RchiOBHm_Chr5g0003091
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006162
Physical Location & Seq
Reverse (-)
1844198 .. 1846478
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28442

Sequence Viewer

Length: 921 bp
ATGTCTTCTACAATGGATGATCGTTCTAAAAGTGGATTCACTGCTCACCAGATAGGCCAGTTGTACCATTTGGTCCATGAACATGTGCAGCTGCTTATTCAAGTATTTTCTCTGTGTGTACTTGATAACTCCAGGCAACATATTGCCTCTCAGGTTCAGAGATTGATCTGTGAGATGCTCCACAAGCGTGATGAAGTACTGGCATGGAAAAATGTACCATATCCAAACATTTGCTTTTGCCCATCAATGCCAACTGAAACACCTCAATCCTACCCGATACAAAGCACTTTAGTGTCATCCCACACATCTGATGCGCATGCAGCGTCTTCTCCTTCCAATAAGCAGATGTTAGTTTCCCCAAATGTCTCTCCTTTCTGGGTGCCTTCTGTAAATGGCCCTGTGCTATCTGTCCTGGATGTAGCTCCACTTAGTTTGATTGGGAGATACACGGATGATATTGATACTGCTGTCCAGGGGAATCGACGGCGTTTCAAGGAAACTATTTCTGATATTTGCCTTGAAAAAGAGCCTTTGTTTCCCCTTCCTAACTTCCCATCATGTGCTCAAGCCTGTGAAGTTGTAAGTGGGATGGGTTCCTCAGCTGTCAATGTGGTTCCATCTTCACCTAGTCAACCACCAAAGAAGTCACTGGCTACAGCAATTGTTGAAAGTACCAAGAAGCAATCAAGTGCTTTAGTCCCAAGGGAAATCGCAAACTTGGCCCAGAGATTTTATCCTCTGTTCAATCCAGCATTATATCCCCATAAGCCACCCCGCGCCCCCCTGCAGCTGTCACATCGGGTGCTTTACACTGATGCAGAAGATGAATTATTAGCATTGGGGTTAATGGAATATAATACTGATTGGAAGGCAATCCAACAACGTTTTCTTCCTTGCAAATCTAAGCACCAGTGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

306

Amino Acids

34.01

Weight (kDa)

7.62

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 1 cut(s) 777
AciI CCGC 1 cut(s) 775
AclI AACGTT 1 cut(s) 883
AfaI GTAC 5 cut(s) 65, 120, 198, 216, 673
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 5 cut(s) 101, 493, 521, 668, 745
AjnI CCWGG 3 cut(s) 131, 411, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AleI CACNNNNGTG 2 cut(s) 186, 290
AluBI AGCT 4 cut(s) 91, 422, 602, 790
AluI AGCT 4 cut(s) 91, 422, 602, 790
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 1 cut(s) 370
AlwNI CAGNNNCTG 1 cut(s) 916
AoxI GGCC 3 cut(s) 55, 394, 720
ApeKI GCWGC 4 cut(s) 88, 91, 320, 787
AspLEI GCGC 2 cut(s) 316, 779
AspS9I GGNCC 3 cut(s) 73, 395, 721
AsuHPI GGTGA 2 cut(s) 38, 615
AvaII GGWCC 1 cut(s) 73
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanI GGYRCC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 565
BbvCI CCTCAGC 1 cut(s) 598
BbvI GCAGC 4 cut(s) 78, 100, 332, 799
BccI CCATC 4 cut(s) 250, 562, 583, 625
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 3 cut(s) 133, 413, 473
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 3 cut(s) 654, 785, 917
BisI GCNGC 4 cut(s) 89, 92, 321, 788
BlsI GCNGC 4 cut(s) 90, 93, 322, 789
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 133, 413, 473
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 73, 395, 721
BmiI GGNNCC 3 cut(s) 381, 595, 615
BmrFI CCNGG 3 cut(s) 133, 413, 473
BmsI GCATC 3 cut(s) 165, 301, 805
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 472, 701
Bse1I ACTGG 4 cut(s) 58, 204, 654, 910
BseBI CCWGG 3 cut(s) 133, 413, 473
BseDI CCNNGG 2 cut(s) 472, 701
BseGI GGATG 5 cut(s) 22, 296, 421, 457, 594
BseMII CTCAG 2 cut(s) 164, 612
BseNI ACTGG 4 cut(s) 58, 204, 654, 910
BseXI GCAGC 4 cut(s) 78, 100, 332, 799
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 3 cut(s) 57, 396, 722
BshNI GGYRCC 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 565
BslFI GGGAC 1 cut(s) 683
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 683
BsnI GGCC 3 cut(s) 57, 396, 722
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 2 cut(s) 19, 165
BspACI CCGC 1 cut(s) 775
BspANI GGCC 3 cut(s) 57, 396, 722
BspCNI CTCAG 2 cut(s) 163, 611
BspFNI CGCG 1 cut(s) 777
BspLI GGNNCC 3 cut(s) 381, 595, 615
BspMAI CTGCAG 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 4 cut(s) 58, 204, 654, 910
BssECI CCNNGG 2 cut(s) 472, 701
BssMI GATC 2 cut(s) 19, 165
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 133, 413, 473
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 150, 428, 598, 903
BstF5I GGATG 5 cut(s) 22, 296, 421, 457, 594
BstFNI CGCG 1 cut(s) 777
BstHHI GCGC 2 cut(s) 316, 779
BstKTI GATC 2 cut(s) 22, 168
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 2 cut(s) 19, 165
BstMWI GCNNNNNNNGC 3 cut(s) 184, 320, 719
BstNI CCWGG 3 cut(s) 133, 413, 473
BstNSI RCATGY 2 cut(s) 86, 320
BstSCI CCNGG 3 cut(s) 131, 411, 471
BstSFI CTRYAG 3 cut(s) 654, 785, 917
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 4 cut(s) 78, 100, 332, 799
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 57, 396, 722
BtsCI GGATG 5 cut(s) 22, 296, 421, 457, 594
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 4 cut(s) 39, 647, 810, 917
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 916
CfoI GCGC 2 cut(s) 316, 779
Cfr13I GGNCC 3 cut(s) 73, 395, 721
CseI GACGC 1 cut(s) 312
Csp6I GTAC 5 cut(s) 64, 119, 197, 215, 672
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 5 cut(s) 77, 83, 204, 317, 558
CviQI GTAC 5 cut(s) 64, 119, 197, 215, 672
DdeI CTNAG 4 cut(s) 150, 428, 598, 903
DpnI GATC 2 cut(s) 21, 167
DpnII GATC 2 cut(s) 19, 165
Eco130I CCWWGG 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 73
EcoRII CCWGG 3 cut(s) 131, 411, 471
EcoT14I CCWWGG 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 5 cut(s) 80, 86, 207, 320, 561
FaqI GGGAC 1 cut(s) 683
FatI CATG 5 cut(s) 76, 82, 203, 316, 557
FauI CCCGC 1 cut(s) 782
Fnu4HI GCNGC 4 cut(s) 89, 92, 321, 788
FokI GGATG 5 cut(s) 29, 283, 428, 464, 601
Fsp4HI GCNGC 4 cut(s) 89, 92, 321, 788
FspAI RTGCGCAY 1 cut(s) 315
FspBI CTAG 1 cut(s) 627
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 2 cut(s) 315, 778
GluI GCNGC 4 cut(s) 89, 92, 321, 788
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 3 cut(s) 57, 396, 722
HgaI GACGC 1 cut(s) 312
HhaI GCGC 2 cut(s) 316, 779
Hin1II CATG 5 cut(s) 80, 86, 207, 320, 561
Hin6I GCGC 2 cut(s) 314, 777
HinP1I GCGC 2 cut(s) 314, 777
HincII GTYRAC 1 cut(s) 632
HindII GTYRAC 1 cut(s) 632
HinfI GANTC 2 cut(s) 36, 478
HphI GGTGA 2 cut(s) 38, 615
Hpy166II GTNNAC 2 cut(s) 119, 632
Hpy188I TCNGA 3 cut(s) 159, 310, 508
Hpy8I GTNNAC 2 cut(s) 119, 632
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 4 cut(s) 342, 393, 551, 862
HpyCH4IV ACGT 1 cut(s) 883
HpyCH4V TGCA 5 cut(s) 88, 320, 787, 818, 897
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 320, 719
HpyF3I CTNAG 4 cut(s) 150, 428, 598, 903
HpySE526I ACGT 1 cut(s) 883
Hsp92II CATG 5 cut(s) 80, 86, 207, 320, 561
HspAI GCGC 2 cut(s) 314, 777
Kzo9I GATC 2 cut(s) 19, 165
LmnI GCTCC 2 cut(s) 183, 427
Lsp1109I GCAGC 4 cut(s) 78, 100, 332, 799
LweI GCATC 3 cut(s) 165, 301, 805
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 883
MaeIII GTNAC 2 cut(s) 645, 792
MalI GATC 2 cut(s) 21, 167
MboI GATC 2 cut(s) 19, 165
MboII GAAGA 4 cut(s) 318, 612, 833, 881
MfeI CAATTG 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 2 cut(s) 660, 827
MmeI TCCRAC 1 cut(s) 901
MnlI CCTC 4 cut(s) 157, 273, 607, 747
MseI TTAA 1 cut(s) 845
MslI CAYNNNNRTG 3 cut(s) 81, 186, 290
MspA1I CMGCKG 3 cut(s) 91, 602, 790
MspR9I CCNGG 3 cut(s) 133, 413, 473
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 3 cut(s) 133, 413, 473
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 3 cut(s) 184, 320, 719
NdeII GATC 2 cut(s) 19, 165
NlaIII CATG 5 cut(s) 80, 86, 207, 320, 561
NlaIV GGNNCC 3 cut(s) 381, 595, 615
NmuCI GTSAC 2 cut(s) 645, 792
NsbI TGCGCA 1 cut(s) 315
NspI RCATGY 2 cut(s) 86, 320
OliI CACNNNNGTG 2 cut(s) 186, 290
PaeI GCATGC 1 cut(s) 320
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 2 cut(s) 36, 478
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 4 cut(s) 90, 93, 322, 789
PscI ACATGT 1 cut(s) 82
Psp1406I AACGTT 1 cut(s) 883
Psp6I CCWGG 3 cut(s) 131, 411, 471
PspGI CCWGG 3 cut(s) 131, 411, 471
PspN4I GGNNCC 3 cut(s) 381, 595, 615
PspPI GGNCC 3 cut(s) 73, 395, 721
PstI CTGCAG 1 cut(s) 789
PstNI CAGNNNCTG 1 cut(s) 916
PvuII CAGCTG 3 cut(s) 91, 602, 790
RsaI GTAC 5 cut(s) 65, 120, 198, 216, 673
RsaNI GTAC 5 cut(s) 64, 119, 197, 215, 672
RseI CAYNNNNRTG 3 cut(s) 81, 186, 290
SaqAI TTAA 1 cut(s) 845
SatI GCNGC 4 cut(s) 89, 92, 321, 788
Sau3AI GATC 2 cut(s) 19, 165
Sau96I GGNCC 3 cut(s) 73, 395, 721
ScaI AGTACT 1 cut(s) 198
ScrFI CCNGG 3 cut(s) 133, 413, 473
SduI GDGCHC 1 cut(s) 565
SetI ASST 8 cut(s) 93, 156, 265, 424, 604, 628, 792, 886
SfaNI GCATC 3 cut(s) 165, 301, 805
SfcI CTRYAG 3 cut(s) 654, 785, 917
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 3 cut(s) 81, 186, 290
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
SphI GCATGC 1 cut(s) 320
Sse9I AATT 2 cut(s) 660, 827
SsiI CCGC 1 cut(s) 775
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 3 cut(s) 131, 411, 471
StyI CCWWGG 1 cut(s) 701
TaiI ACGT 1 cut(s) 886
TaqI TCGA 1 cut(s) 481
TasI AATT 2 cut(s) 660, 827
TatI WGTACW 2 cut(s) 118, 196
TfiI GAWTC 2 cut(s) 36, 478
Tru1I TTAA 1 cut(s) 845
Tru9I TTAA 1 cut(s) 845
TscAI CASTG 4 cut(s) 46, 654, 817, 917
TseFI GTSAC 2 cut(s) 645, 792
TseI GCWGC 4 cut(s) 88, 91, 320, 787
Tsp45I GTSAC 2 cut(s) 645, 792
TspDTI ATGAA 3 cut(s) 93, 207, 840
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 4 cut(s) 46, 654, 817, 917
VpaK11BI GGWCC 1 cut(s) 73
XceI RCATGY 2 cut(s) 86, 320
XspI CTAG 1 cut(s) 627
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.