Prupe.1G120500_v2.0.a1

40S ribosomal protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
9468904 .. 9469393
490 bp
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UTR
Exon/CDS
Intron
Prupe.1G120500.1

Sequence Viewer

Length: 288 bp
ATGGTTCATGGTGCAAAAGACAAGAGGCTCCGGGTTAAGGGACCCGTGAGAATGCTAACCAAGATTCTGCACATTACCACCAAGAAGTCCACTTGTGGTGAAGGTATGTTTCAATTTATTGAAGTACAGTTTCTTTGTTTTTGCATTTTAAAGGGTTATGACAGATTTGAGTTGCGTGTCCACAAGAGGGTGATTGACCTCTTCAGCTCTCCTGATGTCATCAAGCAAATTACTTCCGTTACAATTGAGCCTAGTGTGGAAGTGGAGGTTACAATCGCAGACTCTTAA

Protein Analysis

96

Amino Acids

10.85

Weight (kDa)

9.15

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 37, 187
AgsI TTSAA 2 cut(s) 113, 122
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 110, 202
AvaII GGWCC 1 cut(s) 41
BcnI CCSGG 1 cut(s) 32
BfaI CTAG 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 29, 42, 43
BmrFI CCNGG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 187
BseLI CCNNNNNNNGG 2 cut(s) 37, 187
BsgI GTGCAG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 37, 187
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 29, 42, 43
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 125
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 28, 207, 250
CviKI_1 RGCY 3 cut(s) 28, 207, 250
CviQI GTAC 1 cut(s) 125
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 41
FaeI CATG 1 cut(s) 11
FaiI YATR 3 cut(s) 9, 107, 159
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 7
FspBI CTAG 1 cut(s) 252
HapII CCGG 1 cut(s) 31
Hin1II CATG 1 cut(s) 11
HinfI GANTC 2 cut(s) 64, 281
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 110, 202
Hpy166II GTNNAC 2 cut(s) 90, 181
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 90, 181
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 14, 70, 144
Hsp92II CATG 1 cut(s) 11
KflI GGGWCCC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 44, 225
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 238, 268
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 1 cut(s) 243
MluCI AATT 3 cut(s) 113, 228, 243
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 4 cut(s) 18, 180, 209, 259
MseI TTAA 3 cut(s) 36, 149, 286
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 57
NciI CCSGG 1 cut(s) 32
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 3 cut(s) 29, 42, 43
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 64
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PpuMI RGGWCCY 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 29, 42, 43
PspPI GGNCC 1 cut(s) 41
PspPPI RGGWCCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 36, 149, 286
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 32
SetI ASST 4 cut(s) 106, 201, 209, 270
SinI GGWCC 1 cut(s) 41
Sse9I AATT 3 cut(s) 113, 228, 243
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 129
TasI AATT 3 cut(s) 113, 228, 243
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 3 cut(s) 36, 149, 286
Tru9I TTAA 3 cut(s) 36, 149, 286
TspGWI ACGGA 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 41
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.