Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006162

Physical Location & Seq

Genomic Coordinates Forward (+)

46616056 .. 46617603

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1347100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACCATTGCTACAAATATGATTGCCATATGGAAAGTCATTGTCCCACATAGATATCCATCCTTGTTGCCTCGGCAATGGCGTATTGCTATTGGGACTCAGAAGTCATATAAGGACTGCCAAGCTGAAAAGTCTGGTGGAGAGAACAACGCAGATGGTTTGACCGAGAATAATGCAGGTGAAACTTATGTTCATGAGGCCTTTTTAGCAGACTGGAGACCGGGTATTTCCTGTGTAGAAAGAAGCCCTAATAGTGGTACCCTATCCAGAGGTGCTAACCATGAATGGGTAGATGTTTTTGGGCGTAAGGAAGTTCTTCGAGCCCAGACCGTGTCACAGTGTCCACATGGTCAATCTCAAATCACTGGTGTTAGACATTTTGCATCCAGTACCACACAAGCGAATCATTCGGTTTCTCAACTCTATCATCGGCCGTATCGAGCTCGTAGAACTAATGGCGCACAACTGGTTAAGCTAACTCCGGAATTGCCTCCTGTGAATCTTCCACCATCTGTTCGTGTAGTCTCACAATCTGCCTTCAGAGGCTCTTTACGTGGGGCATCTTCCACAGTTTCTGCTTCTGGAGGTGGTAGTGGTGCTGCTGCAACTCACAATCCCTTTTCTCAATCTAAAGTTGGAAGGTTCGGGACCTCTGATGCCATAACAGCTACACAGAATAAAAGTAGTTCTCTGAAAGACAGTGTTTTGACGTTGCATCCAGAAGATTCTAGAATTATCAAGGATAAATGTGTAAAGGAAGGAAGAGATGTTGATTCTGATCTTCAGATGCATCCTCTGCTGTTCCAGGCCCCAGAAGATGGACGTCTGTCCTATTTCCCGTTGAACTGCAGCAACAGCAATTCTAGTCCTTTCAGTTTTCTTTCAGCAAATCAGCCTCAGCTACATTTAAGCCTTTTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6

Protein Analysis

308

Amino Acids

33.43

Weight (kDa)

9.37

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64570
fragaria_vesca	FvH4_3g02070
malus_domestica	MD05G1346800.v1.1 MD05G1347100.v1.1 MD05G1347200.v1.1 MD10G1321400.v1.1
prunus_persica	Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1 Prupe.4G020900_v2.0.a1
pyrus_communis	pycom05g31490 pycom10g27210
rosa_chinensis	RchiOBHm_Chr5g0002971 RchiOBHm_Chr5g0003031 RchiOBHm_Chr5g0003091
rosa_laevigata	RLG00000031075
rosa_multiflora	Rmu_sc0000146.1_g000022 Rmu_sc0013603.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072910
rosa_rugosa	Rorug04G0400900
rosa_samantha	Rh5AG024000 Rh5AG025000 Rh5BG026700 Rh5CG026800 Rh5CG027800 Rh5DG025300
rosa_wichuraiana	Rw5G002270 Rw5G002320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
AasI	GACNNNNNNGTC	1 cut(s)	103
AatII	GACGTC	1 cut(s)	826
Acc36I	ACCTGC	1 cut(s)	167
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccIII	TCCGGA	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	523, 767
AcyI	GRCGYC	1 cut(s)	823
AfaI	GTAC	2 cut(s)	259, 391
AfiI	CCNNNNNNNGG	3 cut(s)	254, 286, 818
AgsI	TTSAA	1 cut(s)	844
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	5 cut(s)	125, 443, 475, 668, 901
AluI	AGCT	5 cut(s)	125, 443, 475, 668, 901
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	211, 529
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	481
AoxI	GGCC	3 cut(s)	198, 431, 807
ApeKI	GCWGC	3 cut(s)	599, 602, 849
Asp700I	GAANNNNTTC	1 cut(s)	315
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	648, 808
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	325, 445
Bbv12I	GWGCWC	1 cut(s)	445
BbvCI	CCTCAGC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	586, 589, 861
BccI	CCATC	4 cut(s)	67, 149, 517, 812
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	806
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	211, 529
BfaI	CTAG	2 cut(s)	729, 864
BfmI	CTRYAG	1 cut(s)	847
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	600, 603, 850
BlsI	GCNGC	3 cut(s)	601, 604, 851
Bme1390I	CCNGG	2 cut(s)	222, 806
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	648, 808
BmiI	GGNNCC	3 cut(s)	259, 649, 810
BmrFI	CCNGG	2 cut(s)	222, 806
BmsI	GCATC	6 cut(s)	392, 569, 646, 724, 777, 799
BoxI	GACNNNNGTC	1 cut(s)	826
BpmI	CTGGAG	2 cut(s)	235, 603
Bpu10I	CCTNAGC	1 cut(s)	897
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	554
BsaBI	GATNNNNATC	2 cut(s)	58, 777
BsaHI	GRCGYC	1 cut(s)	823
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 286, 818
Bse1I	ACTGG	4 cut(s)	218, 370, 387, 471
Bse3DI	GCAATG	2 cut(s)	6, 83
Bse8I	GATNNNNATC	2 cut(s)	58, 777
BseAI	TCCGGA	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	4 cut(s)	59, 383, 715, 790
BseJI	GATNNNNATC	2 cut(s)	58, 777
BseLI	CCNNNNNNNGG	3 cut(s)	254, 286, 818
BseMI	GCAATG	2 cut(s)	6, 83
BseMII	CTCAG	2 cut(s)	113, 911
BseNI	ACTGG	4 cut(s)	218, 370, 387, 471
BseX3I	CGGCCG	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	586, 589, 861
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	200, 433, 809
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	221, 482
BslFI	GGGAC	3 cut(s)	29, 109, 661
BslI	CCNNNNNNNGG	3 cut(s)	254, 286, 818
BsmAI	GTCTC	2 cut(s)	211, 529
BsmFI	GGGAC	3 cut(s)	29, 109, 661
BsnI	GGCC	3 cut(s)	200, 433, 809
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	325, 445
Bsp13I	TCCGGA	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	778
BspANI	GGCC	3 cut(s)	200, 433, 809
BspCNI	CTCAG	2 cut(s)	112, 910
BspEI	TCCGGA	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	259, 649, 810
BspMAI	CTGCAG	1 cut(s)	851
BspMI	ACCTGC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	6, 83
BsrI	ACTGG	4 cut(s)	218, 370, 387, 471
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	778
BssNI	GRCGYC	1 cut(s)	823
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	4 cut(s)	331, 339, 571, 701
Bst6I	CTCTTC	1 cut(s)	757
BstACI	GRCGYC	1 cut(s)	823
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	554
BstDEI	CTNAG	2 cut(s)	99, 897
BstF5I	GGATG	4 cut(s)	59, 383, 715, 790
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	1 cut(s)	781
BstMAI	GTCTC	2 cut(s)	211, 529
BstMBI	GATC	1 cut(s)	778
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 665, 796, 855
BstNI	CCWGG	1 cut(s)	806
BstPAI	GACNNNNGTC	1 cut(s)	826
BstSCI	CCNGG	2 cut(s)	220, 804
BstSFI	CTRYAG	1 cut(s)	847
BstV1I	GCAGC	3 cut(s)	586, 589, 861
BstZI	CGGCCG	1 cut(s)	431
BsuRI	GGCC	3 cut(s)	200, 433, 809
BtsCI	GGATG	4 cut(s)	59, 383, 715, 790
BtsIMutI	CAGTG	3 cut(s)	344, 363, 706
BveI	ACCTGC	1 cut(s)	167
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	648, 808
Csp6I	GTAC	2 cut(s)	258, 390
CviAII	CATG	3 cut(s)	194, 281, 347
CviQI	GTAC	2 cut(s)	258, 390
DdeI	CTNAG	2 cut(s)	99, 897
DpnI	GATC	1 cut(s)	780
DpnII	GATC	1 cut(s)	778
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	431
EagI	CGGCCG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
Ecl136II	GAGCTC	1 cut(s)	443
EclXI	CGGCCG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	2 cut(s)	325, 445
Eco31I	GGTCTC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	648
Eco52I	CGGCCG	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	523, 767
EcoICRI	GAGCTC	1 cut(s)	443
EcoO109I	RGGNCCY	2 cut(s)	648, 808
EcoRII	CCWGG	1 cut(s)	804
EcoRV	GATATC	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	792
EcoT38I	GRGCYC	2 cut(s)	325, 445
FaeI	CATG	3 cut(s)	197, 284, 350
FaqI	GGGAC	3 cut(s)	29, 109, 661
FatI	CATG	3 cut(s)	193, 280, 346
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	3 cut(s)	600, 603, 850
FokI	GGATG	4 cut(s)	46, 370, 702, 777
FriOI	GRGCYC	2 cut(s)	325, 445
Fsp4HI	GCNGC	3 cut(s)	600, 603, 850
FspBI	CTAG	2 cut(s)	729, 864
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	600, 603, 850
GsuI	CTGGAG	2 cut(s)	235, 603
HaeIII	GGCC	3 cut(s)	200, 433, 809
HapII	CCGG	2 cut(s)	221, 482
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	823
Hin1II	CATG	3 cut(s)	197, 284, 350
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	5 cut(s)	97, 403, 499, 725, 773
HpaII	CCGG	2 cut(s)	221, 482
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	6 cut(s)	102, 542, 655, 693, 778, 786
Hpy188III	TCNNGA	7 cut(s)	194, 267, 482, 582, 646, 719, 729
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	547, 633, 752
HpyCH4III	ACNGT	4 cut(s)	331, 339, 571, 701
HpyCH4IV	ACGT	3 cut(s)	553, 710, 823
HpyCH4V	TGCA	6 cut(s)	176, 383, 605, 715, 790, 849
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 665, 796, 855
HpyF3I	CTNAG	2 cut(s)	99, 897
HpySE526I	ACGT	3 cut(s)	553, 710, 823
Hsp92I	GRCGYC	1 cut(s)	823
Hsp92II	CATG	3 cut(s)	197, 284, 350
HspAI	GCGC	1 cut(s)	459
Kpn2I	TCCGGA	1 cut(s)	481
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	778
Lsp1109I	GCAGC	3 cut(s)	586, 589, 861
LweI	GCATC	6 cut(s)	392, 569, 646, 724, 777, 799
MaeI	CTAG	2 cut(s)	729, 864
MaeII	ACGT	3 cut(s)	553, 710, 823
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	1 cut(s)	780
MboI	GATC	1 cut(s)	778
MboII	GAAGA	7 cut(s)	308, 494, 555, 734, 773, 774, 827
MhlI	GDGCHC	2 cut(s)	325, 445
MluCI	AATT	3 cut(s)	485, 732, 859
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	9 cut(s)	81, 190, 263, 501, 536, 578, 661, 804, 906
Mph1103I	ATGCAT	1 cut(s)	792
MroI	TCCGGA	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	471, 908
MspI	CCGG	2 cut(s)	221, 482
MspR9I	CCNGG	2 cut(s)	222, 806
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	4 cut(s)	206, 665, 796, 855
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	1 cut(s)	778
NlaIII	CATG	3 cut(s)	197, 284, 350
NlaIV	GGNNCC	3 cut(s)	259, 649, 810
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	792
PagI	TCATGA	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	79, 436
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	4 cut(s)	403, 499, 725, 773
PflFI	GACNNNGTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	3 cut(s)	601, 604, 851
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	554
PpuMI	RGGWCCY	1 cut(s)	648
PshAI	GACNNNNGTC	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	3 cut(s)	259, 649, 810
PspPI	GGNCC	2 cut(s)	648, 808
PspPPI	RGGWCCY	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	851
PstNI	CAGNNNCTG	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	259, 391
RsaNI	GTAC	2 cut(s)	258, 390
SacI	GAGCTC	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	471, 908
SatI	GCNGC	3 cut(s)	600, 603, 850
Sau3AI	GATC	1 cut(s)	778
Sau96I	GGNCC	2 cut(s)	648, 808
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	222, 806
SduI	GDGCHC	2 cut(s)	325, 445
SfaNI	GCATC	6 cut(s)	392, 569, 646, 724, 777, 799
SfcI	CTRYAG	1 cut(s)	847
SinI	GGWCC	1 cut(s)	648
Sse9I	AATT	3 cut(s)	485, 732, 859
SseBI	AGGCCT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	729, 864
SstI	GAGCTC	1 cut(s)	445
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	220, 804
TaaI	ACNGT	4 cut(s)	331, 339, 571, 701
TaiI	ACGT	3 cut(s)	556, 713, 826
TaqI	TCGA	2 cut(s)	319, 439
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	3 cut(s)	485, 732, 859
TfiI	GAWTC	4 cut(s)	403, 499, 725, 773
Tru1I	TTAA	2 cut(s)	471, 908
Tru9I	TTAA	2 cut(s)	471, 908
TscAI	CASTG	3 cut(s)	344, 370, 706
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	3 cut(s)	599, 602, 849
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	182, 297, 909
TspRI	CASTG	3 cut(s)	344, 370, 706
Tth111I	GACNNNGTC	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	648
XbaI	TCTAGA	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	729, 864
ZraI	GACGTC	1 cut(s)	824
Zsp2I	ATGCAT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.