Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

17453423 .. 17454730

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTATGAACCGATGAAGCCCACGAAAGCTGGTTTGGAGGCTCCTCTGGAGCAGATTCATAAGATCAGGATCACTCTCTCTTCAAAAAATGTGAAGAACTTGGAAAAAGTGTGCACTGATTTGGTCCGTGGAGCTAAGGATAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCACTAAGGTTCTTAAGATCACTACCAGAAAGGCACCTTGTGGTGAAGGTACCAATACTTGGGACAGGTTTGAGCTCAGGGTTCACAAGCGTGTCATCGATCTCTTCAGCTCCCCTGACGTTGTTAAGCAAATCACGTCTATCACCATTGAGCCCGGTGTTGAGGTCGAGGTCACTATTGCTGACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

122

Amino Acids

13.69

Weight (kDa)

9.73

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 118	1.5e-28	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	211, 227
AccB7I	CCANNNNNTGG	1 cut(s)	237
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	315
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	4 cut(s)	32, 137, 253, 288
AluI	AGCT	4 cut(s)	32, 137, 253, 288
Alw21I	GWGCWC	2 cut(s)	119, 255
Alw26I	GTCTC	1 cut(s)	142
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	80
ApaLI	GTGCAC	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	127, 164
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	233, 313
AvaII	GGWCC	2 cut(s)	127, 164
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	2 cut(s)	211, 227
BanII	GRGCYC	2 cut(s)	255, 333
Bbv12I	GWGCWC	2 cut(s)	119, 255
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	2 cut(s)	127, 164
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	127, 164
BmiI	GGNNCC	4 cut(s)	45, 165, 213, 229
BmrFI	CCNGG	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	138, 254
BpuMI	CCSGG	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	211, 227
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	119, 255
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	177, 254
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	177, 254
BsmI	GAATGC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	119, 255, 333
Bsp143I	GATC	4 cut(s)	66, 72, 195, 277
BspCNI	CTCAG	1 cut(s)	267
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	4 cut(s)	45, 165, 213, 229
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	2 cut(s)	211, 227
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	4 cut(s)	66, 72, 195, 277
Bst6I	CTCTTC	2 cut(s)	88, 287
BstAFI	CTTAAG	1 cut(s)	191
BstDEI	CTNAG	5 cut(s)	138, 152, 183, 254, 366
BstDSI	CCRYGG	1 cut(s)	130
BstKTI	GATC	4 cut(s)	69, 75, 198, 280
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	66, 72, 195, 277
BstSCI	CCNGG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	117, 174
Cfr13I	GGNCC	2 cut(s)	127, 164
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	228
CviJI	RGCY	7 cut(s)	22, 32, 44, 137, 253, 288, 331
CviKI_1	RGCY	7 cut(s)	22, 32, 44, 137, 253, 288, 331
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	5 cut(s)	138, 152, 183, 254, 366
DpnI	GATC	4 cut(s)	68, 74, 197, 279
DpnII	GATC	4 cut(s)	66, 72, 195, 277
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	88, 287
EarI	CTCTTC	2 cut(s)	88, 287
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	2 cut(s)	255, 333
Eco47I	GGWCC	2 cut(s)	127, 164
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	255, 333
FaiI	YATR	2 cut(s)	9, 63
FaqI	GGGAC	2 cut(s)	177, 254
FriOI	GRGCYC	2 cut(s)	255, 333
GsuI	CTGGAG	1 cut(s)	71
HapII	CCGG	1 cut(s)	333
HinfI	GANTC	2 cut(s)	58, 362
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	233, 313
Hpy166II	GTNNAC	2 cut(s)	117, 262
Hpy188III	TCNNGA	2 cut(s)	50, 70
Hpy8I	GTNNAC	2 cut(s)	117, 262
HpyAV	CCTTC	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	297, 314
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	5 cut(s)	138, 152, 183, 254, 366
HpySE526I	ACGT	2 cut(s)	297, 314
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	66, 72, 195, 277
LmnI	GCTCC	4 cut(s)	49, 52, 134, 293
LpnPI	CCDG	9 cut(s)	18, 35, 55, 180, 217, 229, 241, 306, 346
MaeII	ACGT	2 cut(s)	297, 314
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	4 cut(s)	68, 74, 197, 279
MboI	GATC	4 cut(s)	66, 72, 195, 277
MboII	GAAGA	3 cut(s)	75, 109, 274
MhlI	GDGCHC	3 cut(s)	119, 255, 333
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	34, 57, 334, 340
MseI	TTAA	3 cut(s)	159, 192, 303
MslI	CAYNNNNRTG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	66, 72, 195, 277
NlaIV	GGNNCC	4 cut(s)	45, 165, 213, 229
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	267
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	4 cut(s)	45, 165, 213, 229
PspPI	GGNCC	2 cut(s)	127, 164
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	159, 192, 303
Sau3AI	GATC	4 cut(s)	66, 72, 195, 277
Sau96I	GGNCC	2 cut(s)	127, 164
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	3 cut(s)	119, 255, 333
SinI	GGWCC	2 cut(s)	127, 164
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	331
TaiI	ACGT	2 cut(s)	300, 317
TaqI	TCGA	2 cut(s)	276, 345
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	159, 192, 303
Tru9I	TTAA	3 cut(s)	159, 192, 303
TscAI	CASTG	2 cut(s)	124, 174
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	24, 32, 50
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	124, 174
Van91I	CCANNNNNTGG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	127, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.