Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016064

Physical Location & Seq

Genomic Coordinates Reverse (-)

28172941 .. 28174152

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGAGTTCAAGGAACCTTGGAGTACTTGTCAGACCTGCTAAACAGTGTCAAAAGCAAGAAGAAGAAGAAGCAAATACAGACCGTAGCCGTAAAGATTAGGATGGACTGCGATGGTTGTGGTCGCAAGGTGAAGAAGGTCCTCTCCGGTGTAAAAGGGGCTAAATCTGTGGATATCGACTTGAAGCAGCAGAAGGCAACGGTGACTGGTTACGTCGACGCAAAGAAAGTGTTGAAGGCAGCTCAATCGACCAAGAAGAAGTGCGAGCTGTGGCCTTATGTTCCATTCACTCTGGTGGCTCATCCTTATGTTGCCGGAGCCTACGACAAGAAAGCACCTCCAAATATGGTTAGGAGCCTCCCGAGCACGGCCACTATCACCGAGAGTGCTGTGGATGACCACTATACTCAAATGTTCAGTGAGGACAACCCAAATGCCTGCTCTGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

151

Amino Acids

16.43

Weight (kDa)

9.52

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	32 - 86	2.3e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08570
fragaria_vesca	FvH4_5g38120
malus_domestica	MD08G1176900.v1.1
prunus_persica	Prupe.1G511200_v2.0.a1
pyrus_communis	pycom08g15170 pycom15g32530
rosa_chinensis	RchiOBHm_Chr7g0240091
rosa_laevigata	RLG00000000707
rosa_multiflora	Rmu_sc0005008.1_g000037
rosa_roxburghii	Rroxscaffold_3G00220450
rosa_rugosa	Rorug07G0333000
rosa_samantha	Rh7AG486400 Rh7BG459400 Rh7CG503500
rosa_wichuraiana	Rw7G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	369
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	11, 184, 235
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	242, 268
AluI	AGCT	2 cut(s)	242, 268
Alw21I	GWGCWC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	272, 369
ApeKI	GCWGC	2 cut(s)	187, 239
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	142, 214, 370
AvaI	CYCGRG	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	199, 251
BccI	CCATC	2 cut(s)	97, 107
BceAI	ACGGC	2 cut(s)	74, 384
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	2 cut(s)	188, 240
BlsI	GCNGC	2 cut(s)	189, 241
BmcAI	AGTACT	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	16, 319, 356
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	108, 301, 400
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	199, 251
BshFI	GGCC	2 cut(s)	274, 371
BsiHKAI	GWGCWC	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	147, 315
BslI	CCNNNNNNNGG	1 cut(s)	367
BsnI	GGCC	2 cut(s)	274, 371
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	274, 371
BspLI	GGNNCC	3 cut(s)	16, 319, 356
BspMI	ACCTGC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	47, 85, 202
BstC8I	GCNNGC	2 cut(s)	266, 439
BstF5I	GGATG	3 cut(s)	108, 301, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	199, 251
BsuRI	GGCC	2 cut(s)	274, 371
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	108, 301, 400
BtsIMutI	CAGTG	2 cut(s)	52, 424
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	266, 439
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	9 cut(s)	89, 161, 242, 268, 274, 299, 320, 357, 371
CviKI_1	RGCY	9 cut(s)	89, 161, 242, 268, 274, 299, 320, 357, 371
CviQI	GTAC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	451
FaiI	YATR	5 cut(s)	279, 309, 347, 405, 449
FatI	CATG	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	188, 240
FokI	GGATG	3 cut(s)	115, 288, 407
Fsp4HI	GCNGC	2 cut(s)	188, 240
GluI	GCNGC	2 cut(s)	188, 240
HaeIII	GGCC	2 cut(s)	274, 371
HapII	CCGG	2 cut(s)	147, 315
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	147, 315
HphI	GGTGA	3 cut(s)	142, 214, 370
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	218, 221
HpyAV	CCTTC	3 cut(s)	130, 187, 229
HpyCH4III	ACNGT	3 cut(s)	47, 85, 202
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	451
LmnI	GCTCC	2 cut(s)	317, 354
LpnPI	CCDG	5 cut(s)	50, 160, 192, 278, 328
Lsp1109I	GCAGC	2 cut(s)	199, 251
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	202, 209
MboII	GAAGA	5 cut(s)	73, 76, 79, 145, 268
MhlI	GDGCHC	1 cut(s)	368
MnlI	CCTC	4 cut(s)	152, 348, 368, 415
MslI	CAYNNNNRTG	2 cut(s)	293, 306
MspI	CCGG	2 cut(s)	147, 315
MwoI	GCNNNNNNNGC	1 cut(s)	363
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	3 cut(s)	16, 319, 356
NmuCI	GTSAC	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	189, 241
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	16, 319, 356
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	293, 306
SalI	GTCGAC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	188, 240
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	8 cut(s)	20, 39, 132, 141, 216, 244, 270, 340
SgrDI	CGTCGACG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	2 cut(s)	293, 306
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	47, 85, 202
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	177, 216, 248
TatI	WGTACW	1 cut(s)	24
TscAI	CASTG	2 cut(s)	52, 424
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	187, 239
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	2 cut(s)	52, 424
VpaK11BI	GGWCC	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.