AT4G10790

UAS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012942
Physical Location & Seq
Reverse (-)
6640546 .. 6643149
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10790.1

Sequence Viewer

Length: 1443 bp
ATGGTTGATACTGTTGACAAATTAGGTTACTTCCAAGCGATTACAGGTCTCGAAGATGCTGATTTGTGTACTGAGATCCTTCAAGCTCATGGTTGGGACCTAGAACTAGCAATCTCTTCATTCACATCTTCTGATCAAGACGCTTCGTCTTCCGCCGTCGATGGTGGTGGTAACAATCGCGATCACGATCACAATAACGCCACCGTGACTCCTGATTATCCACCTCGCGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAGGAGGAAATCGAGGTCCAGGAGTTGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTTCTGGTAGCTTAGGGTTAGTTTCTGGAGCGATCGGGTTAGGTATTTGGGCCGCTGGTGGTGTTTTATCGTATTCTCTTGGTATGTTAGGGTTTAGATCAGGGAGAGGTGGTGGTTCGGAATCGGCTCGGCTTGTTTCGGTTTCTTCTGCTGTTGGTGAAGCGATGGAGTTTGTTGCTTTGTTTGATAGAGATTATGGGAGTAATAATGCTTTTAAGATTGATTTTGTTGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGTTCGTTTAAGCTCTTGTTTGTTTACTTGCATTCTCCGGATCATCCTGATACACCTGTGTTTTGTGGTGGAACGCTTTGTAATGAAGCCGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGATCTAGTGAAGGGTTTAAGATGAGTAATAGCTTGAAGGCATCGAGGTTCCCGTTTTGCGCTGTGGTTATGCCTGCTGCTAACCAGAGAATTGCTCTTCTTCAGCAGGTCGAGGGACCAAAATCTCCGGAAGAGATGCTTGCCATACTCCAGAGAATTGTAGAAGATAGCTCACCTACTTTGGTAACTGCTAGGGTTGAGGCGGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAAGATGCTGCTTACCGTGCTGCTCTTGAAGCCGATCAAGCAAGGGAGCAACAGAGACAGGAGGAGAAAGAGCGTTTAGAGAGAGAAGCTGCTGAGGCAGAGAGGAAACTCAAAGAAGAAGAAGAGGCTCGGGAGAGAGCAGCGCGTGAAGCTGAAGAGAGACAAGCTGCTAGAGTGCGAATGAGACAAGAGAAAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAAGTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAGATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCTTAGATACAGAAGAGTACAGCTTAATCACAAACTTCCCAAGGACAGTGTATGGGAGAGACAAAGAGTCAATGTCACTGAAAGACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX

Protein Analysis

480

Amino Acids

52.8

Weight (kDa)

4.85

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 7 - 45 5e-11 UBA-like domain
UBA_8 PF22566 7 - 43 1.4e-06 UBA-like domain
FAF1 PF21021 167 - 244 5.1e-09 Fas-associated factor 1
UBX PF00789 399 - 478 3.2e-24 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10790
fragaria_vesca FvH4_5g11270
malus_domestica MD06G1114700.v1.1 MD14G1136100.v1.1
prunus_persica Prupe.5G127400_v2.0.a1
pyrus_communis pycom06g10750 pycom14g10960 pycom14g10970
rosa_chinensis RchiOBHm_Chr7g0186581
rosa_laevigata RLG00000004830
rosa_multiflora Rmu_sc0007722.1_g000020
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065700 Rh7BG081600 Rh7CG082100 Rh7DG083100
rosa_wichuraiana Rw7G006910 Rw7G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 829, 1391
AccII CGCG 3 cut(s) 180, 228, 1117
AccIII TCCGGA 2 cut(s) 631, 859
AciI CCGC 4 cut(s) 153, 228, 381, 935
AclWI GGATC 4 cut(s) 70, 239, 642, 1270
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 3 cut(s) 566, 818, 1146
AfaI GTAC 2 cut(s) 70, 1331
AfiI CCNNNNNNNGG 2 cut(s) 227, 1196
AgsI TTSAA 3 cut(s) 83, 769, 1001
AhdI GACNNNNNGTC 2 cut(s) 145, 1378
AjnI CCWGG 1 cut(s) 286
Alw26I GTCTC 6 cut(s) 53, 1021, 1126, 1150, 1365, 1427
AlwI GGATC 4 cut(s) 70, 239, 642, 1270
Ama87I CYCGRG 1 cut(s) 1101
Aor13HI TCCGGA 2 cut(s) 631, 859
AoxI GGCC 2 cut(s) 378, 1198
ApeKI GCWGC 6 cut(s) 809, 980, 992, 1061, 1112, 1139
ApoI RAATTY 1 cut(s) 706
AspLEI GCGC 3 cut(s) 580, 794, 1117
AspS9I GGNCC 5 cut(s) 97, 284, 378, 848, 1199
AsuHPI GGTGA 2 cut(s) 497, 897
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 3 cut(s) 97, 284, 848
AxyI CCTNAGG 1 cut(s) 1413
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BbsI GAAGAC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 6 cut(s) 796, 967, 979, 1048, 1124, 1126
BccI CCATC 3 cut(s) 155, 260, 487
BceAI ACGGC 2 cut(s) 140, 668
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 6 cut(s) 53, 1021, 1126, 1150, 1365, 1427
BfaI CTAG 6 cut(s) 101, 107, 591, 738, 924, 1143
BfuAI ACCTGC 2 cut(s) 829, 1391
BisI GCNGC 7 cut(s) 381, 810, 981, 993, 1062, 1113, 1140
BlsI GCNGC 7 cut(s) 382, 811, 982, 994, 1063, 1114, 1141
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 3 cut(s) 97, 284, 848
BmeRI GACNNNNNGTC 2 cut(s) 145, 1378
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 5 cut(s) 97, 284, 378, 848, 1199
BmiI GGNNCC 4 cut(s) 98, 782, 849, 1229
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 6 cut(s) 46, 565, 782, 858, 967, 1417
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 811, 843
BpmI CTGGAG 2 cut(s) 375, 866
Bpu10I CCTNAGC 2 cut(s) 340, 1065
BsaAI YACGTR 1 cut(s) 1297
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 1352
BsaWI WCCGGW 2 cut(s) 631, 859
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 424, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 1196
Bse21I CCTNAGG 1 cut(s) 1413
Bse8I GATNNNNATC 1 cut(s) 186
BseAI TCCGGA 2 cut(s) 631, 859
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 1352
BseGI GGATG 4 cut(s) 580, 637, 1260, 1408
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 227, 1196
BseMII CTCAG 5 cut(s) 63, 953, 1056, 1182, 1427
BseRI GAGGAG 2 cut(s) 285, 1049
BseXI GCAGC 6 cut(s) 796, 967, 979, 1048, 1124, 1126
Bsh1236I CGCG 3 cut(s) 180, 228, 1117
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 2 cut(s) 380, 1200
BsiEI CGRYCG 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 2 cut(s) 632, 860
BslFI GGGAC 2 cut(s) 110, 861
BslI CCNNNNNNNGG 2 cut(s) 227, 1196
BsmAI GTCTC 6 cut(s) 53, 1021, 1126, 1150, 1365, 1427
BsmFI GGGAC 2 cut(s) 110, 861
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 2 cut(s) 380, 1200
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 1101
Bsp13I TCCGGA 2 cut(s) 631, 859
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 4 cut(s) 153, 228, 381, 935
BspANI GGCC 2 cut(s) 380, 1200
BspCNI CTCAG 5 cut(s) 64, 954, 1057, 1183, 1426
BspEI TCCGGA 2 cut(s) 631, 859
BspFNI CGCG 3 cut(s) 180, 228, 1117
BspLI GGNNCC 4 cut(s) 98, 782, 849, 1229
BspMI ACCTGC 2 cut(s) 829, 1391
BspPI GGATC 4 cut(s) 70, 239, 642, 1270
BspQI GCTCTTC 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 1352
BssT1I CCWWGG 1 cut(s) 1352
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 13, 205, 989, 1360
Bst6I CTCTTC 7 cut(s) 121, 834, 858, 1089, 1122, 1320, 1430
BstBAI YACGTR 1 cut(s) 1297
BstC8I GCNNGC 2 cut(s) 807, 873
BstDEI CTNAG 7 cut(s) 72, 340, 962, 1065, 1191, 1315, 1413
BstENI CCTNNNNNAGG 1 cut(s) 1194
BstF5I GGATG 4 cut(s) 580, 637, 1260, 1408
BstFNI CGCG 3 cut(s) 180, 228, 1117
BstHHI GCGC 3 cut(s) 580, 794, 1117
BstMAI GTCTC 6 cut(s) 53, 1021, 1126, 1150, 1365, 1427
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 7 cut(s) 256, 689, 989, 1001, 1010, 1067, 1121
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 3 cut(s) 180, 228, 1117
BstV1I GCAGC 6 cut(s) 796, 967, 979, 1048, 1124, 1126
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 75, 1275
BstYI RGATCY 2 cut(s) 75, 1275
Bsu36I CCTNAGG 1 cut(s) 1413
BsuRI GGCC 2 cut(s) 380, 1200
BtgZI GCGATG 1 cut(s) 506
BtsCI GGATG 4 cut(s) 580, 637, 1260, 1408
BtsIMutI CAGTG 2 cut(s) 1365, 1388
BtuMI TCGCGA 1 cut(s) 180
BveI ACCTGC 2 cut(s) 829, 1391
Cac8I GCNNGC 2 cut(s) 807, 873
CfoI GCGC 3 cut(s) 580, 794, 1117
Cfr13I GGNCC 5 cut(s) 97, 284, 378, 848, 1199
CseI GACGC 3 cut(s) 149, 947, 1406
Csp6I GTAC 2 cut(s) 69, 1330
CviAII CATG 1 cut(s) 89
CviQI GTAC 2 cut(s) 69, 1330
DdeI CTNAG 7 cut(s) 72, 340, 962, 1065, 1191, 1315, 1413
DriI GACNNNNNGTC 2 cut(s) 145, 1378
Eam1104I CTCTTC 7 cut(s) 121, 834, 858, 1089, 1122, 1320, 1430
Eam1105I GACNNNNNGTC 2 cut(s) 145, 1378
EarI CTCTTC 7 cut(s) 121, 834, 858, 1089, 1122, 1320, 1430
EciI GGCGGA 2 cut(s) 142, 950
Eco130I CCWWGG 1 cut(s) 1352
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 3 cut(s) 97, 284, 848
Eco57I CTGAAG 3 cut(s) 566, 818, 1146
Eco81I CCTNAGG 1 cut(s) 1413
Eco88I CYCGRG 1 cut(s) 1101
EcoNI CCTNNNNNAGG 1 cut(s) 1194
EcoO109I RGGNCCY 2 cut(s) 97, 1199
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 1352
ErhI CCWWGG 1 cut(s) 1352
FaeI CATG 1 cut(s) 92
FaiI YATR 9 cut(s) 90, 257, 413, 525, 572, 803, 878, 1290, 1365
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 2 cut(s) 110, 861
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 7 cut(s) 381, 810, 981, 993, 1062, 1113, 1140
FokI GGATG 4 cut(s) 587, 624, 1267, 1395
Fsp4HI GCNGC 7 cut(s) 381, 810, 981, 993, 1062, 1113, 1140
FspBI CTAG 6 cut(s) 101, 107, 591, 738, 924, 1143
GlaI GCGC 3 cut(s) 579, 793, 1116
GluI GCNGC 7 cut(s) 381, 810, 981, 993, 1062, 1113, 1140
GsuI CTGGAG 2 cut(s) 375, 866
HaeIII GGCC 2 cut(s) 380, 1200
HapII CCGG 2 cut(s) 632, 860
HgaI GACGC 3 cut(s) 149, 947, 1406
HhaI GCGC 3 cut(s) 580, 794, 1117
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 3 cut(s) 578, 792, 1115
HinP1I GCGC 3 cut(s) 578, 792, 1115
HincII GTYRAC 2 cut(s) 16, 238
HindII GTYRAC 2 cut(s) 16, 238
HinfI GANTC 5 cut(s) 208, 449, 1301, 1311, 1379
HpaII CCGG 2 cut(s) 632, 860
HphI GGTGA 2 cut(s) 497, 897
Hpy166II GTNNAC 4 cut(s) 16, 69, 238, 619
Hpy188I TCNGA 3 cut(s) 133, 448, 963
Hpy8I GTNNAC 4 cut(s) 16, 69, 238, 619
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 89, 557, 737, 763
HpyCH4III ACNGT 4 cut(s) 13, 205, 989, 1360
HpyCH4IV ACGT 1 cut(s) 1296
HpyCH4V TGCA 2 cut(s) 625, 1408
HpyF10VI GCNNNNNNNGC 7 cut(s) 256, 689, 989, 1001, 1010, 1067, 1121
HpyF3I CTNAG 7 cut(s) 72, 340, 962, 1065, 1191, 1315, 1413
HpySE526I ACGT 1 cut(s) 1296
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 3 cut(s) 578, 792, 1115
Kpn2I TCCGGA 2 cut(s) 631, 859
Ksp22I TGATCA 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 356, 1018
Lsp1109I GCAGC 6 cut(s) 796, 967, 979, 1048, 1124, 1126
LweI GCATC 6 cut(s) 46, 565, 782, 858, 967, 1417
MaeI CTAG 6 cut(s) 101, 107, 591, 738, 924, 1143
MaeII ACGT 1 cut(s) 1296
MaeIII GTNAC 6 cut(s) 26, 170, 205, 916, 1207, 1386
MflI RGATCY 2 cut(s) 75, 1275
MluCI AATT 4 cut(s) 20, 706, 822, 888
MlyI GAGTC 3 cut(s) 202, 1305, 1388
MroI TCCGGA 2 cut(s) 631, 859
MseI TTAA 6 cut(s) 543, 603, 699, 750, 1260, 1337
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 2 cut(s) 632, 860
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 3 cut(s) 180, 228, 1117
MwoI GCNNNNNNNGC 7 cut(s) 256, 689, 989, 1001, 1010, 1067, 1121
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 4 cut(s) 98, 782, 849, 1229
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 205, 1386
NruI TCGCGA 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 834
PcsI WCGNNNNNNNCGW 1 cut(s) 782
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 449, 1301
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 7 cut(s) 382, 811, 982, 994, 1063, 1114, 1141
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 3 cut(s) 202, 1305, 1387
PpsI GAGTC 3 cut(s) 202, 1305, 1387
Ppu21I YACGTR 1 cut(s) 1297
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 4 cut(s) 98, 782, 849, 1229
PspPI GGNCC 5 cut(s) 97, 284, 378, 848, 1199
PspPPI RGGWCCY 1 cut(s) 97
PsuI RGATCY 2 cut(s) 75, 1275
PvuI CGATCG 1 cut(s) 363
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 2 cut(s) 70, 1331
RsaNI GTAC 2 cut(s) 69, 1330
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 6 cut(s) 543, 603, 699, 750, 1260, 1337
SatI GCNGC 7 cut(s) 381, 810, 981, 993, 1062, 1113, 1140
Sau96I GGNCC 5 cut(s) 97, 284, 378, 848, 1199
SchI GAGTC 3 cut(s) 202, 1305, 1388
ScrFI CCNGG 1 cut(s) 288
SfaNI GCATC 6 cut(s) 46, 565, 782, 858, 967, 1417
SinI GGWCC 3 cut(s) 97, 284, 848
Sse9I AATT 4 cut(s) 20, 706, 822, 888
SsiI CCGC 4 cut(s) 153, 228, 381, 935
SspMI CTAG 6 cut(s) 101, 107, 591, 738, 924, 1143
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 1352
TaaI ACNGT 4 cut(s) 13, 205, 989, 1360
TaiI ACGT 1 cut(s) 1299
TaqI TCGA 8 cut(s) 51, 159, 280, 323, 733, 776, 843, 1431
TasI AATT 4 cut(s) 20, 706, 822, 888
TatI WGTACW 2 cut(s) 68, 1329
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 2 cut(s) 449, 1301
Tru1I TTAA 6 cut(s) 543, 603, 699, 750, 1260, 1337
Tru9I TTAA 6 cut(s) 543, 603, 699, 750, 1260, 1337
TscAI CASTG 2 cut(s) 1365, 1395
TseFI GTSAC 2 cut(s) 205, 1386
TseI GCWGC 6 cut(s) 809, 980, 992, 1061, 1112, 1139
Tsp45I GTSAC 2 cut(s) 205, 1386
TspDTI ATGAA 3 cut(s) 108, 693, 1417
TspRI CASTG 2 cut(s) 1365, 1395
VpaK11BI GGWCC 3 cut(s) 97, 284, 848
XagI CCTNNNNNAGG 1 cut(s) 1194
XapI RAATTY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XspI CTAG 6 cut(s) 101, 107, 591, 738, 924, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.