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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64570 |
| fragaria_vesca | FvH4_3g02070 |
| malus_domestica | MD05G1346800.v1.1 MD05G1347100.v1.1 MD05G1347200.v1.1 MD10G1321400.v1.1 |
| prunus_persica | Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 |
| pyrus_communis | pycom05g31490 pycom10g27210 |
| rosa_chinensis | RchiOBHm_Chr5g0002971 RchiOBHm_Chr5g0003031 RchiOBHm_Chr5g0003091 |
| rosa_laevigata | RLG00000031075 |
| rosa_multiflora | Rmu_sc0000146.1_g000022 Rmu_sc0013603.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00072910 |
| rosa_rugosa | Rorug04G0400900 |
| rosa_samantha | Rh5AG024000 Rh5AG025000 Rh5BG026700 Rh5CG026800 Rh5CG027800 Rh5DG025300 |
| rosa_wichuraiana | Rw5G002270 Rw5G002320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1500 |
| AarI | CACCTGC | 3 cut(s) | 391, 850, 1760 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1594, 2737 |
| AatII | GACGTC | 1 cut(s) | 2422 |
| Acc36I | ACCTGC | 6 cut(s) | 391, 850, 1760, 2985, 3040, 3211 |
| Acc65I | GGTACC | 1 cut(s) | 1850 |
| AccB1I | GGYRCC | 4 cut(s) | 898, 1850, 2566, 4089 |
| AccII | CGCG | 4 cut(s) | 645, 1925, 3332, 3887 |
| AclWI | GGATC | 6 cut(s) | 523, 1541, 2747, 2797, 3704, 4018 |
| AcoI | YGGCCR | 4 cut(s) | 422, 958, 2024, 3888 |
| AcuI | CTGAAG | 5 cut(s) | 2116, 2363, 2582, 2934, 3144 |
| AcyI | GRCGYC | 1 cut(s) | 2419 |
| AfaI | GTAC | 9 cut(s) | 654, 672, 705, 1198, 1852, 2667, 2976, 2999, 3376 |
| AflII | CTTAAG | 1 cut(s) | 1490 |
| AflIII | ACRYGT | 2 cut(s) | 538, 4048 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3409 |
| AhlI | ACTAGT | 2 cut(s) | 1019, 2059 |
| AjiI | CACGTC | 1 cut(s) | 1865 |
| AjnI | CCWGG | 6 cut(s) | 44, 606, 1813, 2400, 3507, 3822 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3021, 3053 |
| Alw21I | GWGCWC | 2 cut(s) | 2038, 3455 |
| Alw26I | GTCTC | 3 cut(s) | 1804, 2122, 3635 |
| AlwI | GGATC | 6 cut(s) | 523, 1541, 2747, 2797, 3704, 4018 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2168 |
| Ama87I | CYCGRG | 2 cut(s) | 86, 3861 |
| ApaI | GGGCCC | 1 cut(s) | 52 |
| ApeKI | GCWGC | 7 cut(s) | 544, 1178, 1392, 2192, 2195, 2445, 3395 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3374, 3406, 3613, 3645, 3741, 3773 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 445, 846, 1908, 2695 |
| Asp718I | GGTACC | 1 cut(s) | 1850 |
| AspLEI | GCGC | 3 cut(s) | 645, 3332, 3334 |
| AsuC2I | CCSGG | 3 cut(s) | 2408, 3812, 3818 |
| AsuHPI | GGTGA | 8 cut(s) | 194, 200, 1440, 1784, 2848, 3029, 3332, 3744 |
| AsuII | TTCGAA | 1 cut(s) | 3934 |
| AsuNHI | GCTAGC | 1 cut(s) | 2068 |
| AvaI | CYCGRG | 2 cut(s) | 86, 3861 |
| AvaII | GGWCC | 3 cut(s) | 914, 2244, 3512 |
| AxyI | CCTNAGG | 1 cut(s) | 3258 |
| BaeGI | GKGCMC | 3 cut(s) | 52, 577, 2771 |
| BalI | TGGCCA | 1 cut(s) | 424 |
| BanI | GGYRCC | 4 cut(s) | 898, 1850, 2566, 4089 |
| BanII | GRGCYC | 2 cut(s) | 52, 2038 |
| BauI | CACGAG | 2 cut(s) | 2583, 4223 |
| BbsI | GAAGAC | 3 cut(s) | 349, 453, 1347 |
| Bbv12I | GWGCWC | 2 cut(s) | 2038, 3455 |
| BbvCI | CCTCAGC | 2 cut(s) | 2493, 3805 |
| BbvI | GCAGC | 7 cut(s) | 556, 1165, 1379, 2179, 2182, 2457, 3382 |
| BceAI | ACGGC | 4 cut(s) | 945, 2011, 3613, 3812 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1370, 1404, 1748, 1782 |
| BciT130I | CCWGG | 6 cut(s) | 46, 608, 1815, 2402, 3509, 3824 |
| BciVI | GTATCC | 1 cut(s) | 3680 |
| BcnI | CCSGG | 3 cut(s) | 2408, 3812, 3818 |
| BcoDI | GTCTC | 3 cut(s) | 1804, 2122, 3635 |
| BcuI | ACTAGT | 2 cut(s) | 1019, 2059 |
| BfmI | CTRYAG | 4 cut(s) | 727, 1458, 2443, 4249 |
| BfrI | CTTAAG | 1 cut(s) | 1490 |
| BfuAI | ACCTGC | 6 cut(s) | 391, 850, 1760, 2985, 3040, 3211 |
| BfuI | GTATCC | 1 cut(s) | 3680 |
| BglII | AGATCT | 1 cut(s) | 3214 |
| BisI | GCNGC | 9 cut(s) | 545, 1179, 1393, 1631, 2193, 2196, 2446, 3396, 3888 |
| BlsI | GCNGC | 9 cut(s) | 546, 1180, 1394, 1632, 2194, 2197, 2447, 3397, 3889 |
| BmcAI | AGTACT | 1 cut(s) | 654 |
| Bme1390I | CCNGG | 9 cut(s) | 46, 608, 1815, 2402, 2408, 3509, 3812, 3818, 3824 |
| Bme18I | GGWCC | 3 cut(s) | 914, 2244, 3512 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3409 |
| BmeT110I | CYCGRG | 2 cut(s) | 86, 3861 |
| BmgBI | CACGTC | 1 cut(s) | 1865 |
| BmrFI | CCNGG | 9 cut(s) | 46, 608, 1815, 2402, 2408, 3509, 3812, 3818, 3824 |
| BmrI | ACTGGG | 2 cut(s) | 3823, 4170 |
| BmtI | GCTAGC | 1 cut(s) | 2072 |
| BmuI | ACTGGG | 2 cut(s) | 3823, 4170 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2422, 3799 |
| BpiI | GAAGAC | 3 cut(s) | 349, 453, 1347 |
| BpmI | CTGGAG | 2 cut(s) | 620, 2196 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2493, 3805 |
| Bpu14I | TTCGAA | 1 cut(s) | 3934 |
| BpuEI | CTTGAG | 2 cut(s) | 299, 2685 |
| BpuMI | CCSGG | 3 cut(s) | 2408, 3812, 3818 |
| BsaAI | YACGTR | 2 cut(s) | 773, 1012 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2373, 2604 |
| BsaHI | GRCGYC | 1 cut(s) | 2419 |
| BsaI | GGTCTC | 2 cut(s) | 1804, 3635 |
| BsaWI | WCCGGW | 2 cut(s) | 1317, 2074 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1801, 1831 |
| Bse21I | CCTNAGG | 1 cut(s) | 3258 |
| Bse3DI | GCAATG | 3 cut(s) | 2924, 3198, 3613 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2373, 2604 |
| BseBI | CCWGG | 6 cut(s) | 46, 608, 1815, 2402, 3509, 3824 |
| BseJI | GATNNNNATC | 2 cut(s) | 2373, 2604 |
| BseMI | GCAATG | 3 cut(s) | 2924, 3198, 3613 |
| BseMII | CTCAG | 9 cut(s) | 618, 1097, 1604, 2507, 3272, 3440, 3494, 3819, 4200 |
| BsePI | GCGCGC | 1 cut(s) | 3330 |
| BseRI | GAGGAG | 2 cut(s) | 1478, 3122 |
| BseSI | GKGCMC | 3 cut(s) | 52, 577, 2771 |
| BseX3I | CGGCCG | 1 cut(s) | 2024 |
| BseXI | GCAGC | 7 cut(s) | 556, 1165, 1379, 2179, 2182, 2457, 3382 |
| BseYI | CCCAGC | 1 cut(s) | 4217 |
| BsgI | GTGCAG | 2 cut(s) | 563, 1764 |
| Bsh1236I | CGCG | 4 cut(s) | 645, 1925, 3332, 3887 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2027, 3637 |
| BshNI | GGYRCC | 4 cut(s) | 898, 1850, 2566, 4089 |
| BsiEI | CGRYCG | 2 cut(s) | 2027, 3637 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2038, 3455 |
| BsiHKCI | CYCGRG | 2 cut(s) | 86, 3861 |
| BsiSI | CCGG | 5 cut(s) | 1318, 2075, 2408, 3812, 3818 |
| BsmAI | GTCTC | 3 cut(s) | 1804, 2122, 3635 |
| Bso31I | GGTCTC | 2 cut(s) | 1804, 3635 |
| BsoBI | CYCGRG | 2 cut(s) | 86, 3861 |
| Bsp119I | TTCGAA | 1 cut(s) | 3934 |
| Bsp120I | GGGCCC | 1 cut(s) | 48 |
| Bsp1286I | GDGCHC | 5 cut(s) | 52, 577, 2038, 2771, 3455 |
| Bsp19I | CCATGG | 1 cut(s) | 3891 |
| BspCNI | CTCAG | 9 cut(s) | 619, 1096, 1603, 2506, 3271, 3441, 3495, 3818, 4201 |
| BspFNI | CGCG | 4 cut(s) | 645, 1925, 3332, 3887 |
| BspHI | TCATGA | 2 cut(s) | 1786, 2331 |
| BspMAI | CTGCAG | 2 cut(s) | 1462, 2447 |
| BspMI | ACCTGC | 6 cut(s) | 391, 850, 1760, 2985, 3040, 3211 |
| BspOI | GCTAGC | 1 cut(s) | 2072 |
| BspPI | GGATC | 6 cut(s) | 523, 1541, 2747, 2797, 3704, 4018 |
| BspQI | GCTCTTC | 2 cut(s) | 468, 1914 |
| BspT104I | TTCGAA | 1 cut(s) | 3934 |
| BspT107I | GGYRCC | 4 cut(s) | 898, 1850, 2566, 4089 |
| BspTI | CTTAAG | 1 cut(s) | 1490 |
| BspTNI | GGTCTC | 2 cut(s) | 1804, 3635 |
| BsrDI | GCAATG | 3 cut(s) | 2924, 3198, 3613 |
| BssHII | GCGCGC | 1 cut(s) | 3330 |
| BssNI | GRCGYC | 1 cut(s) | 2419 |
| BssSI | CACGAG | 2 cut(s) | 2583, 4223 |
| BssT1I | CCWWGG | 3 cut(s) | 744, 3625, 3891 |
| Bst2BI | CACGAG | 2 cut(s) | 2583, 4223 |
| Bst2UI | CCWGG | 6 cut(s) | 46, 608, 1815, 2402, 3509, 3824 |
| Bst6I | CTCTTC | 6 cut(s) | 264, 468, 1914, 2353, 3048, 3903 |
| BstACI | GRCGYC | 1 cut(s) | 2419 |
| BstAFI | CTTAAG | 1 cut(s) | 1490 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3781 |
| BstBAI | YACGTR | 2 cut(s) | 773, 1012 |
| BstBI | TTCGAA | 1 cut(s) | 3934 |
| BstC8I | GCNNGC | 6 cut(s) | 52, 2070, 2937, 2966, 3332, 3960 |
| BstDSI | CCRYGG | 2 cut(s) | 3885, 3891 |
| BstEII | GGTNACC | 1 cut(s) | 3017 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2526 |
| BstFNI | CGCG | 4 cut(s) | 645, 1925, 3332, 3887 |
| BstHHI | GCGC | 3 cut(s) | 645, 3332, 3334 |
| BstMAI | GTCTC | 3 cut(s) | 1804, 2122, 3635 |
| BstMCI | CGRYCG | 2 cut(s) | 2027, 3637 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 640, 1799, 2261, 2451, 3781 |
| BstNI | CCWGG | 6 cut(s) | 46, 608, 1815, 2402, 3509, 3824 |
| BstNSI | RCATGY | 3 cut(s) | 542, 2658, 4052 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2422, 3799 |
| BstPI | GGTNACC | 1 cut(s) | 3017 |
| BstSCI | CCNGG | 9 cut(s) | 44, 606, 1813, 2400, 2406, 3507, 3810, 3816, 3822 |
| BstSFI | CTRYAG | 4 cut(s) | 727, 1458, 2443, 4249 |
| BstSLI | GKGCMC | 3 cut(s) | 52, 577, 2771 |
| BstUI | CGCG | 4 cut(s) | 645, 1925, 3332, 3887 |
| BstV1I | GCAGC | 7 cut(s) | 556, 1165, 1379, 2179, 2182, 2457, 3382 |
| BstV2I | GAAGAC | 3 cut(s) | 349, 453, 1347 |
| BstX2I | RGATCY | 5 cut(s) | 1546, 2802, 3214, 3696, 4010 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 881, 2543 |
| BstYI | RGATCY | 5 cut(s) | 1546, 2802, 3214, 3696, 4010 |
| BstZI | CGGCCG | 1 cut(s) | 2024 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3258 |
| BsuI | GTATCC | 1 cut(s) | 3680 |
| BtgI | CCRYGG | 2 cut(s) | 3885, 3891 |
| BtrI | CACGTC | 1 cut(s) | 1865 |
| BtsI | GCAGTG | 5 cut(s) | 165, 495, 520, 1434, 1574 |
| BveI | ACCTGC | 6 cut(s) | 391, 850, 1760, 2985, 3040, 3211 |
| Cac8I | GCNNGC | 6 cut(s) | 52, 2070, 2937, 2966, 3332, 3960 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2168 |
| CciI | TCATGA | 2 cut(s) | 1786, 2331 |
| CfoI | GCGC | 3 cut(s) | 645, 3332, 3334 |
| Cfr42I | CCGCGG | 1 cut(s) | 3888 |
| CseI | GACGC | 2 cut(s) | 1914, 3502 |
| CsiI | ACCWGGT | 1 cut(s) | 1813 |
| Csp6I | GTAC | 9 cut(s) | 653, 671, 704, 1197, 1851, 2666, 2975, 2998, 3375 |
| CviQI | GTAC | 9 cut(s) | 653, 671, 704, 1197, 1851, 2666, 2975, 2998, 3375 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1594, 2737 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3409 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1594, 2737 |
| EaeI | YGGCCR | 4 cut(s) | 422, 958, 2024, 3888 |
| EagI | CGGCCG | 1 cut(s) | 2024 |
| Eam1104I | CTCTTC | 6 cut(s) | 264, 468, 1914, 2353, 3048, 3903 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3409 |
| EarI | CTCTTC | 6 cut(s) | 264, 468, 1914, 2353, 3048, 3903 |
| Ecl136II | GAGCTC | 1 cut(s) | 2036 |
| EclXI | CGGCCG | 1 cut(s) | 2024 |
| Eco130I | CCWWGG | 3 cut(s) | 744, 3625, 3891 |
| Eco147I | AGGCCT | 1 cut(s) | 1793 |
| Eco24I | GRGCYC | 2 cut(s) | 52, 2038 |
| Eco31I | GGTCTC | 2 cut(s) | 1804, 3635 |
| Eco47I | GGWCC | 3 cut(s) | 914, 2244, 3512 |
| Eco52I | CGGCCG | 1 cut(s) | 2024 |
| Eco53kI | GAGCTC | 1 cut(s) | 2036 |
| Eco57I | CTGAAG | 5 cut(s) | 2116, 2363, 2582, 2934, 3144 |
| Eco81I | CCTNAGG | 1 cut(s) | 3258 |
| Eco88I | CYCGRG | 2 cut(s) | 86, 3861 |
| Eco91I | GGTNACC | 1 cut(s) | 3017 |
| EcoICRI | GAGCTC | 1 cut(s) | 2036 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2526 |
| EcoO109I | RGGNCCY | 5 cut(s) | 48, 2138, 2244, 2404, 3512 |
| EcoO65I | GGTNACC | 1 cut(s) | 3017 |
| EcoRI | GAATTC | 2 cut(s) | 713, 3276 |
| EcoRII | CCWGG | 6 cut(s) | 44, 606, 1813, 2400, 3507, 3822 |
| EcoT14I | CCWWGG | 3 cut(s) | 744, 3625, 3891 |
| EcoT38I | GRGCYC | 2 cut(s) | 52, 2038 |
| ErhI | CCWWGG | 3 cut(s) | 744, 3625, 3891 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 261, 293 |
| FauI | CCCGC | 3 cut(s) | 59, 3892, 3897 |
| FauNDI | CATATG | 1 cut(s) | 1520 |
| Fnu4HI | GCNGC | 9 cut(s) | 545, 1179, 1393, 1631, 2193, 2196, 2446, 3396, 3888 |
| FriOI | GRGCYC | 2 cut(s) | 52, 2038 |
| Fsp4HI | GCNGC | 9 cut(s) | 545, 1179, 1393, 1631, 2193, 2196, 2446, 3396, 3888 |
| GlaI | GCGC | 3 cut(s) | 644, 3331, 3333 |
| GluI | GCNGC | 9 cut(s) | 545, 1179, 1393, 1631, 2193, 2196, 2446, 3396, 3888 |
| GsaI | CCCAGC | 1 cut(s) | 4221 |
| GsuI | CTGGAG | 2 cut(s) | 620, 2196 |
| HapII | CCGG | 5 cut(s) | 1318, 2075, 2408, 3812, 3818 |
| HgaI | GACGC | 2 cut(s) | 1914, 3502 |
| HhaI | GCGC | 3 cut(s) | 645, 3332, 3334 |
| Hin1I | GRCGYC | 1 cut(s) | 2419 |
| Hin6I | GCGC | 3 cut(s) | 643, 3330, 3332 |
| HinP1I | GCGC | 3 cut(s) | 643, 3330, 3332 |
| HincII | GTYRAC | 2 cut(s) | 201, 1154 |
| HindII | GTYRAC | 2 cut(s) | 201, 1154 |
| HindIII | AAGCTT | 1 cut(s) | 2835 |
| HpaII | CCGG | 5 cut(s) | 1318, 2075, 2408, 3812, 3818 |
| HphI | GGTGA | 8 cut(s) | 194, 200, 1440, 1784, 2848, 3029, 3332, 3744 |
| Hpy166II | GTNNAC | 4 cut(s) | 38, 201, 1154, 3487 |
| Hpy8I | GTNNAC | 4 cut(s) | 38, 201, 1154, 3487 |
| Hpy99I | CGWCG | 7 cut(s) | 650, 1005, 1866, 2308, 3532, 3795, 3798 |
| HpyCH4IV | ACGT | 5 cut(s) | 772, 1011, 1864, 2306, 2419 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 640, 1799, 2261, 2451, 3781 |
| HpySE526I | ACGT | 5 cut(s) | 772, 1011, 1864, 2306, 2419 |
| Hsp92I | GRCGYC | 1 cut(s) | 2419 |
| HspAI | GCGC | 3 cut(s) | 643, 3330, 3332 |
| KpnI | GGTACC | 1 cut(s) | 1854 |
| KspI | CCGCGG | 1 cut(s) | 3888 |
| LguI | GCTCTTC | 2 cut(s) | 468, 1914 |
| LmnI | GCTCC | 7 cut(s) | 335, 639, 946, 1304, 2890, 3617, 3862 |
| Lsp1109I | GCAGC | 7 cut(s) | 556, 1165, 1379, 2179, 2182, 2457, 3382 |
| MabI | ACCWGGT | 1 cut(s) | 1813 |
| MaeII | ACGT | 5 cut(s) | 772, 1011, 1864, 2306, 2419 |
| MaeIII | GTNAC | 9 cut(s) | 273, 284, 962, 1007, 1170, 1926, 2854, 3017, 4051 |
| MflI | RGATCY | 5 cut(s) | 1546, 2802, 3214, 3696, 4010 |
| MhlI | GDGCHC | 5 cut(s) | 52, 577, 2038, 2771, 3455 |
| MlsI | TGGCCA | 1 cut(s) | 424 |
| MluNI | TGGCCA | 1 cut(s) | 424 |
| MlyI | GAGTC | 4 cut(s) | 1582, 2725, 3059, 3398 |
| MmeI | TCCRAC | 4 cut(s) | 2212, 2708, 3551, 4040 |
| Mox20I | TGGCCA | 1 cut(s) | 424 |
| MroXI | GAANNNNTTC | 4 cut(s) | 445, 846, 1908, 2695 |
| MscI | TGGCCA | 1 cut(s) | 424 |
| MseI | TTAA | 7 cut(s) | 431, 1491, 2064, 2504, 2874, 3870, 3942 |
| MslI | CAYNNNNRTG | 2 cut(s) | 537, 2541 |
| Msp20I | TGGCCA | 1 cut(s) | 424 |
| MspA1I | CMGCKG | 2 cut(s) | 986, 3887 |
| MspCI | CTTAAG | 1 cut(s) | 1490 |
| MspI | CCGG | 5 cut(s) | 1318, 2075, 2408, 3812, 3818 |
| MspR9I | CCNGG | 9 cut(s) | 46, 608, 1815, 2402, 2408, 3509, 3812, 3818, 3824 |
| MvaI | CCWGG | 6 cut(s) | 46, 608, 1815, 2402, 3509, 3824 |
| MvnI | CGCG | 4 cut(s) | 645, 1925, 3332, 3887 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 640, 1799, 2261, 2451, 3781 |
| NciI | CCSGG | 3 cut(s) | 2408, 3812, 3818 |
| NcoI | CCATGG | 1 cut(s) | 3891 |
| NdeI | CATATG | 1 cut(s) | 1520 |
| NheI | GCTAGC | 1 cut(s) | 2068 |
| NmeAIII | GCCGAG | 3 cut(s) | 568, 1543, 3184 |
| NmuCI | GTSAC | 5 cut(s) | 284, 1170, 1926, 2854, 3017 |
| NspI | RCATGY | 3 cut(s) | 542, 2658, 4052 |
| NspV | TTCGAA | 1 cut(s) | 3934 |
| PaeR7I | CTCGAG | 1 cut(s) | 86 |
| PagI | TCATGA | 2 cut(s) | 1786, 2331 |
| PaqCI | CACCTGC | 3 cut(s) | 391, 850, 1760 |
| PauI | GCGCGC | 1 cut(s) | 3330 |
| PceI | AGGCCT | 1 cut(s) | 1793 |
| PciI | ACATGT | 2 cut(s) | 538, 4048 |
| PciSI | GCTCTTC | 2 cut(s) | 468, 1914 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1570, 2029 |
| PdmI | GAANNNNTTC | 4 cut(s) | 445, 846, 1908, 2695 |
| PflFI | GACNNNGTC | 1 cut(s) | 1924 |
| PkrI | GCNGC | 9 cut(s) | 546, 1180, 1394, 1632, 2194, 2197, 2447, 3397, 3889 |
| PleI | GAGTC | 4 cut(s) | 1582, 2725, 3059, 3398 |
| PpsI | GAGTC | 4 cut(s) | 1582, 2725, 3059, 3398 |
| Ppu21I | YACGTR | 2 cut(s) | 773, 1012 |
| PpuMI | RGGWCCY | 2 cut(s) | 2244, 3512 |
| PscI | ACATGT | 2 cut(s) | 538, 4048 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2422, 3799 |
| PsiI | TTATAA | 1 cut(s) | 1500 |
| Psp124BI | GAGCTC | 1 cut(s) | 2038 |
| Psp5II | RGGWCCY | 2 cut(s) | 2244, 3512 |
| Psp6I | CCWGG | 6 cut(s) | 44, 606, 1813, 2400, 3507, 3822 |
| PspEI | GGTNACC | 1 cut(s) | 3017 |
| PspFI | CCCAGC | 1 cut(s) | 4217 |
| PspGI | CCWGG | 6 cut(s) | 44, 606, 1813, 2400, 3507, 3822 |
| PspOMI | GGGCCC | 1 cut(s) | 48 |
| PspPPI | RGGWCCY | 2 cut(s) | 2244, 3512 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 766, 798 |
| PstI | CTGCAG | 2 cut(s) | 1462, 2447 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2168 |
| PsuI | RGATCY | 5 cut(s) | 1546, 2802, 3214, 3696, 4010 |
| PsyI | GACNNNGTC | 1 cut(s) | 1924 |
| PteI | GCGCGC | 1 cut(s) | 3330 |
| PvuII | CAGCTG | 1 cut(s) | 986 |
| RsaI | GTAC | 9 cut(s) | 654, 672, 705, 1198, 1852, 2667, 2976, 2999, 3376 |
| RsaNI | GTAC | 9 cut(s) | 653, 671, 704, 1197, 1851, 2666, 2975, 2998, 3375 |
| RseI | CAYNNNNRTG | 2 cut(s) | 537, 2541 |
| SacI | GAGCTC | 1 cut(s) | 2038 |
| SacII | CCGCGG | 1 cut(s) | 3888 |
| SapI | GCTCTTC | 2 cut(s) | 468, 1914 |
| SaqAI | TTAA | 7 cut(s) | 431, 1491, 2064, 2504, 2874, 3870, 3942 |
| SatI | GCNGC | 9 cut(s) | 545, 1179, 1393, 1631, 2193, 2196, 2446, 3396, 3888 |
| ScaI | AGTACT | 1 cut(s) | 654 |
| SchI | GAGTC | 4 cut(s) | 1582, 2725, 3059, 3398 |
| ScrFI | CCNGG | 9 cut(s) | 46, 608, 1815, 2402, 2408, 3509, 3812, 3818, 3824 |
| SduI | GDGCHC | 5 cut(s) | 52, 577, 2038, 2771, 3455 |
| SexAI | ACCWGGT | 1 cut(s) | 1813 |
| SfcI | CTRYAG | 4 cut(s) | 727, 1458, 2443, 4249 |
| Sfr274I | CTCGAG | 1 cut(s) | 86 |
| Sfr303I | CCGCGG | 1 cut(s) | 3888 |
| SfuI | TTCGAA | 1 cut(s) | 3934 |
| SgrBI | CCGCGG | 1 cut(s) | 3888 |
| SinI | GGWCC | 3 cut(s) | 914, 2244, 3512 |
| SlaI | CTCGAG | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 537, 2541 |
| SmlI | CTYRAG | 4 cut(s) | 86, 278, 1490, 2700 |
| SmoI | CTYRAG | 4 cut(s) | 86, 278, 1490, 2700 |
| SpeI | ACTAGT | 2 cut(s) | 1019, 2059 |
| SseBI | AGGCCT | 1 cut(s) | 1793 |
| SspI | AATATT | 2 cut(s) | 2989, 3268 |
| SstI | GAGCTC | 1 cut(s) | 2038 |
| StuI | AGGCCT | 1 cut(s) | 1793 |
| StyD4I | CCNGG | 9 cut(s) | 44, 606, 1813, 2400, 2406, 3507, 3810, 3816, 3822 |
| StyI | CCWWGG | 3 cut(s) | 744, 3625, 3891 |
| TaiI | ACGT | 5 cut(s) | 775, 1014, 1867, 2309, 2422 |
| TaqII | GACCGA | 3 cut(s) | 1772, 2731, 3623 |
| TatI | WGTACW | 1 cut(s) | 652 |
| TauI | GCSGC | 2 cut(s) | 1633, 3890 |
| Tru1I | TTAA | 7 cut(s) | 431, 1491, 2064, 2504, 2874, 3870, 3942 |
| Tru9I | TTAA | 7 cut(s) | 431, 1491, 2064, 2504, 2874, 3870, 3942 |
| TseFI | GTSAC | 5 cut(s) | 284, 1170, 1926, 2854, 3017 |
| TseI | GCWGC | 7 cut(s) | 544, 1178, 1392, 2192, 2195, 2445, 3395 |
| Tsp45I | GTSAC | 5 cut(s) | 284, 1170, 1926, 2854, 3017 |
| TspGWI | ACGGA | 1 cut(s) | 2903 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1924 |
| Vha464I | CTTAAG | 1 cut(s) | 1490 |
| VpaK11BI | GGWCC | 3 cut(s) | 914, 2244, 3512 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2526 |
| XbaI | TCTAGA | 1 cut(s) | 2324 |
| XceI | RCATGY | 3 cut(s) | 542, 2658, 4052 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1171 |
| XhoI | CTCGAG | 1 cut(s) | 86 |
| XmnI | GAANNNNTTC | 4 cut(s) | 445, 846, 1908, 2695 |
| ZraI | GACGTC | 1 cut(s) | 2420 |
| ZrmI | AGTACT | 1 cut(s) | 654 |