Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016064

Physical Location & Seq

Genomic Coordinates Forward (+)

2695942 .. 2697274

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGAATTCAAGGCACCTTGGAGTACTTGTCAGATCTACTAAGCAGTGCCAAAACCAAGAAGAAGAAGAAGCAAACACAGACCGTAGCCGTGAAAATTAGGATGGACTGCGAGGGTTGTGCTCGCAAGGTGAAGAAGGTCCTCTCCGGTGTAAAAGGGGCTAAATCTGTGGATATCGACTTGAAGCAGCAGAAAGCAACGGTGACTGGTTACGTCGATGCAAAGAAAGTGTTGAAGGCAGCTCAGTCGACCAAGAAGAAGTGCGAGCTGTGGCCTTATGTGCCATACACTCTGGTGGCTCATCCTTATGTTGCCGGAGCCTACGACAAGAAGGCACCTCCAAATATGGTTAGGAGCCTCCCAAGCACTGCCACTATCACTGAGAGTGCTATGGATGACCACTACACTCAAATGTTTAGTGAGGAGAACCCAAATGCTTGCTCTGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

150

Amino Acids

16.48

Weight (kDa)

9.5

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	32 - 86	1.8e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08570
fragaria_vesca	FvH4_5g38120
malus_domestica	MD08G1176900.v1.1
prunus_persica	Prupe.1G511200_v2.0.a1
pyrus_communis	pycom08g15170 pycom15g32530
rosa_chinensis	RchiOBHm_Chr7g0240091
rosa_laevigata	RLG00000000707
rosa_multiflora	Rmu_sc0005008.1_g000037
rosa_roxburghii	Rroxscaffold_3G00220450
rosa_rugosa	Rorug07G0333000
rosa_samantha	Rh7AG486400 Rh7BG459400 Rh7CG503500
rosa_wichuraiana	Rw7G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	14, 334
AccI	GTMKAC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	11, 184, 235
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	242, 268
AluI	AGCT	2 cut(s)	242, 268
Alw21I	GWGCWC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	187, 239
ApoI	RAATTY	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	142, 214
AvaII	GGWCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	14, 334
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	199, 251
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 228, 262
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	2 cut(s)	188, 240
BlsI	GCNGC	2 cut(s)	189, 241
BmcAI	AGTACT	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	4 cut(s)	16, 319, 336, 356
BmsI	GCATC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	108, 301, 400
BseMII	CTCAG	2 cut(s)	257, 372
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	199, 251
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	2 cut(s)	14, 334
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	147, 315
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	256, 373
BspLI	GGNNCC	4 cut(s)	16, 319, 336, 356
BspT107I	GGYRCC	2 cut(s)	14, 334
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	85, 202
BstC8I	GCNNGC	3 cut(s)	124, 266, 439
BstDEI	CTNAG	3 cut(s)	41, 243, 381
BstF5I	GGATG	3 cut(s)	108, 301, 400
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 363
BstV1I	GCAGC	2 cut(s)	199, 251
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	108, 301, 400
BtsI	GCAGTG	2 cut(s)	52, 366
BtsIMutI	CAGTG	3 cut(s)	52, 366, 378
Cac8I	GCNNGC	3 cut(s)	124, 266, 439
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	8 cut(s)	89, 161, 242, 268, 274, 299, 320, 357
CviKI_1	RGCY	8 cut(s)	89, 161, 242, 268, 274, 299, 320, 357
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	41, 243, 381
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	5 cut(s)	279, 286, 309, 347, 392
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	2 cut(s)	188, 240
FokI	GGATG	3 cut(s)	115, 288, 407
Fsp4HI	GCNGC	2 cut(s)	188, 240
GluI	GCNGC	2 cut(s)	188, 240
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	2 cut(s)	147, 315
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HpaII	CCGG	2 cut(s)	147, 315
HphI	GGTGA	2 cut(s)	142, 214
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	130, 229, 325
HpyCH4III	ACNGT	2 cut(s)	85, 202
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 363
HpyF3I	CTNAG	3 cut(s)	41, 243, 381
HpySE526I	ACGT	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	317, 354
LpnPI	CCDG	4 cut(s)	160, 192, 278, 328
Lsp1109I	GCAGC	2 cut(s)	199, 251
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	202, 209
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	73, 76, 79, 145, 268
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	6, 96
MnlI	CCTC	5 cut(s)	106, 152, 348, 368, 415
MslI	CAYNNNNRTG	3 cut(s)	293, 306, 410
MspI	CCGG	2 cut(s)	147, 315
MwoI	GCNNNNNNNGC	2 cut(s)	280, 363
NdeII	GATC	1 cut(s)	34
NlaIV	GGNNCC	4 cut(s)	16, 319, 336, 356
NmuCI	GTSAC	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	189, 241
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
PspN4I	GGNNCC	4 cut(s)	16, 319, 336, 356
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	3 cut(s)	293, 306, 410
SalI	GTCGAC	1 cut(s)	247
SatI	GCNGC	2 cut(s)	188, 240
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	20, 132, 141, 216, 244, 270, 340
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	3 cut(s)	293, 306, 410
Sse9I	AATT	2 cut(s)	6, 96
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	85, 202
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	177, 216, 248
TasI	AATT	2 cut(s)	6, 96
TatI	WGTACW	1 cut(s)	24
TscAI	CASTG	3 cut(s)	52, 373, 385
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	187, 239
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	3 cut(s)	52, 373, 385
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	6
XmiI	GTMKAC	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.