Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

3848268 .. 3849381

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACCGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACCTTGAGAAAGGACAAGAGGCTCAGGGTGAAGGACTGAAAGGACCAATGGGGATGCCTACGAAGGTTCTGCACATTACCACCAGGAAGTCTCCCTGTGGAGAAGGTACTAATACATGGGACAGATTTGAGTTGCGTGTGCACAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACAATTGAACCTGATGGAGGTCACAATTGCCGAAAGTTGAAGACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

9.51

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	31 - 101	1.1e-15	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	52, 80
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	308, 340
AjnI	CCWGG	2 cut(s)	31, 182
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	3 cut(s)	38, 41, 195
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	140, 283
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	2 cut(s)	33, 184
BcoDI	GTCTC	3 cut(s)	38, 41, 195
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	33, 184
Bme18I	GGWCC	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	33, 184
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	33, 184
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	3 cut(s)	38, 41, 195
BsmFI	GGGAC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	57, 66, 72, 256, 288
BspCNI	CTCAG	1 cut(s)	136
BspPI	GGATC	2 cut(s)	52, 80
BspTNI	GGTCTC	1 cut(s)	41
BssMI	GATC	5 cut(s)	57, 66, 72, 256, 288
Bst2UI	CCWGG	2 cut(s)	33, 184
Bst6I	CTCTTC	2 cut(s)	88, 266
BstDEI	CTNAG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	5 cut(s)	60, 69, 75, 259, 291
BstMAI	GTCTC	3 cut(s)	38, 41, 195
BstMBI	GATC	5 cut(s)	57, 66, 72, 256, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	33, 184
BstSCI	CCNGG	2 cut(s)	31, 182
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	4 cut(s)	5, 31, 122, 267
CviKI_1	RGCY	4 cut(s)	5, 31, 122, 267
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	5 cut(s)	59, 68, 74, 258, 290
DpnII	GATC	5 cut(s)	57, 66, 72, 256, 288
Eam1104I	CTCTTC	2 cut(s)	88, 266
EarI	CTCTTC	2 cut(s)	88, 266
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	31, 182
FaeI	CATG	1 cut(s)	219
FaiI	YATR	1 cut(s)	217
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	219
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	140, 283
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	5 cut(s)	38, 61, 70, 97, 272
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	125, 157, 197
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	172, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	57, 66, 72, 256, 288
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	5 cut(s)	59, 68, 74, 258, 290
MboI	GATC	5 cut(s)	57, 66, 72, 256, 288
MboII	GAAGA	3 cut(s)	75, 76, 253
MfeI	CAATTG	2 cut(s)	303, 325
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	303, 325
MnlI	CCTC	4 cut(s)	34, 112, 304, 311
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	33, 184
MunI	CAATTG	2 cut(s)	303, 325
MvaI	CCWGG	2 cut(s)	33, 184
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	57, 66, 72, 256, 288
NlaIII	CATG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	31, 182
PspGI	CCWGG	2 cut(s)	31, 182
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	57, 66, 72, 256, 288
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	33, 184
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	96, 105, 168, 208, 269, 296, 313, 322
SfaNI	GCATC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
Sse9I	AATT	2 cut(s)	303, 325
StyD4I	CCNGG	2 cut(s)	31, 182
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	303, 325
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	315
XhoI	CTCGAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.