Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003344

Physical Location & Seq

Genomic Coordinates Forward (+)

8341244 .. 8343262

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTTTCAGAAGTAGAAATGGCTCGAGACGTGGCTATATGTGCCAAACACTTGAATGGCCAATCGCCGCACCAACCGATTCTATGCAGACTACTCCAAGATCTAATACACGAGAAAGCGTGCAGGGAACACGGATTCTATCTCGGCATCACCGCTCTAAAAAGCATCGGTAACAACAAGAACAACAACATCGACAACGAAAACAATCATCAAGCAAAAATCCTCACATTCCCGGTGTCCTTCACATGCCGCACATTCTTGCCTGCAAGAGGAGATATCTTGCAAGGGACTGTAAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTCAGATACGCATACCTCTCACTCTTGAAAATGCCACATTATCATTATGTCCACTCACCATTGTCGGAGGACGAGAAACCGCATTTTCAGAAAGACGACCTCTCAAAGATTGCTGTTGGAGTTGTTGTGCGGTTTCAGGTGTTGGCTGTGCGGTTTAAAGAGAGACCACACAAGAGAAGAAACGACTATTATGTTCTTGCAACTTTGGAAGGCAATGGTTCATTTGGTCCCATCTCTCTTACAGGGTCAGATGAGCCATACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

200

Amino Acids

22.75

Weight (kDa)

9.16

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520
fragaria_vesca	FvH4_4g02580 FvH4_4g02580
malus_domestica	MD13G1206600.v1.1 MD16G1207800.v1.1
prunus_persica	Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1
pyrus_communis	pycom13g17900 pycom16g17520
rosa_chinensis	RchiOBHm_Chr4g0390281
rosa_laevigata	RLG00000009928
rosa_multiflora	Rmu_sc0004432.1_g000010 Rmu_sc0014620.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336400
rosa_rugosa	Rorug03G0329000
rosa_samantha	Rh4AG031400 Rh4BG025400 Rh4CG034600 Rh4DG026600
rosa_wichuraiana	Rw4G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	155
AciI	CCGC	6 cut(s)	68, 153, 250, 416, 466, 487
AcoI	YGGCCR	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	55, 364
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	21, 493
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	332, 563
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	142, 384
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	332, 563
BalI	TGGCCA	1 cut(s)	60
BauI	CACGAG	1 cut(s)	110
BccI	CCATC	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	21, 493
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	2 cut(s)	68, 250
BlsI	GCNGC	2 cut(s)	69, 251
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	332, 563
BmeT110I	CYCGRG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	332, 563
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	156, 174
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	301, 549
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	21, 493
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	2 cut(s)	301, 549
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	6 cut(s)	68, 153, 250, 416, 466, 487
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	556
BssMI	GATC	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	121, 264
BstDEI	CTNAG	1 cut(s)	338
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	21, 493
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	249, 601
BstSCI	CCNGG	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	121, 264
Cfr13I	GGNCC	2 cut(s)	332, 563
CviAII	CATG	2 cut(s)	246, 598
CviJI	RGCY	6 cut(s)	23, 35, 60, 317, 482, 592
CviKI_1	RGCY	6 cut(s)	23, 35, 60, 317, 482, 592
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraI	TTTAAA	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	332, 563
Eco88I	CYCGRG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	249, 601
FaiI	YATR	9 cut(s)	38, 40, 85, 247, 349, 384, 528, 595, 599
FaqI	GGGAC	2 cut(s)	301, 549
FatI	CATG	2 cut(s)	245, 597
Fnu4HI	GCNGC	2 cut(s)	68, 250
Fsp4HI	GCNGC	2 cut(s)	68, 250
GluI	GCNGC	2 cut(s)	68, 250
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	2 cut(s)	249, 601
HinfI	GANTC	2 cut(s)	79, 135
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	142, 384
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	5 cut(s)	10, 341, 403, 426, 586
Hpy188III	TCNNGA	3 cut(s)	26, 330, 361
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	250, 539
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	87, 123, 266, 283, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	249, 601
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	109, 246, 276, 310, 315, 458, 564
LweI	GCATC	2 cut(s)	156, 174
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	525
MflI	RGATCY	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	381, 433
MnlI	CCTC	5 cut(s)	233, 263, 362, 397, 446
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	249, 601
NlaIV	GGNNCC	1 cut(s)	565
NmeAIII	GCCGAG	1 cut(s)	123
NspI	RCATGY	2 cut(s)	249, 601
PaeR7I	CTCGAG	1 cut(s)	24
PciI	ACATGT	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	79, 135
PkrI	GCNGC	2 cut(s)	69, 251
PscI	ACATGT	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	332, 563
PsuI	RGATCY	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	68, 250
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	332, 563
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	6 cut(s)	33, 319, 329, 354, 438, 477
SfaNI	GCATC	2 cut(s)	156, 174
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	332, 563
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SsiI	CCGC	6 cut(s)	68, 153, 250, 416, 466, 487
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	25, 192
TauI	GCSGC	2 cut(s)	70, 252
TfiI	GAWTC	2 cut(s)	79, 135
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	2 cut(s)	147, 327
VpaK11BI	GGWCC	2 cut(s)	332, 563
XagI	CCTNNNNNAGG	1 cut(s)	267
XceI	RCATGY	2 cut(s)	249, 601
XhoI	CTCGAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.