Rorug03G0329000

DNA-directed RNA polymerase V subunit 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000823
Physical Location & Seq
Reverse (-)
37992999 .. 37998606
5608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0329000.1

Sequence Viewer

Length: 858 bp
ATGACAATGACTCCAAACCTTGTATCTCTCACCCGTACATCCCCATTCTTAAATCCTTTTGTTGGAGGATGTTGTTCCCGTAAACCCATTTTGCATTCTACTACGATTGCAGCAAATCGAATTCAGACCCGTTCTCACTCGTATGCTCTGAATTCCTATAATGGAATAGGAGGATTCCGGCAACTGCGTTTTAGTCCGAAGGCGGTTTCCGATGATGGGTCCAACGGAAGTGATGGTAATTCTGGTGGCGGAAACAATCATGGCAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGAAGGTGGTGGCAAAGGTGATGATAGTAATTGGTCTTTCCTCTCATGGTATTTGGATCTTCTTGCAAAGTATCCTGTGTCGATAAAAGCTCTGACATCTGCATTTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACGTGAAAAGAACATTCTTATTTACCTTGCTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTCACGCTGCCTGGAGCATCAGGTGCATTCATGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTACATTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCTTCCCAAATTGTACCCAAGCTACAACAGGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTACCACAGCAATTGCAGGTTCTTACTGCTAATGTTATTGCTTTGGTATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGGTTCTTCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHS2_Rpb7-N

Protein Analysis

285

Amino Acids

31.04

Weight (kDa)

9.36

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 216 - 275 1.4e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AciI CCGC 2 cut(s) 203, 249
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 2 cut(s) 120, 151
AfaI GTAC 3 cut(s) 37, 675, 762
AfiI CCNNNNNNNGG 2 cut(s) 62, 216
AgsI TTSAA 1 cut(s) 851
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 4 cut(s) 383, 430, 682, 833
AluI AGCT 4 cut(s) 383, 430, 682, 833
AlwI GGATC 1 cut(s) 357
ApeKI GCWGC 3 cut(s) 110, 514, 553
ApoI RAATTY 2 cut(s) 120, 151
Asp700I GAANNNNTTC 1 cut(s) 661
AspS9I GGNCC 2 cut(s) 219, 506
AsuHPI GGTGA 3 cut(s) 22, 305, 323
AvaII GGWCC 2 cut(s) 219, 506
BbsI GAAGAC 1 cut(s) 664
BbvI GCAGC 3 cut(s) 122, 501, 540
BccI CCATC 2 cut(s) 209, 227
BciT130I CCWGG 1 cut(s) 558
BciVI GTATCC 2 cut(s) 375, 723
BclI TGATCA 2 cut(s) 439, 592
BfuAI ACCTGC 1 cut(s) 766
BfuI GTATCC 2 cut(s) 375, 723
BisI GCNGC 3 cut(s) 111, 515, 554
BlsI GCNGC 3 cut(s) 112, 516, 555
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 219, 506
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 219, 506
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 664
BpmI CTGGAG 2 cut(s) 579, 671
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 216
Bse1I ACTGG 2 cut(s) 549, 654
BseBI CCWGG 1 cut(s) 558
BseGI GGATG 2 cut(s) 38, 74
BseLI CCNNNNNNNGG 2 cut(s) 62, 216
BseNI ACTGG 2 cut(s) 549, 654
BseXI GCAGC 3 cut(s) 122, 501, 540
BseYI CCCAGC 1 cut(s) 487
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 62, 216
BsmI GAATGC 2 cut(s) 94, 572
Bsp143I GATC 3 cut(s) 349, 439, 592
BspACI CCGC 2 cut(s) 203, 249
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 1 cut(s) 357
BsrI ACTGG 2 cut(s) 549, 654
BssMI GATC 3 cut(s) 349, 439, 592
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 726
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 428, 711
BstDEI CTNAG 1 cut(s) 536
BstF5I GGATG 2 cut(s) 38, 74
BstKTI GATC 3 cut(s) 352, 442, 595
BstMBI GATC 3 cut(s) 349, 439, 592
BstMWI GCNNNNNNNGC 2 cut(s) 569, 710
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstV1I GCAGC 3 cut(s) 122, 501, 540
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 2 cut(s) 375, 723
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 38, 74
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 2 cut(s) 428, 711
CciI TCATGA 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 219, 506
CseI GACGC 1 cut(s) 520
Csp6I GTAC 3 cut(s) 36, 674, 761
CspCI CAANNNNNGTGG 4 cut(s) 674, 709, 753, 788
CviAII CATG 4 cut(s) 260, 339, 450, 577
CviJI RGCY 5 cut(s) 383, 430, 582, 682, 833
CviKI_1 RGCY 5 cut(s) 383, 430, 582, 682, 833
CviQI GTAC 3 cut(s) 36, 674, 761
DdeI CTNAG 1 cut(s) 536
DpnI GATC 3 cut(s) 351, 441, 594
DpnII GATC 3 cut(s) 349, 439, 592
DraI TTTAAA 1 cut(s) 829
EciI GGCGGA 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 219, 506
EcoRI GAATTC 2 cut(s) 120, 151
EcoRII CCWGG 1 cut(s) 556
FaeI CATG 4 cut(s) 263, 342, 453, 580
FaiI YATR 7 cut(s) 144, 159, 261, 340, 451, 578, 808
FalI AAGNNNNNCTT 1 cut(s) 831
FatI CATG 4 cut(s) 259, 338, 449, 576
FbaI TGATCA 2 cut(s) 439, 592
Fnu4HI GCNGC 3 cut(s) 111, 515, 554
FokI GGATG 2 cut(s) 25, 81
Fsp4HI GCNGC 3 cut(s) 111, 515, 554
GluI GCNGC 3 cut(s) 111, 515, 554
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 2 cut(s) 579, 671
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 520
Hin1II CATG 4 cut(s) 263, 342, 453, 580
HinfI GANTC 2 cut(s) 10, 174
HpaII CCGG 1 cut(s) 178
HphI GGTGA 3 cut(s) 22, 305, 323
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 6 cut(s) 126, 150, 198, 211, 387, 510
Hpy188III TCNNGA 2 cut(s) 455, 577
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 4 cut(s) 193, 290, 593, 672
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 7 cut(s) 94, 110, 359, 395, 517, 572, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 710
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 4 cut(s) 263, 342, 453, 580
Ksp22I TGATCA 2 cut(s) 439, 592
Kzo9I GATC 3 cut(s) 349, 439, 592
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 3 cut(s) 122, 501, 540
LweI GCATC 1 cut(s) 572
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 547
MalI GATC 3 cut(s) 351, 441, 594
MboI GATC 3 cut(s) 349, 439, 592
MboII GAAGA 3 cut(s) 344, 669, 839
MfeI CAATTG 1 cut(s) 770
MflI RGATCY 1 cut(s) 349
MluCI AATT 8 cut(s) 120, 151, 238, 322, 669, 715, 740, 770
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 3 cut(s) 43, 246, 533
MroXI GAANNNNTTC 1 cut(s) 661
MseI TTAA 4 cut(s) 50, 401, 747, 828
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 770
Mva1269I GAATGC 2 cut(s) 94, 572
MvaI CCWGG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 569, 710
NdeII GATC 3 cut(s) 349, 439, 592
NlaIII CATG 4 cut(s) 263, 342, 453, 580
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 547
PagI TCATGA 1 cut(s) 576
PctI GAATGC 2 cut(s) 94, 572
PdmI GAANNNNTTC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 3 cut(s) 112, 516, 555
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 219, 506
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 3 cut(s) 37, 675, 762
RsaNI GTAC 3 cut(s) 36, 674, 761
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 4 cut(s) 50, 401, 747, 828
SatI GCNGC 3 cut(s) 111, 515, 554
Sau3AI GATC 3 cut(s) 349, 439, 592
Sau96I GGNCC 2 cut(s) 219, 506
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 558
SfaNI GCATC 1 cut(s) 572
SinI GGWCC 2 cut(s) 219, 506
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 8 cut(s) 120, 151, 238, 322, 669, 715, 740, 770
SsiI CCGC 2 cut(s) 203, 249
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 726
TaiI ACGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 118, 374
TasI AATT 8 cut(s) 120, 151, 238, 322, 669, 715, 740, 770
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 4 cut(s) 50, 401, 747, 828
Tru9I TTAA 4 cut(s) 50, 401, 747, 828
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 3 cut(s) 110, 514, 553
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 1 cut(s) 565
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 219, 506
XapI RAATTY 2 cut(s) 120, 151
XmnI GAANNNNTTC 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.