Rw5G002320
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006162
Physical Location & Seq
Reverse (-)
1988412 .. 1989148
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002320.1

Sequence Viewer

Length: 636 bp
ATGTCTTCTACAATGGATGATCGTTCTAAAAATGGATTCACTGCTCACCAGATAGGCCAGTTGTACCATTTGGTCCATGAACATGTGCAGCTGCTTATTCAAGTATTTTCTCTGTGTGTACTTGATAACTCCAGGCAACATTTTGCCTCTCAGGTTCAGAGATTGATCTGTGAGATGCTCCACAAGCGTGATGAAGTACTGGCATGGAAAAATGTACCATATCCAAACATTTGCTTTTGCCCATCAATGCCAACTGAAACACCTCAATCCTACCCGATACAAAGCACTTTAGTGTCATCCCACACATCTGATGCGCATGCAGCGTCTTCTCCTTCCAATAAGCAGACGTTAGTTTCCCCAAATGTCTCTCCTTTCTGGGTCCCTTCTGTAAATGGCCCTGTGCTATCTGTCCTGGATGTAGCTCCACTTAGTTTGATTGGGAGATACATGGATGATATTGATACTGCTGTCCAGGGGAATCGACGGCGTTTCAAGGAAACTATTTCTGATATTTGCCTTGAAAAAGAGCCTTTGCTTCCCCTTCCTAACTTCCCATCATGTGCTCAAGCCAACTGTGAAGTTGTAAGTGGGATGGGTTCCTCAGCTGTCAATGTGGTTCCATATTCACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

211

Amino Acids

23.28

Weight (kDa)

6.03

Isoelectric Point (pI)

61.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 315
AfaI GTAC 4 cut(s) 65, 120, 198, 216
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 101, 493, 521
AjnI CCWGG 3 cut(s) 131, 411, 471
AleI CACNNNNGTG 2 cut(s) 186, 290
AluBI AGCT 3 cut(s) 91, 422, 605
AluI AGCT 3 cut(s) 91, 422, 605
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 2 cut(s) 55, 394
ApeKI GCWGC 3 cut(s) 88, 91, 320
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 3 cut(s) 73, 379, 395
AsuHPI GGTGA 2 cut(s) 38, 618
AvaII GGWCC 2 cut(s) 73, 379
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 565
BbvCI CCTCAGC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 78, 100, 332
BccI CCATC 3 cut(s) 250, 562, 586
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 3 cut(s) 133, 413, 473
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 1 cut(s) 630
BisI GCNGC 3 cut(s) 89, 92, 321
BlsI GCNGC 3 cut(s) 90, 93, 322
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 133, 413, 473
Bme18I GGWCC 2 cut(s) 73, 379
BmgT120I GGNCC 3 cut(s) 73, 379, 395
BmiI GGNNCC 4 cut(s) 380, 381, 598, 618
BmrFI CCNGG 3 cut(s) 133, 413, 473
BmsI GCATC 2 cut(s) 165, 301
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 58, 204
BseBI CCWGG 3 cut(s) 133, 413, 473
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 5 cut(s) 22, 296, 421, 457, 597
BseMII CTCAG 2 cut(s) 164, 615
BseNI ACTGG 2 cut(s) 58, 204
BseXI GCAGC 3 cut(s) 78, 100, 332
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 2 cut(s) 57, 396
BsiHKAI GWGCWC 1 cut(s) 565
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 57, 396
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 2 cut(s) 19, 165
BspANI GGCC 2 cut(s) 57, 396
BspCNI CTCAG 2 cut(s) 163, 614
BspLI GGNNCC 4 cut(s) 380, 381, 598, 618
BsrI ACTGG 2 cut(s) 58, 204
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 2 cut(s) 19, 165
Bst2UI CCWGG 3 cut(s) 133, 413, 473
Bst4CI ACNGT 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 150, 428, 601
BstF5I GGATG 5 cut(s) 22, 296, 421, 457, 597
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 22, 168
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 2 cut(s) 19, 165
BstMWI GCNNNNNNNGC 2 cut(s) 184, 320
BstNI CCWGG 3 cut(s) 133, 413, 473
BstNSI RCATGY 2 cut(s) 86, 320
BstSCI CCNGG 3 cut(s) 131, 411, 471
BstV1I GCAGC 3 cut(s) 78, 100, 332
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 57, 396
BtsCI GGATG 5 cut(s) 22, 296, 421, 457, 597
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 73, 379, 395
CseI GACGC 1 cut(s) 312
Csp6I GTAC 4 cut(s) 64, 119, 197, 215
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 6 cut(s) 77, 83, 204, 317, 448, 558
CviJI RGCY 7 cut(s) 57, 91, 396, 422, 529, 569, 605
CviKI_1 RGCY 7 cut(s) 57, 91, 396, 422, 529, 569, 605
CviQI GTAC 4 cut(s) 64, 119, 197, 215
DdeI CTNAG 3 cut(s) 150, 428, 601
DpnI GATC 2 cut(s) 21, 167
DpnII GATC 2 cut(s) 19, 165
Eco47I GGWCC 2 cut(s) 73, 379
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 3 cut(s) 131, 411, 471
FaeI CATG 6 cut(s) 80, 86, 207, 320, 451, 561
FaiI YATR 8 cut(s) 78, 84, 205, 220, 318, 449, 559, 622
FaqI GGGAC 1 cut(s) 365
FatI CATG 6 cut(s) 76, 82, 203, 316, 447, 557
Fnu4HI GCNGC 3 cut(s) 89, 92, 321
FokI GGATG 5 cut(s) 29, 283, 428, 464, 604
Fsp4HI GCNGC 3 cut(s) 89, 92, 321
FspAI RTGCGCAY 1 cut(s) 315
FspBI CTAG 1 cut(s) 630
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 1 cut(s) 315
GluI GCNGC 3 cut(s) 89, 92, 321
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 2 cut(s) 57, 396
HgaI GACGC 1 cut(s) 312
HhaI GCGC 1 cut(s) 316
Hin1II CATG 6 cut(s) 80, 86, 207, 320, 451, 561
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 2 cut(s) 36, 478
HphI GGTGA 2 cut(s) 38, 618
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 159, 310, 508
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 3 cut(s) 342, 393, 551
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 2 cut(s) 88, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 320
HpyF3I CTNAG 3 cut(s) 150, 428, 601
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 6 cut(s) 80, 86, 207, 320, 451, 561
HspAI GCGC 1 cut(s) 314
KflI GGGWCCC 1 cut(s) 379
Kzo9I GATC 2 cut(s) 19, 165
LmnI GCTCC 2 cut(s) 183, 427
Lsp1109I GCAGC 3 cut(s) 78, 100, 332
LweI GCATC 2 cut(s) 165, 301
MaeI CTAG 1 cut(s) 630
MaeII ACGT 1 cut(s) 347
MalI GATC 2 cut(s) 21, 167
MboI GATC 2 cut(s) 19, 165
MboII GAAGA 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 565
MnlI CCTC 3 cut(s) 157, 273, 610
MseI TTAA 1 cut(s) 634
MslI CAYNNNNRTG 3 cut(s) 81, 186, 290
MspA1I CMGCKG 2 cut(s) 91, 605
MspR9I CCNGG 3 cut(s) 133, 413, 473
MvaI CCWGG 3 cut(s) 133, 413, 473
MwoI GCNNNNNNNGC 2 cut(s) 184, 320
NdeII GATC 2 cut(s) 19, 165
NlaIII CATG 6 cut(s) 80, 86, 207, 320, 451, 561
NlaIV GGNNCC 4 cut(s) 380, 381, 598, 618
NsbI TGCGCA 1 cut(s) 315
NspI RCATGY 2 cut(s) 86, 320
OliI CACNNNNGTG 2 cut(s) 186, 290
PaeI GCATGC 1 cut(s) 320
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 2 cut(s) 36, 478
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 3 cut(s) 90, 93, 322
PpuMI RGGWCCY 1 cut(s) 379
PscI ACATGT 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 131, 411, 471
PspGI CCWGG 3 cut(s) 131, 411, 471
PspN4I GGNNCC 4 cut(s) 380, 381, 598, 618
PspPI GGNCC 3 cut(s) 73, 379, 395
PspPPI RGGWCCY 1 cut(s) 379
PvuII CAGCTG 2 cut(s) 91, 605
RsaI GTAC 4 cut(s) 65, 120, 198, 216
RsaNI GTAC 4 cut(s) 64, 119, 197, 215
RseI CAYNNNNRTG 3 cut(s) 81, 186, 290
SaqAI TTAA 1 cut(s) 634
SatI GCNGC 3 cut(s) 89, 92, 321
Sau3AI GATC 2 cut(s) 19, 165
Sau96I GGNCC 3 cut(s) 73, 379, 395
ScaI AGTACT 1 cut(s) 198
ScrFI CCNGG 3 cut(s) 133, 413, 473
SduI GDGCHC 1 cut(s) 565
SetI ASST 7 cut(s) 93, 156, 265, 350, 424, 607, 631
SfaNI GCATC 2 cut(s) 165, 301
SinI GGWCC 2 cut(s) 73, 379
SmiMI CAYNNNNRTG 3 cut(s) 81, 186, 290
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
SphI GCATGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 630
StyD4I CCNGG 3 cut(s) 131, 411, 471
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 1 cut(s) 350
TaqI TCGA 1 cut(s) 481
TatI WGTACW 2 cut(s) 118, 196
TfiI GAWTC 2 cut(s) 36, 478
Tru1I TTAA 1 cut(s) 634
Tru9I TTAA 1 cut(s) 634
TscAI CASTG 1 cut(s) 46
TseI GCWGC 3 cut(s) 88, 91, 320
TspDTI ATGAA 2 cut(s) 93, 207
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 73, 379
XceI RCATGY 2 cut(s) 86, 320
XspI CTAG 1 cut(s) 630
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.