pycom14g10970

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012942
Physical Location & Seq
Forward (+)
13772340 .. 13772882
543 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10970.1

Sequence Viewer

Length: 294 bp
ATGCGGCAGGAGAAAGCCTTGTCACTTGGTGCCGAACCTGAAAAAGGACCTGATGTTACACAGGTTGTGGTTCGGTTCCCAACTGGACAACGCAAGGAAAGGAGATTCCACAGCACTGCATTAATCCAAAGTGTCCATGATTTTGTCGATTCTTTGGGTTGTGTTGATGCCGAGAGCTACAGTTTGGTGTCAAACTTCCCTCGAGTTGTATATGGACCAGAGAAGTTGTCTTTATCCTTGAAAGAAGCAGGATTGCATCCACAGGCCAGCCTTTTTCTGGAGCTGAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX

Protein Analysis

98

Amino Acids

10.74

Weight (kDa)

6.27

Isoelectric Point (pI)

22.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBX PF00789 15 - 94 1.5e-20 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10790
fragaria_vesca FvH4_5g11270
malus_domestica MD06G1114700.v1.1 MD14G1136100.v1.1
prunus_persica Prupe.5G127400_v2.0.a1
pyrus_communis pycom06g10750 pycom14g10960 pycom14g10970
rosa_chinensis RchiOBHm_Chr7g0186581
rosa_laevigata RLG00000004830
rosa_multiflora Rmu_sc0007722.1_g000020
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065700 Rh7BG081600 Rh7CG082100 Rh7DG083100
rosa_wichuraiana Rw7G006910 Rw7G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 286
AdeI CACNNNGTG 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 44, 277
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 2 cut(s) 177, 283
AluI AGCT 2 cut(s) 177, 283
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 286
AseI ATTAAT 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 47, 215
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 2 cut(s) 47, 215
BanI GGYRCC 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 47, 215
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 47, 215
BmiI GGNNCC 2 cut(s) 31, 77
BmsI GCATC 2 cut(s) 157, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 277
Bse1I ACTGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 44, 277
BseNI ACTGG 1 cut(s) 88
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 44, 277
BsnI GGCC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 201
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 266
BspLI GGNNCC 2 cut(s) 31, 77
BspT107I GGYRCC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 47, 215
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 17, 177, 266, 270, 283
CviKI_1 RGCY 5 cut(s) 17, 177, 266, 270, 283
DraIII CACNNNGTG 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 47, 215
Eco88I CYCGRG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 286
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 138, 211, 213
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 266
Hin1II CATG 1 cut(s) 140
HinfI GANTC 2 cut(s) 105, 149
Hpy188III TCNNGA 2 cut(s) 278, 291
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 119, 256
Hsp92II CATG 1 cut(s) 140
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 9 cut(s) 47, 51, 63, 69, 231, 234, 248, 263, 280
LweI GCATC 2 cut(s) 157, 265
MaeIII GTNAC 2 cut(s) 21, 55
MluCI AATT 1 cut(s) 286
MnlI CCTC 1 cut(s) 210
MseI TTAA 1 cut(s) 122
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 31, 77
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 201
PfeI GAWTC 2 cut(s) 105, 149
PkrI GCNGC 1 cut(s) 6
PpuMI RGGWCCY 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 31, 77
PspPI GGNCC 2 cut(s) 47, 215
PspPPI RGGWCCY 1 cut(s) 47
PspXI VCTCGAGB 1 cut(s) 201
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 5
Sau96I GGNCC 2 cut(s) 47, 215
SetI ASST 5 cut(s) 40, 52, 66, 179, 285
SfaNI GCATC 2 cut(s) 157, 265
SfcI CTRYAG 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 2 cut(s) 47, 215
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 4
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 147, 202
TasI AATT 1 cut(s) 286
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 105, 149
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 21
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 47, 215
VspI ATTAAT 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.