Rh5AG025000
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006162
Physical Location & Seq
Reverse (-)
1734075 .. 1734799
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG025000.1

Sequence Viewer

Length: 624 bp
ATGGATGATCGTTCTAAAAATGGATTCACTGCTCACCAGATAGGCCAGTTGTACCATTTGGTCCATGAACATGTGCAGCTGCTTATTCAAGTATTTTCTCTGTGTGTACTTGATAACTCCAGGCAACATTTTGCCTCTCAGGTTCAGAGATTGATCTGTGAGATGCTCCACAAGCATGATGAAGTACTGGCATGGAAAAATGTACCATATCCAAACATTTGCTTTTGCCCATCAATGCCAACTGAAACACCTCAATCCTACCCGATACAAAGCACTTTAGTGTCATCCCACACATCTGATGCGCATGCAGCGTCTTCTCCTTCCAATAAGCAGATGTTAGTTTCCCCAAATGTCTCTCCTTTCTGGGTCCCTTCTGTAAATGGCCCTGTGCTATCTGTCCTGGATGTAGCTCCACTTAGTTTGATTGGGAGATACATGGATGATATTGATACTGCTGTCCAGGGGAATCGACGGCGTTTCAAGGAAACTATTTCTGATATTTGCCTTGAAAAAGAGCCTTTGCTTCCCCTTCCTAACTTCCCATCATGTGCTCAAGCCAACTGTGAAGTTGTAAGTGGGATGGGTTCCTCAGCTGTCAATGTGGTTCCATCTTCACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

207

Amino Acids

22.81

Weight (kDa)

5.94

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
AfaI GTAC 4 cut(s) 53, 108, 186, 204
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 89, 481, 509
AjnI CCWGG 3 cut(s) 119, 399, 459
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 3 cut(s) 79, 410, 593
AluI AGCT 3 cut(s) 79, 410, 593
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 358
AoxI GGCC 2 cut(s) 43, 382
ApeKI GCWGC 3 cut(s) 76, 79, 308
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 61, 367, 383
AsuHPI GGTGA 2 cut(s) 26, 606
AvaII GGWCC 2 cut(s) 61, 367
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 553
BbvCI CCTCAGC 1 cut(s) 589
BbvI GCAGC 3 cut(s) 66, 88, 320
BccI CCATC 4 cut(s) 238, 550, 574, 616
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 3 cut(s) 121, 401, 461
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 618
BisI GCNGC 3 cut(s) 77, 80, 309
BlsI GCNGC 3 cut(s) 78, 81, 310
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 3 cut(s) 121, 401, 461
Bme18I GGWCC 2 cut(s) 61, 367
BmgT120I GGNCC 3 cut(s) 61, 367, 383
BmiI GGNNCC 4 cut(s) 368, 369, 586, 606
BmrFI CCNGG 3 cut(s) 121, 401, 461
BmsI GCATC 2 cut(s) 153, 289
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 46, 192
BseBI CCWGG 3 cut(s) 121, 401, 461
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 5 cut(s) 10, 284, 409, 445, 585
BseMII CTCAG 2 cut(s) 152, 603
BseNI ACTGG 2 cut(s) 46, 192
BseXI GCAGC 3 cut(s) 66, 88, 320
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 2 cut(s) 45, 384
BsiHKAI GWGCWC 1 cut(s) 553
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 2 cut(s) 45, 384
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 7, 153
BspANI GGCC 2 cut(s) 45, 384
BspCNI CTCAG 2 cut(s) 151, 602
BspLI GGNNCC 4 cut(s) 368, 369, 586, 606
BsrI ACTGG 2 cut(s) 46, 192
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 2 cut(s) 7, 153
Bst2UI CCWGG 3 cut(s) 121, 401, 461
Bst4CI ACNGT 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 138, 416, 589
BstF5I GGATG 5 cut(s) 10, 284, 409, 445, 585
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 10, 156
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 2 cut(s) 7, 153
BstMWI GCNNNNNNNGC 2 cut(s) 172, 308
BstNI CCWGG 3 cut(s) 121, 401, 461
BstNSI RCATGY 2 cut(s) 74, 308
BstSCI CCNGG 3 cut(s) 119, 399, 459
BstV1I GCAGC 3 cut(s) 66, 88, 320
BstV2I GAAGAC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 45, 384
BtsCI GGATG 5 cut(s) 10, 284, 409, 445, 585
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 61, 367, 383
CseI GACGC 1 cut(s) 300
Csp6I GTAC 4 cut(s) 52, 107, 185, 203
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 7 cut(s) 65, 71, 176, 192, 305, 436, 546
CviJI RGCY 7 cut(s) 45, 79, 384, 410, 517, 557, 593
CviKI_1 RGCY 7 cut(s) 45, 79, 384, 410, 517, 557, 593
CviQI GTAC 4 cut(s) 52, 107, 185, 203
DdeI CTNAG 3 cut(s) 138, 416, 589
DpnI GATC 2 cut(s) 9, 155
DpnII GATC 2 cut(s) 7, 153
Eco47I GGWCC 2 cut(s) 61, 367
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 119, 399, 459
FaeI CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
FaiI YATR 8 cut(s) 66, 72, 177, 193, 208, 306, 437, 547
FaqI GGGAC 1 cut(s) 353
FatI CATG 7 cut(s) 64, 70, 175, 191, 304, 435, 545
Fnu4HI GCNGC 3 cut(s) 77, 80, 309
FokI GGATG 5 cut(s) 17, 271, 416, 452, 592
Fsp4HI GCNGC 3 cut(s) 77, 80, 309
FspAI RTGCGCAY 1 cut(s) 303
FspBI CTAG 1 cut(s) 618
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
GluI GCNGC 3 cut(s) 77, 80, 309
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 2 cut(s) 45, 384
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 304
Hin1II CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 2 cut(s) 24, 466
HphI GGTGA 2 cut(s) 26, 606
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 3 cut(s) 147, 298, 496
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 3 cut(s) 330, 381, 539
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4V TGCA 2 cut(s) 76, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 308
HpyF3I CTNAG 3 cut(s) 138, 416, 589
Hsp92II CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
HspAI GCGC 1 cut(s) 302
KflI GGGWCCC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 7, 153
LmnI GCTCC 2 cut(s) 171, 415
Lsp1109I GCAGC 3 cut(s) 66, 88, 320
LweI GCATC 2 cut(s) 153, 289
MaeI CTAG 1 cut(s) 618
MalI GATC 2 cut(s) 9, 155
MboI GATC 2 cut(s) 7, 153
MboII GAAGA 2 cut(s) 306, 603
MhlI GDGCHC 1 cut(s) 553
MnlI CCTC 3 cut(s) 145, 261, 598
MseI TTAA 1 cut(s) 622
MslI CAYNNNNRTG 3 cut(s) 69, 174, 278
MspA1I CMGCKG 2 cut(s) 79, 593
MspR9I CCNGG 3 cut(s) 121, 401, 461
MvaI CCWGG 3 cut(s) 121, 401, 461
MwoI GCNNNNNNNGC 2 cut(s) 172, 308
NdeII GATC 2 cut(s) 7, 153
NlaIII CATG 7 cut(s) 68, 74, 179, 195, 308, 439, 549
NlaIV GGNNCC 4 cut(s) 368, 369, 586, 606
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 2 cut(s) 74, 308
OliI CACNNNNGTG 1 cut(s) 278
PaeI GCATGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 2 cut(s) 24, 466
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 3 cut(s) 78, 81, 310
PpuMI RGGWCCY 1 cut(s) 367
PscI ACATGT 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 3 cut(s) 119, 399, 459
PspGI CCWGG 3 cut(s) 119, 399, 459
PspN4I GGNNCC 4 cut(s) 368, 369, 586, 606
PspPI GGNCC 3 cut(s) 61, 367, 383
PspPPI RGGWCCY 1 cut(s) 367
PvuII CAGCTG 2 cut(s) 79, 593
RsaI GTAC 4 cut(s) 53, 108, 186, 204
RsaNI GTAC 4 cut(s) 52, 107, 185, 203
RseI CAYNNNNRTG 3 cut(s) 69, 174, 278
SaqAI TTAA 1 cut(s) 622
SatI GCNGC 3 cut(s) 77, 80, 309
Sau3AI GATC 2 cut(s) 7, 153
Sau96I GGNCC 3 cut(s) 61, 367, 383
ScaI AGTACT 1 cut(s) 186
ScrFI CCNGG 3 cut(s) 121, 401, 461
SduI GDGCHC 1 cut(s) 553
SetI ASST 6 cut(s) 81, 144, 253, 412, 595, 619
SfaNI GCATC 2 cut(s) 153, 289
SinI GGWCC 2 cut(s) 61, 367
SmiMI CAYNNNNRTG 3 cut(s) 69, 174, 278
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SphI GCATGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 3 cut(s) 119, 399, 459
TaaI ACNGT 1 cut(s) 563
TaqI TCGA 1 cut(s) 469
TatI WGTACW 2 cut(s) 106, 184
TfiI GAWTC 2 cut(s) 24, 466
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 1 cut(s) 34
TseI GCWGC 3 cut(s) 76, 79, 308
TspDTI ATGAA 2 cut(s) 81, 195
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 61, 367
XceI RCATGY 2 cut(s) 74, 308
XspI CTAG 1 cut(s) 618
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.