Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

65722208 .. 65726268

Gene Structure 4061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG471800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACAGGAGCAGATCCACAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGGACAAGAGGCTCAGGGTGAAGGGACCAGTGGGGATGCCTACGAAGGTTCTGCACATTACCACCAGGAAGTCTCCCTGTGGAGAAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

67

Amino Acids

7.58

Weight (kDa)

6.83

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	52, 80
AfaI	GTAC	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	31, 174
Alw26I	GTCTC	3 cut(s)	38, 41, 187
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	2 cut(s)	38, 104
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	38, 104
AvaII	GGWCC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	33, 176
BcoDI	GTCTC	3 cut(s)	38, 41, 187
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	33, 176
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	2 cut(s)	38, 104
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	33, 176
BmsI	GCATC	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	33, 176
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	147
BsiHKCI	CYCGRG	2 cut(s)	38, 104
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	38, 41, 187
BsmFI	GGGAC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 104
Bsp143I	GATC	3 cut(s)	57, 66, 72
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	52, 80
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	57, 66, 72
Bst2UI	CCWGG	2 cut(s)	33, 176
Bst6I	CTCTTC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	60, 69, 75
BstMAI	GTCTC	3 cut(s)	38, 41, 187
BstMBI	GATC	3 cut(s)	57, 66, 72
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	33, 176
BstSCI	CCNGG	2 cut(s)	31, 174
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	3 cut(s)	5, 31, 122
CviKI_1	RGCY	3 cut(s)	5, 31, 122
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	59, 68, 74
DpnII	GATC	3 cut(s)	57, 66, 72
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	135
Eco88I	CYCGRG	2 cut(s)	38, 104
EcoRII	CCWGG	2 cut(s)	31, 174
FaqI	GGGAC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HphI	GGTGA	1 cut(s)	140
Hpy188III	TCNNGA	4 cut(s)	38, 70, 97, 106
HpyAV	CCTTC	3 cut(s)	125, 149, 189
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	57, 66, 72
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	18, 35, 45, 55, 110, 151, 161, 188, 200
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	93
MalI	GATC	3 cut(s)	59, 68, 74
MboI	GATC	3 cut(s)	57, 66, 72
MboII	GAAGA	1 cut(s)	75
MflI	RGATCY	1 cut(s)	57
MnlI	CCTC	3 cut(s)	34, 112, 113
MspR9I	CCNGG	2 cut(s)	33, 176
MvaI	CCWGG	2 cut(s)	33, 176
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	57, 66, 72
NlaIV	GGNNCC	1 cut(s)	136
PaeR7I	CTCGAG	2 cut(s)	38, 104
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	31, 174
PspGI	CCWGG	2 cut(s)	31, 174
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	57, 66, 72
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	33, 176
SetI	ASST	4 cut(s)	96, 105, 160, 200
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	2 cut(s)	38, 104
SinI	GGWCC	1 cut(s)	135
SlaI	CTCGAG	2 cut(s)	38, 104
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
StyD4I	CCNGG	2 cut(s)	31, 174
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	39, 105
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	135
XhoI	CTCGAG	2 cut(s)	38, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.