Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

28401105 .. 28402685

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1184700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTATGCAGCGATGAAACCAACGAAGCCGGGACTGGAGGAGTCTCAGGAGCAGATCCACAAGATCAGGATCACTCTTTCCTCCAAGAACGTCAAGAATCTCGAGAAAGTTTGCACTGATCTGGTTCGTGGTGCCAAGGACAAGCGCCTGAGGGTGAAGGGACCCGTGAGGATGCCTACCAAGGTTCTGAACATTACCACCAGGAAGTCTCCTTGTGGTGAAGGTACCAACACATGGGATAGATTTGAGTTGCGTGTCCACAAGAGGGTTATCGACCTGTTCAGCTCACCTGATGTTGTCAAGCAAATTACTTCCATCACAATTGAACCTGGTGTCGAGGTGGAGGTTACAATCGCCGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

9.65

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 118	9e-29	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	134, 227
AccB7I	CCANNNNNTGG	1 cut(s)	237
AclWI	GGATC	2 cut(s)	52, 80
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	237, 268
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	203, 331
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	51, 216
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	169, 233, 282
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	152
BanI	GGYRCC	2 cut(s)	134, 227
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	205, 333
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	51, 216
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	33, 205, 333
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	4 cut(s)	136, 165, 166, 229
BmrFI	CCNGG	3 cut(s)	33, 205, 333
BmsI	GCATC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	138, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 268
Bse1I	ACTGG	1 cut(s)	42
Bse21I	CCTNAGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	205, 333
BseDI	CCNNGG	2 cut(s)	138, 183
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	237, 268
BseMII	CTCAG	2 cut(s)	62, 143
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	23
BshNI	GGYRCC	2 cut(s)	134, 227
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	48, 177
BslI	CCNNNNNNNGG	2 cut(s)	237, 268
BsmAI	GTCTC	2 cut(s)	51, 216
BsmFI	GGGAC	2 cut(s)	48, 177
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	57, 66, 72, 121
BspCNI	CTCAG	2 cut(s)	61, 144
BspLI	GGNNCC	4 cut(s)	136, 165, 166, 229
BspPI	GGATC	2 cut(s)	52, 80
BspT107I	GGYRCC	2 cut(s)	134, 227
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	138, 183
BssMI	GATC	4 cut(s)	57, 66, 72, 121
BssT1I	CCWWGG	2 cut(s)	138, 183
Bst2UI	CCWGG	2 cut(s)	205, 333
BstDEI	CTNAG	2 cut(s)	48, 152
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	4 cut(s)	60, 69, 75, 124
BstMAI	GTCTC	2 cut(s)	51, 216
BstMBI	GATC	4 cut(s)	57, 66, 72, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	205, 333
BstSCI	CCNGG	3 cut(s)	31, 203, 331
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	2 cut(s)	31, 288
CviKI_1	RGCY	2 cut(s)	31, 288
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	48, 152
DpnI	GATC	4 cut(s)	59, 68, 74, 123
DpnII	GATC	4 cut(s)	57, 66, 72, 121
Eco130I	CCWWGG	2 cut(s)	138, 183
Eco47I	GGWCC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	203, 331
EcoT14I	CCWWGG	2 cut(s)	138, 183
ErhI	CCWWGG	2 cut(s)	138, 183
FaeI	CATG	1 cut(s)	240
FaiI	YATR	2 cut(s)	9, 238
FaqI	GGGAC	2 cut(s)	48, 177
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	12
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	151
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	44, 100, 362
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	3 cut(s)	169, 233, 282
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	5 cut(s)	50, 70, 97, 104, 106
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	11, 117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	48, 152
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	148
KflI	GGGWCCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	57, 66, 72, 121
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	4 cut(s)	59, 68, 74, 123
MboI	GATC	4 cut(s)	57, 66, 72, 121
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	2 cut(s)	309, 324
MlyI	GAGTC	2 cut(s)	53, 356
MnlI	CCTC	7 cut(s)	34, 94, 147, 165, 261, 334, 340
MseI	TTAA	1 cut(s)	367
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	33, 205, 333
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	205, 333
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	57, 66, 72, 121
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	4 cut(s)	136, 165, 166, 229
PaeR7I	CTCGAG	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	52, 356
PpsI	GAGTC	2 cut(s)	52, 356
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	203, 331
PspGI	CCWGG	2 cut(s)	203, 331
PspN4I	GGNNCC	4 cut(s)	136, 165, 166, 229
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	57, 66, 72, 121
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	53, 356
ScrFI	CCNGG	3 cut(s)	33, 205, 333
SetI	ASST	9 cut(s)	96, 189, 229, 282, 290, 295, 334, 345, 351
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	309, 324
StyD4I	CCNGG	3 cut(s)	31, 203, 331
StyI	CCWWGG	2 cut(s)	138, 183
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	105, 276, 339
TasI	AATT	2 cut(s)	309, 324
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.