCC | 7 cut(s) | 456, 976, 1315, 1644, 1977, 2253, 3019 |
| BspEI | TCCGGA | 1 cut(s) | 297 |
| BspFNI | CGCG | 2 cut(s) | 194, 3058 |
| BspHI | TCATGA | 1 cut(s) | 2246 |
| BspMAI | CTGCAG | 1 cut(s) | 2916 |
| BspMI | ACCTGC | 3 cut(s) | 2220, 2631, 3707 |
| BspPI | GGATC | 6 cut(s) | 2001, 2473, 2486, 3260, 3489, 3641 |
| BspQI | GCTCTTC | 2 cut(s) | 676, 2108 |
| BspT107I | GGYRCC | 3 cut(s) | 1298, 1865, 2661 |
| BspTNI | GGTCTC | 1 cut(s) | 2264 |
| BsrBI | CCGCTC | 1 cut(s) | 3351 |
| BsrDI | GCAATG | 1 cut(s) | 822 |
| BssECI | CCNNGG | 8 cut(s) | 900, 1069, 1391, 1623, 2022, 2042, 2218, 4005 |
| BssNI | GRCGYC | 2 cut(s) | 139, 399 |
| BssSI | CACGAG | 1 cut(s) | 884 |
| BssT1I | CCWWGG | 3 cut(s) | 1623, 2042, 2218 |
| Bst2BI | CACGAG | 1 cut(s) | 884 |
| Bst2UI | CCWGG | 8 cut(s) | 395, 901, 1052, 1071, 1332, 1392, 3355, 4007 |
| Bst4CI | ACNGT | 7 cut(s) | 731, 1494, 2172, 2307, 2940, 3113, 4049 |
| Bst6I | CTCTTC | 6 cut(s) | 13, 547, 676, 1918, 2108, 3541 |
| BstACI | GRCGYC | 2 cut(s) | 139, 399 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2433, 2861 |
| BstBAI | YACGTR | 1 cut(s) | 2619 |
| BstC8I | GCNNGC | 3 cut(s) | 196, 458, 1237 |
| BstDSI | CCRYGG | 1 cut(s) | 2218 |
| BstEII | GGTNACC | 1 cut(s) | 3510 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3238 |
| BstFNI | CGCG | 2 cut(s) | 194, 3058 |
| BstHHI | GCGC | 4 cut(s) | 1235, 2035, 2782, 3959 |
| BstMAI | GTCTC | 6 cut(s) | 183, 1289, 2264, 2594, 3523, 3905 |
| BstNI | CCWGG | 8 cut(s) | 395, 901, 1052, 1071, 1332, 1392, 3355, 4007 |
| BstNSI | RCATGY | 5 cut(s) | 312, 1005, 1239, 3124, 3643 |
| BstPI | GGTNACC | 1 cut(s) | 3510 |
| BstSFI | CTRYAG | 2 cut(s) | 1576, 2912 |
| BstSLI | GKGCMC | 3 cut(s) | 458, 1868, 2528 |
| BstUI | CGCG | 2 cut(s) | 194, 3058 |
| BstV2I | GAAGAC | 2 cut(s) | 1237, 2794 |
| BstX2I | RGATCY | 5 cut(s) | 410, 789, 2006, 2478, 3265 |
| BstYI | RGATCY | 5 cut(s) | 410, 789, 2006, 2478, 3265 |
| BsuI | GTATCC | 1 cut(s) | 3806 |
| BsuRI | GGCC | 7 cut(s) | 456, 976, 1315, 1644, 1977, 2253, 3019 |
| BtgI | CCRYGG | 1 cut(s) | 2218 |
| BtsI | GCAGTG | 4 cut(s) | 571, 958, 2034, 4070 |
| BveI | ACCTGC | 3 cut(s) | 2220, 2631, 3707 |
| Cac8I | GCNNGC | 3 cut(s) | 196, 458, 1237 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2646, 3615 |
| CciI | TCATGA | 1 cut(s) | 2246 |
| CfoI | GCGC | 4 cut(s) | 1235, 2035, 2782, 3959 |
| Cfr13I | GGNCC | 9 cut(s) | 342, 454, 455, 855, 1314, 1643, 2214, 3696, 3975 |
| CseI | GACGC | 4 cut(s) | 200, 816, 1231, 3095 |
| Csp6I | GTAC | 9 cut(s) | 557, 727, 1038, 1116, 1134, 1594, 2278, 2616, 3358 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1333, 1368 |
| CviQI | GTAC | 9 cut(s) | 557, 727, 1038, 1116, 1134, 1594, 2278, 2616, 3358 |
| DraI | TTTAAA | 2 cut(s) | 2107, 2606 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 818 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 818 |
| EaeI | YGGCCR | 1 cut(s) | 1975 |
| Eam1104I | CTCTTC | 6 cut(s) | 13, 547, 676, 1918, 2108, 3541 |
| EarI | CTCTTC | 6 cut(s) | 13, 547, 676, 1918, 2108, 3541 |
| EciI | GGCGGA | 2 cut(s) | 160, 854 |
| Ecl136II | GAGCTC | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 3 cut(s) | 1623, 2042, 2218 |
| Eco147I | AGGCCT | 1 cut(s) | 2253 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 458 |
| Eco31I | GGTCTC | 1 cut(s) | 2264 |
| Eco32I | GATATC | 1 cut(s) | 1930 |
| Eco47I | GGWCC | 5 cut(s) | 342, 855, 2214, 3696, 3975 |
| Eco53kI | GAGCTC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 7 cut(s) | 223, 280, 385, 2832, 2899, 3586, 3637 |
| Eco91I | GGTNACC | 1 cut(s) | 3510 |
| EcoICRI | GAGCTC | 1 cut(s) | 103 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3238 |
| EcoO109I | RGGNCCY | 3 cut(s) | 342, 3696, 3975 |
| EcoO65I | GGTNACC | 1 cut(s) | 3510 |
| EcoRII | CCWGG | 8 cut(s) | 393, 899, 1050, 1069, 1330, 1390, 3353, 4005 |
| EcoRV | GATATC | 1 cut(s) | 1930 |
| EcoT14I | CCWWGG | 3 cut(s) | 1623, 2042, 2218 |
| EcoT22I | ATGCAT | 2 cut(s) | 2429, 2857 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 458 |
| ErhI | CCWWGG | 3 cut(s) | 1623, 2042, 2218 |
| Esp3I | CGTCTC | 1 cut(s) | 183 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 673, 705 |
| FaqI | GGGAC | 6 cut(s) | 355, 814, 1605, 1960, 1980, 2200 |
| FauI | CCCGC | 2 cut(s) | 465, 1706 |
| FauNDI | CATATG | 1 cut(s) | 2404 |
| FbaI | TGATCA | 1 cut(s) | 3164 |
| FriOI | GRGCYC | 2 cut(s) | 105, 458 |
| FspAI | RTGCGCAY | 1 cut(s) | 1234 |
| FspI | TGCGCA | 1 cut(s) | 1234 |
| GlaI | GCGC | 4 cut(s) | 1234, 2034, 2781, 3958 |
| GsuI | CTGGAG | 3 cut(s) | 1034, 2668, 4043 |
| HaeIII | GGCC | 7 cut(s) | 456, 976, 1315, 1644, 1977, 2253, 3019 |
| HapII | CCGG | 4 cut(s) | 81, 298, 2024, 2274 |
| HgaI | GACGC | 4 cut(s) | 200, 816, 1231, 3095 |
| HhaI | GCGC | 4 cut(s) | 1235, 2035, 2782, 3959 |
| Hin1I | GRCGYC | 2 cut(s) | 139, 399 |
| Hin6I | GCGC | 4 cut(s) | 1233, 2033, 2780, 3957 |
| HinP1I | GCGC | 4 cut(s) | 1233, 2033, 2780, 3957 |
| HincII | GTYRAC | 3 cut(s) | 161, 610, 1554 |
| HindII | GTYRAC | 3 cut(s) | 161, 610, 1554 |
| HindIII | AAGCTT | 1 cut(s) | 1954 |
| HpaII | CCGG | 4 cut(s) | 81, 298, 2024, 2274 |
| Hpy166II | GTNNAC | 9 cut(s) | 161, 403, 444, 610, 1038, 1554, 2526, 3645, 3950 |
| Hpy8I | GTNNAC | 9 cut(s) | 161, 403, 444, 610, 1038, 1554, 2526, 3645, 3950 |
| Hpy99I | CGWCG | 2 cut(s) | 144, 1405 |
| HpyCH4III | ACNGT | 7 cut(s) | 731, 1494, 2172, 2307, 2940, 3113, 4049 |
| HpyCH4IV | ACGT | 6 cut(s) | 139, 399, 1799, 2242, 2618, 2888 |
| HpySE526I | ACGT | 6 cut(s) | 139, 399, 1799, 2242, 2618, 2888 |
| Hsp92I | GRCGYC | 2 cut(s) | 139, 399 |
| HspAI | GCGC | 4 cut(s) | 1233, 2033, 2780, 3957 |
| Kpn2I | TCCGGA | 1 cut(s) | 297 |
| Ksp22I | TGATCA | 1 cut(s) | 3164 |
| LguI | GCTCTTC | 2 cut(s) | 676, 2108 |
| LmnI | GCTCC | 8 cut(s) | 69, 108, 741, 1102, 1346, 2336, 3243, 3356 |
| MaeII | ACGT | 6 cut(s) | 139, 399, 1799, 2242, 2618, 2888 |
| MaeIII | GTNAC | 8 cut(s) | 1567, 1706, 2768, 3107, 3113, 3510, 3877, 4065 |
| MbiI | CCGCTC | 1 cut(s) | 3351 |
| MfeI | CAATTG | 1 cut(s) | 1582 |
| MflI | RGATCY | 5 cut(s) | 410, 789, 2006, 2478, 3265 |
| MhlI | GDGCHC | 6 cut(s) | 105, 458, 1484, 1868, 2528, 3715 |
| MluI | ACGCGT | 1 cut(s) | 192 |
| MlyI | GAGTC | 6 cut(s) | 156, 755, 1942, 2456, 2784, 3552 |
| MmeI | TCCRAC | 6 cut(s) | 250, 1817, 2396, 2520, 2681, 3197 |
| Mph1103I | ATGCAT | 2 cut(s) | 2429, 2857 |
| MroI | TCCGGA | 1 cut(s) | 297 |
| MroXI | GAANNNNTTC | 2 cut(s) | 499, 685 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1105, 1209 |
| MspA1I | CMGCKG | 3 cut(s) | 1010, 1524, 1704 |
| MspI | CCGG | 4 cut(s) | 81, 298, 2024, 2274 |
| MunI | CAATTG | 1 cut(s) | 1582 |
| Mva1269I | GAATGC | 1 cut(s) | 2681 |
| MvaI | CCWGG | 8 cut(s) | 395, 901, 1052, 1071, 1332, 1392, 3355, 4007 |
| MvnI | CGCG | 2 cut(s) | 194, 3058 |
| NciI | CCSGG | 2 cut(s) | 2024, 2275 |
| NcoI | CCATGG | 1 cut(s) | 2218 |
| NdeI | CATATG | 1 cut(s) | 2404 |
| NmuCI | GTSAC | 6 cut(s) | 1567, 1706, 3107, 3510, 3877, 4065 |
| NsbI | TGCGCA | 1 cut(s) | 1234 |
| NsiI | ATGCAT | 2 cut(s) | 2429, 2857 |
| NspI | RCATGY | 5 cut(s) | 312, 1005, 1239, 3124, 3643 |
| OliI | CACNNNNGTG | 2 cut(s) | 1105, 1209 |
| PaeI | GCATGC | 1 cut(s) | 1239 |
| PagI | TCATGA | 1 cut(s) | 2246 |
| PaqCI | CACCTGC | 2 cut(s) | 2220, 2631 |
| PceI | AGGCCT | 1 cut(s) | 2253 |
| PciI | ACATGT | 2 cut(s) | 308, 1001 |
| PciSI | GCTCTTC | 2 cut(s) | 676, 2108 |
| PctI | GAATGC | 1 cut(s) | 2681 |
| PdmI | GAANNNNTTC | 2 cut(s) | 499, 685 |
| PfoI | TCCNGGA | 1 cut(s) | 1330 |
| PleI | GAGTC | 6 cut(s) | 156, 755, 1942, 2455, 2784, 3552 |
| PpsI | GAGTC | 6 cut(s) | 156, 755, 1942, 2455, 2784, 3552 |
| Ppu21I | YACGTR | 1 cut(s) | 2619 |
| PpuMI | RGGWCCY | 3 cut(s) | 342, 3696, 3975 |
| PscI | ACATGT | 2 cut(s) | 308, 1001 |
| PshBI | ATTAAT | 1 cut(s) | 2314 |
| PsiI | TTATAA | 2 cut(s) | 1960, 3403 |
| Psp124BI | GAGCTC | 1 cut(s) | 105 |
| Psp1406I | AACGTT | 1 cut(s) | 1799 |
| Psp5II | RGGWCCY | 3 cut(s) | 342, 3696, 3975 |
| Psp6I | CCWGG | 8 cut(s) | 393, 899, 1050, 1069, 1330, 1390, 3353, 4005 |
| PspEI | GGTNACC | 1 cut(s) | 3510 |
| PspGI | CCWGG | 8 cut(s) | 393, 899, 1050, 1069, 1330, 1390, 3353, 4005 |
| PspOMI | GGGCCC | 1 cut(s) | 454 |
| PspPI | GGNCC | 9 cut(s) | 342, 454, 455, 855, 1314, 1643, 2214, 3696, 3975 |
| PspPPI | RGGWCCY | 3 cut(s) | 342, 3696, 3975 |
| PstI | CTGCAG | 1 cut(s) | 2916 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2646, 3615 |
| PsuI | RGATCY | 5 cut(s) | 410, 789, 2006, 2478, 3265 |
| PvuII | CAGCTG | 3 cut(s) | 1010, 1524, 1704 |
| RsaI | GTAC | 9 cut(s) | 558, 728, 1039, 1117, 1135, 1595, 2279, 2617, 3359 |
| RsaNI | GTAC | 9 cut(s) | 557, 727, 1038, 1116, 1134, 1594, 2278, 2616, 3358 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1105, 1209 |
| SacI | GAGCTC | 1 cut(s) | 105 |
| SapI | GCTCTTC | 2 cut(s) | 676, 2108 |
| Sau96I | GGNCC | 9 cut(s) | 342, 454, 455, 855, 1314, 1643, 2214, 3696, 3975 |
| ScaI | AGTACT | 1 cut(s) | 1117 |
| SchI | GAGTC | 6 cut(s) | 156, 755, 1942, 2456, 2784, 3552 |
| SduI | GDGCHC | 6 cut(s) | 105, 458, 1484, 1868, 2528, 3715 |
| SfcI | CTRYAG | 2 cut(s) | 1576, 2912 |
| SinI | GGWCC | 5 cut(s) | 342, 855, 2214, 3696, 3975 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1105, 1209 |
| SmlI | CTYRAG | 4 cut(s) | 332, 1483, 2465, 2695 |
| SmoI | CTYRAG | 4 cut(s) | 332, 1483, 2465, 2695 |
| SphI | GCATGC | 1 cut(s) | 1239 |
| SseBI | AGGCCT | 1 cut(s) | 2253 |
| SspI | AATATT | 2 cut(s) | 539, 1148 |
| SstI | GAGCTC | 1 cut(s) | 105 |
| StuI | AGGCCT | 1 cut(s) | 2253 |
| StyI | CCWWGG | 3 cut(s) | 1623, 2042, 2218 |
| TaaI | ACNGT | 7 cut(s) | 731, 1494, 2172, 2307, 2940, 3113, 4049 |
| TaiI | ACGT | 6 cut(s) | 142, 402, 1802, 2245, 2621, 2891 |
| TaqI | TCGA | 7 cut(s) | 493, 764, 1400, 2376, 2445, 2460, 3586 |
| TatI | WGTACW | 4 cut(s) | 556, 726, 1037, 1115 |
| TauI | GCSGC | 2 cut(s) | 2093, 3061 |
| TseFI | GTSAC | 6 cut(s) | 1567, 1706, 3107, 3510, 3877, 4065 |
| Tsp45I | GTSAC | 6 cut(s) | 1567, 1706, 3107, 3510, 3877, 4065 |
| VneI | GTGCAC | 1 cut(s) | 2524 |
| VpaK11BI | GGWCC | 5 cut(s) | 342, 855, 2214, 3696, 3975 |
| VspI | ATTAAT | 1 cut(s) | 2314 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3238 |
| XapI | RAATTY | 6 cut(s) | 800, 1874, 1986, 2797, 3416, 3649 |
| XbaI | TCTAGA | 1 cut(s) | 413 |
| XceI | RCATGY | 5 cut(s) | 312, 1005, 1239, 3124, 3643 |
| XmnI | GAANNNNTTC | 2 cut(s) | 499, 685 |
| ZraI | GACGTC | 2 cut(s) | 140, 400 |
| ZrmI | AGTACT | 1 cut(s) | 1117 |
| Zsp2I | ATGCAT | 2 cut(s) | 2429, 2857 |