Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016064

Physical Location & Seq

Genomic Coordinates Reverse (-)

5454580 .. 5456100

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGAGTGGAAGGAACGATGGAGTATATATCAGACCTTTTAAAGAAGAGGAAGAGGAAGAAGAAGAAGCAAATGCAAACAGTAGCTCTCCGTGTTGCTCGTATCGACTGCGAAGGCTGTGAACGTAAGATCAAACATGTCCTCTCCGGTGTCAAAGGGGTGAAGTCAGTGGACGTGGACGTAAAGCTGCAGAAGGTAACGGTAACGGGATATATAGACCCAAAGAAGGTTTTGGAGGCTGCCAAGTCAACGAAGAAGAAAGTGGAGTTATGGCCGTACGTTCCTTACACAATGGTGGCGAATCCGTACATATCTCAGGCGTATGACAAGAAGGCACCACCAAACATGGTTCGGAAAGTCCCCGACACGGCCTCTGTCAACGAGACCACCGTCGATGACTCTTACACTATTATGTTTAGCGACGAGAACCCTAATTCTTGCGCTATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

150

Amino Acids

16.9

Weight (kDa)

9.48

Isoelectric Point (pI)

16.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	30 - 86	1.6e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08570
fragaria_vesca	FvH4_5g38120
malus_domestica	MD08G1176900.v1.1
prunus_persica	Prupe.1G511200_v2.0.a1
pyrus_communis	pycom08g15170 pycom15g32530
rosa_chinensis	RchiOBHm_Chr7g0240091
rosa_laevigata	RLG00000000707
rosa_multiflora	Rmu_sc0005008.1_g000037
rosa_roxburghii	Rroxscaffold_3G00220450
rosa_rugosa	Rorug07G0333000
rosa_samantha	Rh7AG486400 Rh7BG459400 Rh7CG503500
rosa_wichuraiana	Rw7G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	272
AfaI	GTAC	2 cut(s)	278, 308
AfiI	CCNNNNNNNGG	2 cut(s)	226, 367
AflIII	ACRYGT	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	86, 187
AluI	AGCT	2 cut(s)	86, 187
Alw26I	GTCTC	1 cut(s)	377
AoxI	GGCC	2 cut(s)	272, 369
ApeKI	GCWGC	2 cut(s)	187, 239
AspLEI	GCGC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	174, 226
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	259, 384
BcoDI	GTCTC	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	188, 240
BlsI	GCNGC	2 cut(s)	189, 241
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	336
BoxI	GACNNNNGTC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 367
BseLI	CCNNNNNNNGG	2 cut(s)	226, 367
BseMII	CTCAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	174, 226
BshFI	GGCC	2 cut(s)	274, 371
BshNI	GGYRCC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	147
BsiWI	CGTACG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	226, 367
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	274, 371
Bso31I	GGTCTC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	274, 371
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	377
BssMI	GATC	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	82, 202, 391
Bst6I	CTCTTC	2 cut(s)	41, 47
BstDEI	CTNAG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	140
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	174, 226
BsuRI	GGCC	2 cut(s)	274, 371
BtrI	CACGTC	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	277, 307
CviAII	CATG	3 cut(s)	137, 346, 448
CviJI	RGCY	6 cut(s)	86, 117, 187, 239, 274, 371
CviKI_1	RGCY	6 cut(s)	86, 117, 187, 239, 274, 371
CviQI	GTAC	2 cut(s)	277, 307
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DraI	TTTAAA	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	41, 47
EarI	CTCTTC	2 cut(s)	41, 47
Eco31I	GGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	140, 349, 451
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	3 cut(s)	136, 345, 447
Fnu4HI	GCNGC	2 cut(s)	188, 240
Fsp4HI	GCNGC	2 cut(s)	188, 240
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	2 cut(s)	188, 240
HaeIII	GGCC	2 cut(s)	274, 371
HapII	CCGG	1 cut(s)	147
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	140, 349, 451
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HincII	GTYRAC	2 cut(s)	249, 379
HindII	GTYRAC	2 cut(s)	249, 379
HinfI	GANTC	2 cut(s)	301, 398
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	5 cut(s)	122, 172, 178, 249, 379
Hpy188I	TCNGA	2 cut(s)	34, 354
Hpy8I	GTNNAC	5 cut(s)	122, 172, 178, 249, 379
Hpy99I	CGWCG	2 cut(s)	395, 425
HpyAV	CCTTC	5 cut(s)	5, 107, 187, 220, 325
HpyCH4III	ACNGT	3 cut(s)	82, 202, 391
HpyCH4IV	ACGT	4 cut(s)	124, 174, 180, 279
HpyCH4V	TGCA	2 cut(s)	76, 190
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	4 cut(s)	124, 174, 180, 279
Hsp92II	CATG	3 cut(s)	140, 349, 451
HspAI	GCGC	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	2 cut(s)	160, 302
Lsp1109I	GCAGC	2 cut(s)	174, 226
MaeII	ACGT	4 cut(s)	124, 174, 180, 279
MaeIII	GTNAC	2 cut(s)	196, 202
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	7 cut(s)	58, 64, 70, 73, 76, 265, 268
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	42, 48, 152, 229, 382
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	293, 410
MspI	CCGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	3 cut(s)	140, 349, 451
NlaIV	GGNNCC	1 cut(s)	336
NspI	RCATGY	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	293
PciI	ACATGT	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	301
Pfl23II	CGTACG	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	189, 241
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PscI	ACATGT	1 cut(s)	136
PshAI	GACNNNNGTC	1 cut(s)	389
PspLI	CGTACG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	278, 308
RsaNI	GTAC	2 cut(s)	277, 307
RseI	CAYNNNNRTG	2 cut(s)	293, 410
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	188, 240
Sau3AI	GATC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	392
SetI	ASST	9 cut(s)	39, 88, 127, 177, 183, 189, 198, 231, 282
SfcI	CTRYAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	293, 410
Sse9I	AATT	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	82, 202, 391
TaiI	ACGT	4 cut(s)	127, 177, 183, 282
TaqI	TCGA	2 cut(s)	105, 393
TasI	AATT	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	2 cut(s)	187, 239
TspGWI	ACGGA	2 cut(s)	80, 294
TspRI	CASTG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.